{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,26]],"date-time":"2026-08-26T07:48:19Z","timestamp":1787730499315,"version":"build-2784847793"},"reference-count":107,"publisher":"American Chemical Society (ACS)","issue":"6","license":[{"start":{"date-parts":[[2022,5,2]],"date-time":"2022-05-02T00:00:00Z","timestamp":1651449600000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000092","name":"U.S. National Library of Medicine","doi-asserted-by":"publisher","award":["ZIA LM092404"],"award-info":[{"award-number":["ZIA LM092404"]}],"id":[{"id":"10.13039\/100000092","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Center for Antibiotic Resistance Research, University of Gothenburg"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Am. Soc. Mass Spectrom."],"published-print":{"date-parts":[[2022,6,1]]},"DOI":"10.1021\/jasms.1c00347","type":"journal-article","created":{"date-parts":[[2022,5,2]],"date-time":"2022-05-02T20:01:10Z","timestamp":1651521670000},"page":"917-931","source":"Crossref","is-referenced-by-count":14,"title":["Identification of Antibiotic Resistance Proteins via MiCId\u2019s Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach"],"prefix":"10.1021","volume":"33","author":[{"given":"Gelio","family":"Alves","sequence":"first","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aleksey","family":"Ogurtsov","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roger","family":"Karlsson","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden"},{"name":"Department of Clinical Microbiology, Sahlgrenska University Hospital, 40234 Gothenburg, Sweden"},{"name":"Center for Antibiotic Resistance Research (CARe), University of Gothenburg, 40016 Gothenburg, Sweden"},{"name":"Nanoxis Consulting AB, 40234 Gothenburg, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Ja\u00e9n-Luchoro","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden"},{"name":"Center for Antibiotic Resistance Research (CARe), University of Gothenburg, 40016 Gothenburg, Sweden"},{"name":"Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, 40234 Gothenburg, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beatriz","family":"Pi\u00f1eiro-Iglesias","sequence":"additional","affiliation":[{"name":"Department of Clinical Microbiology, Sahlgrenska University Hospital, 40234 Gothenburg, Sweden"},{"name":"Center for Antibiotic Resistance Research (CARe), University of Gothenburg, 40016 Gothenburg, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Francisco","family":"Salv\u00e0-Serra","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden"},{"name":"Department of Clinical Microbiology, Sahlgrenska University Hospital, 40234 Gothenburg, Sweden"},{"name":"Center for Antibiotic Resistance Research (CARe), University of Gothenburg, 40016 Gothenburg, Sweden"},{"name":"Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, 40234 Gothenburg, Sweden"},{"name":"Microbiology, Department of Biology, University of the Balearic Islands, 07122 Palma de Mallorca, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bj\u00f6rn","family":"Andersson","sequence":"additional","affiliation":[{"name":"Bioinformatics Core Facility at Sahlgrenska Academy, University of Gothenburg, Box 413, 40530 Gothenburg, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edward R. B.","family":"Moore","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden"},{"name":"Department of Clinical Microbiology, Sahlgrenska University Hospital, 40234 Gothenburg, Sweden"},{"name":"Center for Antibiotic Resistance Research (CARe), University of Gothenburg, 40016 Gothenburg, Sweden"},{"name":"Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, 40234 Gothenburg, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6213-7665","authenticated-orcid":true,"given":"Yi-Kuo","family":"Yu","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, United States"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2022,5,2]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"publisher","DOI":"10.1016\/j.addr.2005.04.005"},{"key":"ref2\/cit2","doi-asserted-by":"publisher","DOI":"10.1086\/499406"},{"key":"ref3\/cit3","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2009.02738.x"},{"issue":"3","key":"ref4\/cit4","first-page":"562","volume":"27","author":"Ciorba V.","year":"2015","journal-title":"Ann. Ig"},{"key":"ref5\/cit5","doi-asserted-by":"publisher","DOI":"10.36469\/jheor.2020.12637"},{"key":"ref6\/cit6","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr349"},{"key":"ref7\/cit7","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/cis1006"},{"key":"ref8\/cit8","doi-asserted-by":"publisher","DOI":"10.1021\/pr050294t"},{"key":"ref9\/cit9","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2243"},{"key":"ref10\/cit10","first-page":"149","volume-title":"Advances in Applied Microbiology","volume":"71","author":"Giebel R.","year":"2010"},{"key":"ref11\/cit11","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-92"},{"key":"ref12\/cit12","doi-asserted-by":"publisher","DOI":"10.1186\/gm485"},{"key":"ref13\/cit13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu267"},{"key":"ref14\/cit14","doi-asserted-by":"publisher","DOI":"10.1101\/gr.171934.113"},{"key":"ref15\/cit15","doi-asserted-by":"publisher","DOI":"10.1016\/j.gpb.2015.10.003"},{"key":"ref16\/cit16","doi-asserted-by":"publisher","DOI":"10.1016\/j.syapm.2015.03.006"},{"key":"ref17\/cit17","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0117617"},{"key":"ref18\/cit18","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2015.00791"},{"key":"ref19\/cit19","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2015.02.005"},{"key":"ref20\/cit20","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.201400361"},{"key":"ref21\/cit21","doi-asserted-by":"publisher","DOI":"10.1007\/s13361-015-1271-2"},{"key":"ref22\/cit22","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-016-0176-z"},{"key":"ref23\/cit23","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.ARBA-0011-2017"},{"key":"ref24\/cit24","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.M116.061721"},{"key":"ref25\/cit25","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-85438-5"},{"key":"ref26\/cit26","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.201500074"},{"key":"ref27\/cit27","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkaa345"},{"key":"ref28\/cit28","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bby012"},{"key":"ref29\/cit29","doi-asserted-by":"publisher","DOI":"10.1007\/s13361-018-1986-y"},{"key":"ref30\/cit30","doi-asserted-by":"publisher","DOI":"10.1021\/jasms.9b00035"},{"key":"ref31\/cit31","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.201700003"},{"key":"ref32\/cit32","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.RA118.000739"},{"key":"ref33\/cit33","doi-asserted-by":"publisher","DOI":"10.1002\/prca.201800182"},{"key":"ref34\/cit34","doi-asserted-by":"publisher","DOI":"10.1021\/acsinfecdis.0c00196"},{"key":"ref35\/cit35","doi-asserted-by":"publisher","DOI":"10.1016\/j.csbj.2017.10.001"},{"key":"ref36\/cit36","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbiotec.2017.06.1201"},{"key":"ref37\/cit37","doi-asserted-by":"publisher","DOI":"10.1080\/14789450.2019.1609944"},{"key":"ref38\/cit38","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-016-2855-3"},{"key":"ref39\/cit39","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-017-01544-x"},{"key":"ref40\/cit40","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu717"},{"key":"ref41\/cit41","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-60761-842-3_13"},{"key":"ref42\/cit42","doi-asserted-by":"publisher","DOI":"10.4155\/bio-2019-0032"},{"key":"ref43\/cit43","doi-asserted-by":"publisher","DOI":"10.1097\/QCO.0000000000000447"},{"key":"ref44\/cit44","doi-asserted-by":"publisher","DOI":"10.1016\/j.epidem.2009.09.001"},{"key":"ref45\/cit45","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.01434"},{"key":"ref46\/cit46","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2005.12.006"},{"key":"ref47\/cit47","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1009245"},{"key":"ref48\/cit48","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2021.634215"},{"key":"ref49\/cit49","doi-asserted-by":"publisher","DOI":"10.1186\/1745-6150-2-25"},{"issue":"3","key":"ref50\/cit50","first-page":"183","volume":"78","author":"Ogunseitan O. A.","year":"1995","journal-title":"Sci. Prog."},{"key":"ref51\/cit51","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1234"},{"key":"ref52\/cit52","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz935"},{"key":"ref53\/cit53","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz899"},{"key":"ref54\/cit54","unstructured":"Prokaryotic RefSeq\nGenomes. https:\/\/www.ncbi.nlm.nih.gov\/refseq\/about\/prokaryotes\/."},{"key":"ref55\/cit55","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-010-9717-3"},{"key":"ref56\/cit56","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-577"},{"key":"ref57\/cit57","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01009-09"},{"key":"ref58\/cit58","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbs004"},{"key":"ref59\/cit59","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2839"},{"key":"ref60\/cit60","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.47.9.3034-3035.2003"},{"key":"ref61\/cit61","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01382-16"},{"key":"ref62\/cit62","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000233"},{"key":"ref63\/cit63","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv1189"},{"key":"ref64\/cit64","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.48.6.2043-2048.2004"},{"key":"ref65\/cit65","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01410-08"},{"key":"ref66\/cit66","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000265"},{"key":"ref67\/cit67","unstructured":"National Database\nof Antibiotic Resistant Organisms (NDARO). https:\/\/www.ncbi.nlm.nih.gov\/pathogens\/antimicrobial-resistance\/."},{"key":"ref68\/cit68","doi-asserted-by":"publisher","DOI":"10.1016\/S1286-4579(02)01637-4"},{"key":"ref69\/cit69","unstructured":"WHO publishes\nlist of bacteria for which new antibiotics are urgently needed. https:\/\/www.who.int\/news\/item\/27-02-2017-who-publishes-list-of-bacteria-for-which-new-antibiotics-are-urgently-needed."},{"key":"ref70\/cit70","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.43.4.727"},{"key":"ref71\/cit71","doi-asserted-by":"publisher","DOI":"10.1016\/j.drup.2010.08.003"},{"key":"ref72\/cit72","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0208804"},{"key":"ref73\/cit73","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-anchem-071114-040325"},{"key":"ref74\/cit74","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.M113.032946"},{"key":"ref75\/cit75","doi-asserted-by":"publisher","DOI":"10.1021\/acs.analchem.8b04843"},{"key":"ref76\/cit76","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.RA119.001667"},{"key":"ref77\/cit77","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jproteome.0c00674"},{"key":"ref78\/cit78","doi-asserted-by":"publisher","DOI":"10.1099\/00207713-44-4-846"},{"key":"ref79\/cit79","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2012.02.008"},{"key":"ref80\/cit80","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baaa062"},{"key":"ref81\/cit81","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.02475-19"},{"key":"ref82\/cit82","doi-asserted-by":"publisher","DOI":"10.1016\/j.euprot.2014.04.001"},{"key":"ref83\/cit83","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx669"},{"key":"ref84\/cit84","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-9-505"},{"key":"ref85\/cit85","doi-asserted-by":"publisher","DOI":"10.2307\/2289950"},{"key":"ref86\/cit86","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.200900433"},{"key":"ref87\/cit87","doi-asserted-by":"publisher","DOI":"10.1007\/s13361-011-0139-3"},{"key":"ref88\/cit88","doi-asserted-by":"publisher","DOI":"10.1021\/pr101143m"},{"key":"ref89\/cit89","doi-asserted-by":"publisher","DOI":"10.1021\/pr301139y"},{"key":"ref90\/cit90","first-page":"11","volume":"17","author":"Ghafourian S.","year":"2015","journal-title":"Curr. Issues Mol. Biol."},{"key":"ref91\/cit91","doi-asserted-by":"publisher","DOI":"10.1101\/cshperspect.a025247"},{"key":"ref92\/cit92","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00296-11"},{"key":"ref93\/cit93","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.48.1.1-14.2004"},{"key":"ref94\/cit94","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.18.4.657-686.2005"},{"key":"ref95\/cit95","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2005.05.027"},{"key":"ref96\/cit96","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.41.8.1749"},{"key":"ref97\/cit97","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.41.5.956"},{"key":"ref98\/cit98","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01807-15"},{"key":"ref99\/cit99","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms4010014"},{"key":"ref100\/cit100","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2016.02.008"},{"key":"ref101\/cit101","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgar.2016.08.007"},{"key":"ref102\/cit102","doi-asserted-by":"publisher","DOI":"10.1128\/jb.169.5.1923-1928.1987"},{"key":"ref103\/cit103","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01783-16"},{"key":"ref104\/cit104","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.201200565"},{"key":"ref105\/cit105","doi-asserted-by":"publisher","DOI":"10.2144\/btn-2018-0135"},{"key":"ref106\/cit106","doi-asserted-by":"publisher","DOI":"10.1021\/pr1002438"},{"key":"ref107\/cit107","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.O116.065136"}],"container-title":["Journal of the American Society for Mass Spectrometry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/jasms.1c00347","content-type":"application\/pdf","content-version":"vor","intended-application":"unspecified"},{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/jasms.1c00347","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,27]],"date-time":"2023-04-27T18:36:22Z","timestamp":1682620582000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/jasms.1c00347"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,5,2]]},"references-count":107,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2022,6,1]]}},"alternative-id":["10.1021\/jasms.1c00347"],"URL":"https:\/\/doi.org\/10.1021\/jasms.1c00347","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2021.11.17.468978","asserted-by":"object"}]},"ISSN":["1044-0305","1879-1123"],"issn-type":[{"value":"1044-0305","type":"print"},{"value":"1879-1123","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,5,2]]}}}