{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T08:36:12Z","timestamp":1791275772195,"version":"4.1.0"},"reference-count":69,"publisher":"American Chemical Society (ACS)","issue":"12","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Proteome Res."],"published-print":{"date-parts":[[2013,12,6]]},"DOI":"10.1021\/pr400446z","type":"journal-article","created":{"date-parts":[[2013,9,16]],"date-time":"2013-09-16T09:07:07Z","timestamp":1379322427000},"page":"5410-5421","source":"Crossref","is-referenced-by-count":26,"title":["Improving the Identification Rate of Endogenous Peptides Using Electron Transfer Dissociation and Collision-Induced Dissociation"],"prefix":"10.1021","volume":"12","author":[{"given":"Eisuke","family":"Hayakawa","sequence":"first","affiliation":[{"name":"Research\rGroup of Functional Genomics and Proteomics, KU Leuven, Leuven, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gerben","family":"Menschaert","sequence":"additional","affiliation":[{"name":"Faculty\rof Bioscience Engineering, Laboratory for Bioinformatics and Computational\rGenomics, Ghent University, Ghent, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pieter-Jan","family":"De Bock","sequence":"additional","affiliation":[{"name":"Department\rof Medical Protein Research, VIB, Ghent, Belgium"},{"name":"Department\rof Biochemistry, Ghent University, Ghent, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Walter","family":"Luyten","sequence":"additional","affiliation":[{"name":"Biomedical\rSciences Group, Department of Pharmaceutical and Pharmacological Sciences, KU Leuven, Leuven, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kris","family":"Gevaert","sequence":"additional","affiliation":[{"name":"Department\rof Medical Protein Research, VIB, Ghent, Belgium"},{"name":"Department\rof Biochemistry, Ghent University, Ghent, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Geert","family":"Baggerman","sequence":"additional","affiliation":[{"name":"VITO, Mol, Belgium"},{"name":"CFP\/Ceproma, University Antwerpen, Antwerpen, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Liliane","family":"Schoofs","sequence":"additional","affiliation":[{"name":"Research\rGroup of Functional Genomics and Proteomics, KU Leuven, Leuven, Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"316","published-online":{"date-parts":[[2013,10,3]]},"reference":[{"key":"ref1\/cit1","doi-asserted-by":"crossref","first-page":"976","DOI":"10.1016\/1044-0305(94)80016-2","volume":"5","author":"Eng J. K.","year":"1994","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"ref2\/cit2","doi-asserted-by":"crossref","first-page":"3551","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2","volume":"20","author":"Perkins D. N.","year":"1999","journal-title":"Electrophoresis"},{"key":"ref3\/cit3","doi-asserted-by":"crossref","first-page":"1466","DOI":"10.1093\/bioinformatics\/bth092","volume":"20","author":"Craig R.","year":"2004","journal-title":"Bioinformatics"},{"key":"ref4\/cit4","doi-asserted-by":"crossref","first-page":"958","DOI":"10.1021\/pr0499491","volume":"3","author":"Geer L. Y.","year":"2004","journal-title":"J. Proteome Res."},{"key":"ref5\/cit5","doi-asserted-by":"crossref","first-page":"40368","DOI":"10.1074\/jbc.M206257200","volume":"277","author":"Baggerman G.","year":"2002","journal-title":"J. Biol. Chem."},{"key":"ref6\/cit6","doi-asserted-by":"crossref","first-page":"1638","DOI":"10.1074\/mcp.M900044-MCP200","volume":"8","author":"Sasaki K.","year":"2009","journal-title":"Mol. Cell. Proteomics"},{"key":"ref7\/cit7","doi-asserted-by":"crossref","first-page":"3298","DOI":"10.1039\/c1mb05309d","volume":"7","author":"Munawar A.","year":"2011","journal-title":"Mol. Biosyst."},{"key":"ref8\/cit8","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1002\/psc.851","volume":"13","author":"Li G.-H.","year":"2007","journal-title":"J. Pept. Sci."},{"key":"ref9\/cit9","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1074\/mcp.M700016-MCP200","volume":"6","author":"F\u00e4lth M.","year":"2007","journal-title":"Mol. Cell. Proteomics"},{"key":"ref10\/cit10","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/S1367-5931(98)80033-1","volume":"2","author":"Steiner D. F.","year":"1998","journal-title":"Curr. Opin. Chem. Biol."},{"key":"ref11\/cit11","doi-asserted-by":"crossref","first-page":"E449","DOI":"10.1208\/aapsj070244","volume":"7","author":"Fricker L. D.","year":"2005","journal-title":"AAPS J."},{"key":"ref12\/cit12","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1002\/mas.20079","volume":"25","author":"Fricker L. D.","year":"2006","journal-title":"Mass Spectrom. Rev."},{"key":"ref13\/cit13","doi-asserted-by":"crossref","first-page":"1337","DOI":"10.1016\/S0028-3908(00)00010-1","volume":"39","author":"H\u00f6kfelt T.","year":"2000","journal-title":"Neuropharmacology"},{"key":"ref14\/cit14","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1002\/pro.5560020401","volume":"2","author":"Eipper B. a","year":"1993","journal-title":"Protein Sci."},{"key":"ref15\/cit15","doi-asserted-by":"crossref","first-page":"9528","DOI":"10.1073\/pnas.0402700101","volume":"101","author":"Syka J. E. P.","year":"2004","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"ref16\/cit16","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1016\/S1044-0305(00)00223-3","volume":"12","author":"McLafferty F. W.","year":"2001","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"ref17\/cit17","doi-asserted-by":"crossref","first-page":"9540","DOI":"10.1021\/ac202327r","volume":"83","author":"Li W.","year":"2011","journal-title":"Anal. Chem."},{"key":"ref18\/cit18","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1074\/mcp.T400022-MCP200","volume":"4","author":"Nielsen M. L.","year":"2005","journal-title":"Mol. Cell. Proteomics"},{"key":"ref19\/cit19","doi-asserted-by":"crossref","first-page":"2840","DOI":"10.1074\/mcp.M110.003731","volume":"9","author":"Kim S.","year":"2010","journal-title":"Mol. Cell. Proteomics"},{"key":"ref20\/cit20","doi-asserted-by":"crossref","first-page":"478","DOI":"10.1074\/mcp.O111.014522","volume":"11","author":"Wright J.","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"ref21\/cit21","doi-asserted-by":"crossref","first-page":"4825","DOI":"10.1021\/ac8007785","volume":"80","author":"Molina H.","year":"2008","journal-title":"Anal. Chem."},{"key":"ref22\/cit22","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1074\/mcp.R112.018556","volume":"11","author":"Guthals A.","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"ref23\/cit23","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1038\/nmeth.1260","volume":"5","author":"Swaney D. L.","year":"2008","journal-title":"Nat. Methods"},{"key":"ref24\/cit24","doi-asserted-by":"crossref","first-page":"2377","DOI":"10.1021\/pr1011729","volume":"10","author":"Frese C. K.","year":"2011","journal-title":"J. Proteome Res."},{"key":"ref25\/cit25","doi-asserted-by":"crossref","first-page":"478","DOI":"10.1074\/mcp.O111.014522","volume":"11","author":"Wright J. C.","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"ref26\/cit26","doi-asserted-by":"crossref","first-page":"3929","DOI":"10.1021\/pr200052c","volume":"10","author":"Shen Y.","year":"2011","journal-title":"J. Proteome Res."},{"key":"ref27\/cit27","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1021\/pr200597j","volume":"11","author":"Shen Y.","year":"2012","journal-title":"J. Proteome Res."},{"key":"ref28\/cit28","doi-asserted-by":"crossref","first-page":"700","DOI":"10.1074\/mcp.M112.017400","volume":"12","author":"Sasaki K.","year":"2013","journal-title":"Mol. Cell. Proteomics"},{"key":"ref29\/cit29","doi-asserted-by":"crossref","first-page":"768","DOI":"10.1021\/ac0258709","volume":"75","author":"Feny\u00f6 D.","year":"2003","journal-title":"Anal. Chem."},{"key":"ref30\/cit30","doi-asserted-by":"crossref","first-page":"e15438","DOI":"10.1371\/journal.pone.0015438","volume":"5","author":"Alves G.","year":"2010","journal-title":"PLoS One"},{"key":"ref31\/cit31","doi-asserted-by":"crossref","DOI":"10.7312\/gumb92958","volume-title":"Statistics of Extremes","author":"Gumbel E. J.","year":"1958"},{"key":"ref32\/cit32","doi-asserted-by":"crossref","first-page":"4625","DOI":"10.1073\/pnas.91.11.4625","volume":"91","author":"Waterman M. S.","year":"1994","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"ref33\/cit33","doi-asserted-by":"crossref","first-page":"1507","DOI":"10.1261\/rna.5248604","volume":"10","author":"Rehmsmeier M.","year":"2004","journal-title":"RNA"},{"key":"ref34\/cit34","doi-asserted-by":"crossref","first-page":"D1063","DOI":"10.1093\/nar\/gks1262","volume":"41","author":"Vizca\u00edno J. A.","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"ref35\/cit35","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1074\/mcp.R112.018556","volume":"11","author":"Guthals A.","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"ref36\/cit36","doi-asserted-by":"crossref","first-page":"4381","DOI":"10.1002\/pmic.200900248","volume":"9","author":"Menschaert G.","year":"2009","journal-title":"Proteomics"},{"key":"ref37\/cit37","doi-asserted-by":"crossref","first-page":"1111","DOI":"10.1007\/s13361-011-0139-3","volume":"22","author":"Gupta N.","year":"2011","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"ref38\/cit38","doi-asserted-by":"crossref","first-page":"5144","DOI":"10.1073\/pnas.80.16.5144","volume":"80","author":"Eipper B. a","year":"1983","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"ref39\/cit39","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1002\/pmic.201100327","volume":"12","author":"An Z.","year":"2012","journal-title":"Proteomics"},{"key":"ref40\/cit40","doi-asserted-by":"crossref","first-page":"998","DOI":"10.1074\/mcp.M500401-MCP200","volume":"5","author":"F\u00e4lth M.","year":"2006","journal-title":"Mol. Cell. Proteomics"},{"key":"ref41\/cit41","doi-asserted-by":"crossref","first-page":"W267","DOI":"10.1093\/nar\/gkl161","volume":"34","author":"Southey B. R.","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"ref42\/cit42","doi-asserted-by":"crossref","first-page":"7","DOI":"10.3389\/neuro.11.007.2008","volume":"2","author":"Southey B. R.","year":"2008","journal-title":"Front. Neuroinf."},{"key":"ref43\/cit43","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/j.chroma.2006.01.098","volume":"1120","author":"Zheng X.","year":"2006","journal-title":"J. Chromatogr. A"},{"key":"ref44\/cit44","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1039\/c003317k","volume":"6","author":"Fricker L. D.","year":"2010","journal-title":"Mol. BioSyst."},{"key":"ref45\/cit45","doi-asserted-by":"crossref","first-page":"4992","DOI":"10.1021\/pr800394e","volume":"7","author":"Bora A.","year":"2008","journal-title":"J. Proteome Res."},{"key":"ref46\/cit46","doi-asserted-by":"crossref","first-page":"990","DOI":"10.1021\/pr900885k","volume":"9","author":"Menschaert G.","year":"2010","journal-title":"J. Proteome Res."},{"key":"ref47\/cit47","doi-asserted-by":"crossref","first-page":"M110.002220","DOI":"10.1074\/mcp.M110.002220","volume":"10","author":"Jeong K.","year":"2011","journal-title":"Mol. Cell. Proteomics"},{"key":"ref48\/cit48","doi-asserted-by":"crossref","first-page":"628","DOI":"10.1021\/pr049770q","volume":"4","author":"Hogan J. M.","year":"2005","journal-title":"J. Proteome Res."},{"key":"ref49\/cit49","doi-asserted-by":"crossref","first-page":"753","DOI":"10.1016\/j.jasms.2008.03.007","volume":"19","author":"Zubarev R. A.","year":"2008","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"ref50\/cit50","doi-asserted-by":"crossref","first-page":"2568","DOI":"10.1002\/pmic.201000547","volume":"11","author":"Kim M.-S.","year":"2011","journal-title":"Proteomics"},{"key":"ref51\/cit51","doi-asserted-by":"crossref","first-page":"1929","DOI":"10.1046\/j.1432-1327.2001.02067.x","volume":"268","author":"Clynen E.","year":"2001","journal-title":"Eur. J. Biochem."},{"key":"ref52\/cit52","doi-asserted-by":"crossref","first-page":"4992","DOI":"10.1021\/pr800394e","author":"Bora A.","year":"2008","journal-title":"J. Proteome Res."},{"key":"ref53\/cit53","doi-asserted-by":"crossref","first-page":"4478","DOI":"10.1021\/pr200284e","volume":"10","author":"Dircksen H.","year":"2011","journal-title":"J. Proteome Res."},{"key":"ref54\/cit54","doi-asserted-by":"crossref","first-page":"3965","DOI":"10.1021\/pr201066t","volume":"11","author":"Yin P.","year":"2012","journal-title":"J. Proteome Res."},{"key":"ref55\/cit55","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1126\/science.1124128","volume":"314","author":"Hummon A. B.","year":"2006","journal-title":"Science"},{"key":"ref56\/cit56","doi-asserted-by":"crossref","first-page":"1168","DOI":"10.1111\/j.1471-4159.2009.06530.x","volume":"112","author":"Zhang X.","year":"2010","journal-title":"J. Neurochem."},{"key":"ref57\/cit57","doi-asserted-by":"crossref","first-page":"886","DOI":"10.1021\/pr200709j","volume":"11","author":"Petruzziello F.","year":"2012","journal-title":"J. Proteome Res."},{"key":"ref58\/cit58","doi-asserted-by":"crossref","first-page":"2819","DOI":"10.1021\/pr3001699","volume":"11","author":"Zhang X.","year":"2012","journal-title":"J. Proteome Res."},{"key":"ref59\/cit59","doi-asserted-by":"crossref","first-page":"1870","DOI":"10.1021\/pr101114a","volume":"10","author":"Osaki T.","year":"2011","journal-title":"J. Proteome Res."},{"key":"ref60\/cit60","doi-asserted-by":"crossref","first-page":"5047","DOI":"10.1021\/pr1003455","volume":"9","author":"Sasaki K.","year":"2010","journal-title":"J. Proteome Res."},{"key":"ref61\/cit61","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1038\/45230","volume":"402","author":"Kojima M.","year":"1999","journal-title":"Nature"},{"key":"ref62\/cit62","doi-asserted-by":"crossref","first-page":"34010","DOI":"10.1074\/jbc.M205883200","volume":"277","author":"Fujii R.","year":"2002","journal-title":"J. Biol. Chem."},{"key":"ref63\/cit63","doi-asserted-by":"crossref","first-page":"M111.010199","DOI":"10.1074\/mcp.M111.010199","volume":"11","author":"Na S.","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"ref64\/cit64","doi-asserted-by":"crossref","first-page":"1562","DOI":"10.1038\/nbt1168","volume":"23","author":"Tsur D.","year":"2005","journal-title":"Nat. Biotechnol."},{"key":"ref65\/cit65","doi-asserted-by":"crossref","first-page":"2051","DOI":"10.1021\/pr900929m","volume":"9","author":"Menschaert G.","year":"2010","journal-title":"J. Proteome Res."},{"key":"ref66\/cit66","doi-asserted-by":"crossref","first-page":"768","DOI":"10.1101\/gr.7.8.768","volume":"7","author":"Basrai M. A.","year":"1997","journal-title":"Genome Res."},{"key":"ref67\/cit67","doi-asserted-by":"crossref","first-page":"660","DOI":"10.1038\/ncb1595","volume":"9","author":"Kondo T.","year":"2007","journal-title":"Nat. Cell Biol."},{"key":"ref68\/cit68","doi-asserted-by":"crossref","first-page":"789","DOI":"10.1016\/j.cell.2011.10.002","volume":"147","author":"Ingolia N. T.","year":"2011","journal-title":"Cell"},{"key":"ref69\/cit69","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nchembio.1120","volume":"9","author":"Slavoff S. A.","year":"2013","journal-title":"Nat. Chem. Biol."}],"container-title":["Journal of Proteome Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/pr400446z","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,4,17]],"date-time":"2023-04-17T03:32:08Z","timestamp":1681702328000},"score":1,"resource":{"primary":{"URL":"https:\/\/pubs.acs.org\/doi\/10.1021\/pr400446z"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,10,3]]},"references-count":69,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2013,12,6]]}},"alternative-id":["10.1021\/pr400446z"],"URL":"https:\/\/doi.org\/10.1021\/pr400446z","relation":{},"ISSN":["1535-3893","1535-3907"],"issn-type":[{"value":"1535-3893","type":"print"},{"value":"1535-3907","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,10,3]]}}}