{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,15]],"date-time":"2025-08-15T00:31:38Z","timestamp":1755217898616,"version":"3.43.0"},"reference-count":34,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2003,6,1]],"date-time":"2003-06-01T00:00:00Z","timestamp":1054425600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2003,6,1]],"date-time":"2003-06-01T00:00:00Z","timestamp":1054425600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Genet Program Evolvable Mach"],"published-print":{"date-parts":[[2003,6]]},"DOI":"10.1023\/a:1023989130306","type":"journal-article","created":{"date-parts":[[2003,6,9]],"date-time":"2003-06-09T12:05:44Z","timestamp":1055160344000},"page":"185-200","source":"Crossref","is-referenced-by-count":16,"title":["Self-Assembly of DNA-like Structures In Silico"],"prefix":"10.1007","volume":"4","author":[{"given":"Max","family":"Garzon","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Derrel","family":"Blain","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kiran","family":"Bobba","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew","family":"Neel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"West","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"5122745_CR1","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1126\/science.7973651","volume":"266","author":"L. M. Adleman","year":"1994","unstructured":"L. M. Adleman, \u201cMolecular computation of solutions to combinatorial problems,\u201d Science, vol. 266, pp. 1021-1024, 1994.","journal-title":"Science"},{"key":"5122745_CR2","unstructured":"A. Alexandrescu, Modern C++ Design, Addison-Wesley Addison-Wesley, pp. 99-119, 2001."},{"key":"5122745_CR3","unstructured":"R. Anderson, \u201cTree data structures for N-body simulation,\u201d in IEEE Symposium on Foundations of Computer Science, 1996."},{"key":"5122745_CR4","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1126\/science.7725109","volume":"268","author":"E. Baum","year":"1995","unstructured":"E. Baum, \u201cBuilding an associative memory vastly larger than the brain,\u201d Science, vol. 268, pp. 583-585, 1995.","journal-title":"Science"},{"key":"5122745_CR5","unstructured":"C. R. Cantor and P. R. Schimmel, Biophysical Chemistry, Part III: The Behavior of Biological Macromolecules Freeman: New York, 1980."},{"key":"5122745_CR6","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1007\/3-540-36109-X","volume-title":"Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002","author":"A. Carbone","year":"2002","unstructured":"A. Carbone N. Seeman, \u201cCircuits and programmable self-assembling nanostructures,\u201d in M. Hagiya and A. Ohuchi (eds.), in Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002, Springer-Verlag, Lecture Notes in Computer Science 2568, Berlin [19], p. 29, 2002."},{"key":"5122745_CR7","doi-asserted-by":"publisher","first-page":"631","DOI":"10.1038\/350631a0","volume":"350","author":"J. Chen","year":"1991","unstructured":"J. Chen and N. C. Seeman, \u201cSynthesis from DNA of a molecule with the connectivity of a cube,\u201d Nature, vol. 350, pp. 631-633, 1991.","journal-title":"Nature"},{"key":"5122745_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"crossref","DOI":"10.1007\/3-540-44992-2","volume-title":"Proc. of the 6th International Workshop on DNA-based Computers. Leiden University, The Netherlands, 2000","author":"A. Condon","year":"2001","unstructured":"A. Condon and G. Rozenberg, DNA Computing (Revised papers), in Proc. of the 6th International Workshop on DNA-based Computers. Leiden University, The Netherlands, 2000, Springer-Verlag, Lecture Notes in Computer Science 2054, Berlin, 2001"},{"key":"5122745_CR9","series-title":"Lecture Notes in Computer Science","first-page":"105","volume-title":"Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002","author":"R. Deaton","year":"2002","unstructured":"R. Deaton, J. Chen, H. Bi, M. Garzon, H. Rubin, and D. H. Wood, \u201cA PCR-based protocol for in-vitro selection of non-crosshybridizing oligonucleotdes,\u201d in M. Hagiya and A. Ohuchi (eds.), in Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002, Springer-Verlag, Lecture Notes in Computer Science 2568, Berlin [19], 2002, pp. 105-114."},{"key":"5122745_CR10","unstructured":"R. Deaton, R. C. Murphy, M. Garzon, D. T. Franceschetti, and S. E. Stevens Jr., \u201cGood encodings for DNA-based solutions to combinatorial problems,\u201d in Proc. of the Second Annual Meeting on DNA Based Computer held at Princeton University, pp. 159-171, 1996."},{"key":"5122745_CR11","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1103\/PhysRevLett.80.417","volume":"80","author":"R. Deaton","year":"1998","unstructured":"R. Deaton, M. Garzon, R. E. Murphy, J. A. Rose, D. R. Franceschetti, and S. E. Stevens Jr., \u201cThe reliability and efficiency of a DNA computation,\u201d Phys. Rev. Lett., vol. 80, pp. 417-420, 1998.","journal-title":"Phys. Rev. Lett."},{"key":"5122745_CR12","volume-title":"Proc. First Conference on Genetic Programming","author":"R. Deaton","year":"1996","unstructured":"R. Deaton, R. C. Murphy, J. A. Rose, M. Garzon, D. T. Franceschetti, and S. E. Stevens Jr., \u201cGenetic search for reliable encodings for DNA-based computation,\u201d in Proc. First Conference on Genetic Programming, J. Koza (ed.), Morgan-Kaufmann: San Mateo, CA, 1996."},{"key":"5122745_CR13","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1162\/106454601753238636","volume":"7","author":"P. Dittrich","year":"2001","unstructured":"P. Dittrich, J. Ziegler, and W. Banzhaf, \u201cArtificial chemistries\u2014a review,\u201d Artificial Life, vol. 7, pp. 225-275, 2001.","journal-title":"Artificial Life"},{"key":"5122745_CR14","doi-asserted-by":"crossref","unstructured":"T. L. Eng, \u201cOn solving 3CNF-satisfiability with an in-vivo algorithm,\u201d in L. Kari, H. Rubin, and D. Wood (eds.), 4th DIMACS Workshop on DNA Computers Biosystems, Elsevier, vol. 53 [22], pp. 135-141, 1999.","DOI":"10.1016\/S0303-2647(99)00040-4"},{"key":"5122745_CR15","unstructured":"H. Gamma, V. Johnson, and A. Vlissides, Design Patterns, Addison-Wesley, pp. 233-242, 1995."},{"key":"5122745_CR16","doi-asserted-by":"crossref","unstructured":"M. Garzon and C. Oehmen, \u201cBiomolecular computation in virtual test tubes,\u201d in L. Kari, H. Rubin, and D. Wood (eds.), 4th DIMACS Workshop on DNA Computers Biosystems, Elsevier, vol. 53 [22], pp. 117-128, 2001.","DOI":"10.1007\/3-540-48017-X_11"},{"key":"5122745_CR17","first-page":"89","volume-title":"Proc. of the 5th workshop, Princeton University","author":"M. Garzon","year":"1999","unstructured":"M. Garzon, R. Deaton, J. A. Rose, and D. R. Franceschetti, \u201cSoft Molecular Computing,\u201d in Proc. of the 5th workshop, Princeton University, in E. Winfree and D. Gifford (eds.), Providence,RI, American Mathematical Society [30], 1999, pp. 89-98."},{"key":"5122745_CR18","series-title":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","first-page":"472","volume-title":"Proc. Second Conference on Genetic Programming","author":"M. Garzon","year":"1996","unstructured":"M. Garzon, P. Neathery, R. Deaton, R. C. Murphy, D. R. Franceschetti, and S. E. Stevens Jr., \u201cA new metric for DNA computing,\u201d in Proc. Second Conference on Genetic Programming, J. Koza (ed.), DIMACS Series in Discrete Mathematics and Theoretical Computer Science, Morgan Kaufmman: San Mateo, CA, 1996, pp. 472-478."},{"key":"5122745_CR19","series-title":"Lecture Notes in Computer Science","volume-title":"Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002","year":"2003","unstructured":"M. Hagiya and A. Ohuchi (eds.), in Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002, Springer-Verlag, Lecture Notes in Computer Science 2568, Berlin, 2003."},{"key":"5122745_CR20","doi-asserted-by":"crossref","unstructured":"S. Ji, \u201cThe cell as the smallest DNA-based molecular computer,\u201d in L. Kari, H. Rubin, and D. Wood (eds.), 4th DIMACS Workshop on DNA Computers Biosystems, Elsevier, vol. 53 [22], pp. 123-133, 1999.","DOI":"10.1016\/S0303-2647(99)00039-8"},{"key":"5122745_CR21","doi-asserted-by":"crossref","unstructured":"N. Jonoska and N. Seeman (eds.), DNA Computing (Revised papers) in Proc. of the 7th International Workshop on DNA-based Computers. U. of South Florida, Tampa, 2001, Springer-Verlag, Lecture Notes in Computer Science 2340, Berlin, 2002.","DOI":"10.1007\/3-540-48017-X"},{"key":"5122745_CR22","unstructured":"L. Kari, H. Rubin, and D. Wood (eds.), 4th DIMACS Workshop on DNA Computers Biosystems, Elsevier, vol. 53, pp. 1-3, 1999."},{"key":"5122745_CR23","series-title":"Lecture Notes in Computer Science","first-page":"31","volume-title":"Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002","author":"D. Liu","year":"2001","unstructured":"D. Liu, J. H. Reif, and T. LaBean, \u201cDNA Nanotubes: Construction and Characterization of Filaments Composed of TX-tile Lattice,\u201d in M. Hagiya and A. Ohuchi (eds.), in Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002, Springer-Verlag, Lecture Notes in Computer Science 2568, Berlin [19], pp. 31-38, 2001."},{"key":"5122745_CR24","doi-asserted-by":"publisher","first-page":"609","DOI":"10.1016\/S1367-5931(00)00140-X","volume":"4","author":"C. M. Niemeyer","year":"2000","unstructured":"C. M. Niemeyer, \u201cSelf-assembled nanostructures based on DNA: towards the development of nanobiotechnology,\u201d Current Opinion in Chemical Biology, vol. 4, pp. 609-618, 2000.","journal-title":"Current Opinion in Chemical Biology"},{"key":"5122745_CR25","series-title":"Lecture Notes in Computer Science","first-page":"79","volume-title":"Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002","author":"N. Nishida","year":"2001","unstructured":"N. Nishida, M. Wakui, Y. Ohashi, K. Tokunaga, and A. Suyama, \u201cHighly specific and quantitative gene expression profiling based on DNA computing,\u201d in M. Hagiya and A. Ohuchi (eds.), in Proceedings of the 8th Int. Meeting on DNA Based Computers, Hokkaido University, June, 2002, Springer-Verlag, Lecture Notes in Computer Science 2568, Berlin [19], p. 79, 2001."},{"key":"5122745_CR26","doi-asserted-by":"crossref","unstructured":"T. Schlick, Molecular Modeling and Simulation. Series in Mathematical Biology, Springer Verlag, 2002.","DOI":"10.1007\/978-0-387-22464-0"},{"key":"5122745_CR27","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1016\/S0167-7799(99)01360-8","volume":"17","author":"N. C. Seeman","year":"1999","unstructured":"N. C. Seeman, \u201cDNA engineering and its application to nanotechnology,\u201d Trends in Biotechnology, vol. 17, pp. 437-443, 1999.","journal-title":"Trends in Biotechnology"},{"key":"5122745_CR28","unstructured":"J. Spencer, Ten Lectures on the Probabilistic Method, CMBS-NSF Series in Applied Mathematics SIAM, p. 17, 1987."},{"key":"5122745_CR29","series-title":"DIMACS Series in Discrete Mathematics and Theoretical Computer Science","first-page":"1","volume-title":"Proc. 3rd DIMACS Workshop on DNA-Based Computers, DNA-Based Computers, U. of Pennsylvania, 1997","author":"J. G. Wetmur","year":"1999","unstructured":"J. G. Wetmur, \u201cPhysical Chemistry of Nucleic Acid Hybridization,\u201d in Proc. 3rd DIMACS Workshop on DNA-Based Computers, DNA-Based Computers, U. of Pennsylvania, 1997, H. Rubin and D. Wood (eds.), DIMACS Series in Discrete Mathematics and Theoretical Computer Science, Providence, RI, American Mathematical Society, vol. 48, 1999, pp. 1-23."},{"key":"5122745_CR30","first-page":"1","volume-title":"5th International Metting on DNA Based Computers, MIT, Boston, MA, 1999","year":"2000","unstructured":"E. Winfree and D. Gifford (eds.),in 5th International Metting on DNA Based Computers, MIT, Boston, MA, 1999, Providence, RI, American Mathematical Society, 2000, pp. 1-23."},{"key":"5122745_CR31","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/28998","volume":"394","author":"E. Winfree","year":"1998","unstructured":"E. Winfree, E. F. Liu, L. A. Wenzler, and N. C. Seeman, \u201cDesign and self-assembly of two-dimensional DNA crystals,\u201d Nature, vol. 394, pp. 539-544, 1998.","journal-title":"Nature"},{"key":"5122745_CR32","doi-asserted-by":"crossref","unstructured":"D. H. Wood, J. Chen, B. Lemieux, and W. Cede\u00f1o, \u201cA design for DNA computation of the OneMax problem,\u201d in Soft Computing, vol. 5, M. Garzon and M. Conrad (eds.), 2001, pp. 19-24","DOI":"10.1007\/s005000000063"},{"key":"5122745_CR33","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1038\/415644a","volume":"415","author":"H. Zhang","year":"2002","unstructured":"H. Zhang, H. X. Yan, Z. Shen, and N. C. Seeman, \u201cA robust DNA mechanical device controlled by hybridization topology,\u201d Nature, vol. 415, pp. 62-65, 2002.","journal-title":"Nature"},{"key":"5122745_CR34","doi-asserted-by":"publisher","first-page":"605","DOI":"10.1038\/35020524","volume":"406","author":"B. Yurke","year":"2000","unstructured":"B. Yurke, A. J. Turberfield, A. P. Mills, F. C. Simmel, and J. L. Neumann, \u201cA DNA-fuelled molecular machine made of DNA,\u201d Nature, vol. 406, pp. 605-608, 2000.","journal-title":"Nature"}],"container-title":["Genetic Programming and Evolvable Machines"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1023\/A:1023989130306.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1023\/A:1023989130306\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1023\/A:1023989130306.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,8,5]],"date-time":"2025-08-05T21:02:13Z","timestamp":1754427733000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1023\/A:1023989130306"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,6]]},"references-count":34,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2003,6]]}},"alternative-id":["5122745"],"URL":"https:\/\/doi.org\/10.1023\/a:1023989130306","relation":{},"ISSN":["1389-2576","1573-7632"],"issn-type":[{"type":"print","value":"1389-2576"},{"type":"electronic","value":"1573-7632"}],"subject":[],"published":{"date-parts":[[2003,6]]}}}