{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T01:52:58Z","timestamp":1792720378799,"version":"4.5.0"},"reference-count":72,"publisher":"Springer Science and Business Media LLC","issue":"9","license":[{"start":{"date-parts":[[2013,8,6]],"date-time":"2013-08-06T00:00:00Z","timestamp":1375747200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Cell Res"],"published-print":{"date-parts":[[2013,9]]},"DOI":"10.1038\/cr.2013.104","type":"journal-article","created":{"date-parts":[[2013,8,6]],"date-time":"2013-08-06T06:36:57Z","timestamp":1375771017000},"page":"1091-1105","source":"Crossref","is-referenced-by-count":108,"title":["Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator"],"prefix":"10.1038","volume":"23","author":[{"given":"Qiu-Hong","family":"Wan","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sheng-Kai","family":"Pan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peng-Wei","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jin-Quan","family":"Xia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hui","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gen-Yun","family":"He","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"He","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiao-Wei","family":"Ni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hao-Long","family":"Hou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sheng-Guang","family":"Liao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hai-Qiong","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shu-Kun","family":"Gao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yun-Fa","family":"Ge","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chang-Chang","family":"Cao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peng-Fei","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li-Ming","family":"Fang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Liao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shu","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Meng-Zhen","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Dong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sheng-Guo","family":"Fang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2013,8,6]]},"reference":[{"key":"BFcr2013104_CR1","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1038\/nature10390","volume":"477","author":"J Alfoldi","year":"2011","unstructured":"Alfoldi J, Di Palma F, Grabherr M, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 2011; 477:587\u2013591.","journal-title":"Nature"},{"key":"BFcr2013104_CR2","unstructured":"Brown B . An ancestral crocodile. Novitates: American Museum of Natural History, 1933; 638:1\u20134."},{"key":"BFcr2013104_CR3","first-page":"143","volume":"97","author":"EH Colbert","year":"1951","unstructured":"Colbert EH, Mook CC . The ancestral crocodilian Protosuchus. Bull Am Mus Nat Hist 1951; 97:143\u2013182.","journal-title":"Bull Am Mus Nat Hist"},{"key":"BFcr2013104_CR4","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1111\/j.1748-1716.1961.tb02261.x","volume":"53","author":"HT Andersen","year":"1961","unstructured":"Andersen HT . Physiological adjustments to prolonged diving in the American alligator, Alligator mississippiensis. Acta Physiol Scand 1961; 53:23\u201345.","journal-title":"Acta Physiol Scand"},{"key":"BFcr2013104_CR5","doi-asserted-by":"publisher","first-page":"804","DOI":"10.2307\/1445682","volume":"1987","author":"FE Fish","year":"1987","unstructured":"Fish FE, Cosgrove LA . Behavioral thermoregulation of small American alligators in water: postural changes in relation to the thermal environment. Copeia 1987; 1987:804\u2013807.","journal-title":"Copeia"},{"key":"BFcr2013104_CR6","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1007\/s10750-007-9030-4","volume":"595","author":"S Martin","year":"2008","unstructured":"Martin S . Global diversity of crocodiles (Crocodilia, Reptilia) in freshwater. Hydrobiologia 2008; 595:587\u2013591.","journal-title":"Hydrobiologia"},{"key":"BFcr2013104_CR7","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1111\/j.1365-2435.2009.01599.x","volume":"24","author":"HA Campbell","year":"2010","unstructured":"Campbell HA, Sullivan S, Read MA, Gordos MA, Franklin CE . Ecological and physiological determinants of dive duration in the freshwater crocodile. Funct Ecol 2010; 24:103\u2013111.","journal-title":"Funct Ecol"},{"key":"BFcr2013104_CR8","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1242\/jeb.130.1.433","volume":"130","author":"JC Wright","year":"1987","unstructured":"Wright JC, Kirshner DS . Allometry of lung-volume during voluntary submergence in the saltwater crocodile Crocodylus porosus. J Exp Biol 1987; 130:433\u2013436.","journal-title":"J Exp Biol"},{"key":"BFcr2013104_CR9","doi-asserted-by":"crossref","unstructured":"Huchzermeyer FW, eds. Crocodiles: Biology, Husbandry and Diseases. Cambridge: CABI Publishing, 2003.","DOI":"10.1079\/9780851996561.0000"},{"key":"BFcr2013104_CR10","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1086\/physzool.60.5.30156126","volume":"60","author":"JC Wright","year":"1987","unstructured":"Wright JC . Energy metabolism during unrestrained submergence in the saltwater crocodile Crocodylus porosus. Physiol Zool 1987; 60:515\u2013523.","journal-title":"Physiol Zool"},{"key":"BFcr2013104_CR11","doi-asserted-by":"crossref","unstructured":"Thorbjarnarson J, Wang X, eds. The Chinese Alligator: Ecology, Behavior, Conservation and Culture. Baltimore: The Johns Hopkins Universiity Press, 2010.","DOI":"10.56021\/9780801893483"},{"key":"BFcr2013104_CR12","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1016\/0378-5955(89)90026-9","volume":"37","author":"O Gleich","year":"1989","unstructured":"Gleich O . Auditory primary afferents in the starling: Correlation of function and morphology. Hear Res 1989; 37:255\u2013267.","journal-title":"Hear Res"},{"key":"BFcr2013104_CR13","doi-asserted-by":"publisher","first-page":"1498","DOI":"10.1073\/pnas.68.7.1498","volume":"68","author":"EG Wever","year":"1971","unstructured":"Wever EG . Hearing in the crocodilia. Proc Natl Acad Sci USA 1971; 68:1498\u20131500.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR14","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1007\/s00359-002-0296-8","volume":"188","author":"D Higgs","year":"2002","unstructured":"Higgs D, Brittan-Powell E, Soares D, et al. Amphibious auditory responses of the American alligator (Alligator mississipiensis). J Comp Physiol A 2002; 188:217\u2013223.","journal-title":"J Comp Physiol A"},{"key":"BFcr2013104_CR15","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1016\/j.cbpb.2005.10.005","volume":"143","author":"ME Merchant","year":"2006","unstructured":"Merchant ME, Mills K, Leger N, Jerkins E, Vliet KA, McDaniel N . Comparisons of innate immune activity of all known living crocodylian species. Comp Biochem Physiol B Biochem Mol Biol 2006; 143:133\u2013137.","journal-title":"Comp Biochem Physiol B Biochem Mol Biol"},{"key":"BFcr2013104_CR16","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1016\/j.vetimm.2005.10.001","volume":"110","author":"ME Merchant","year":"2006","unstructured":"Merchant ME, Leger N, Jerkins E, et al. Broad spectrum antimicrobial activity of leukocyte extracts from the American alligator (Alligator mississippiensis). Vet Immunol Immunopathol 2006; 110:221\u2013228.","journal-title":"Vet Immunol Immunopathol"},{"key":"BFcr2013104_CR17","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1086\/417143","volume":"66","author":"FJ Janzen","year":"1991","unstructured":"Janzen FJ, Paukstis GL . Environmental sex determination in reptiles: ecology, evolution, and experimental design. Q Rev Biol 1991; 66:149\u2013179.","journal-title":"Q Rev Biol"},{"key":"BFcr2013104_CR18","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1038\/nature03154","volume":"432","author":"LW Hillier","year":"2004","unstructured":"Hillier LW, Miller W, Birney E, et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004; 432:695\u2013716.","journal-title":"Nature"},{"key":"BFcr2013104_CR19","doi-asserted-by":"publisher","first-page":"e1000475","DOI":"10.1371\/journal.pbio.1000475","volume":"8","author":"RA Dalloul","year":"2010","unstructured":"Dalloul RA, Long JA, Zimin AV, et al. Multi-platform next-generation sequencing of the domestic Turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol 2010; 8:e1000475.","journal-title":"PLoS Biol"},{"key":"BFcr2013104_CR20","doi-asserted-by":"publisher","first-page":"757","DOI":"10.1038\/nature08819","volume":"464","author":"WC Warren","year":"2010","unstructured":"Warren WC, Clayton DF, Ellegren H, et al. The genome of a songbird. Nature 2010; 464:757\u2013762.","journal-title":"Nature"},{"key":"BFcr2013104_CR21","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1159\/000130080","volume":"9","author":"MM Cohen","year":"1970","unstructured":"Cohen MM, Gans C . The chromosomes of the order Crocodilia. Cytogenetics 1970; 9:81\u2013105.","journal-title":"Cytogenetics"},{"key":"BFcr2013104_CR22","doi-asserted-by":"publisher","first-page":"787","DOI":"10.1016\/j.ympev.2007.02.005","volume":"43","author":"RE Willis","year":"2007","unstructured":"Willis RE, McAliley LR, Neeley ED, Densmore LD . Evidence for placing the false gharial (Tomistoma schlegelii) into the family Gavialidae: inferences from nuclear gene sequences. Mol Phylogenet Evol 2007; 43:787\u2013794.","journal-title":"Mol Phylogenet Evol"},{"key":"BFcr2013104_CR23","doi-asserted-by":"publisher","first-page":"152","DOI":"10.1017\/S0030605300030416","volume":"33","author":"J Thorbjarnarson","year":"1999","unstructured":"Thorbjarnarson J, Wang X . The conservation status of the Chinese alligator. Oryx 1999; 33:152\u2013159.","journal-title":"Oryx"},{"key":"BFcr2013104_CR24","doi-asserted-by":"publisher","first-page":"2586","DOI":"10.1007\/s11434-011-4615-8","volume":"56","author":"ZH Wang","year":"2011","unstructured":"Wang ZH, Yao H, Ding YZ, John T, Wang XM . Testing reintroduction as a conservation strategy for the critically endangered Chinese alligator: movements and home range of released captive individuals. Chin Sci Bull 2011; 56:2586\u20132593.","journal-title":"Chin Sci Bull"},{"key":"BFcr2013104_CR25","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1101\/gr.097261.109","volume":"20","author":"R Li","year":"2010","unstructured":"Li R, Zhu H, Ruan J, et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010; 20:265\u2013272.","journal-title":"Genome Res"},{"key":"BFcr2013104_CR26","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1186\/1471-2164-10-146","volume":"10","author":"M Costantini","year":"2009","unstructured":"Costantini M, Cammarano R, Bernardi G . The evolution of isochore patterns in vertebrate genomes. BMC Genomics 2009; 10:146.","journal-title":"BMC Genomics"},{"key":"BFcr2013104_CR27","doi-asserted-by":"publisher","first-page":"2869","DOI":"10.1073\/pnas.96.6.2869","volume":"96","author":"N Gilbert","year":"1999","unstructured":"Gilbert N, Labuda D . CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs. Proc Natl Acad Sci USA 1999; 96:2869\u20132874.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR28","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1038\/nmeth.1527","volume":"8","author":"C Alkan","year":"2011","unstructured":"Alkan C, Sajjadian S, Eichler EE . Limitations of next-generation genome sequence assembly. Nat Methods 2011; 8:61\u201365.","journal-title":"Nat Methods"},{"key":"BFcr2013104_CR29","doi-asserted-by":"publisher","first-page":"909","DOI":"10.1038\/ng.172","volume":"40","author":"X She","year":"2008","unstructured":"She X, Cheng Z, Zollner S, Church DM, Eichler EE . Mouse segmental duplication and copy number variation. Nat Genet 2008; 40:909\u2013914.","journal-title":"Nat Genet"},{"key":"BFcr2013104_CR30","doi-asserted-by":"publisher","first-page":"611","DOI":"10.1016\/j.tig.2004.09.011","volume":"20","author":"LH Wong","year":"2004","unstructured":"Wong LH, Choo KHA . Evolutionary dynamics of transposable elements at the centromere. Trends Genet 2004; 20:611\u2013616.","journal-title":"Trends Genet"},{"key":"BFcr2013104_CR31","doi-asserted-by":"publisher","first-page":"946","DOI":"10.1038\/ng.2343","volume":"44","author":"Q Qiu","year":"2012","unstructured":"Qiu Q, Zhang G, Ma T, et al. The yak genome and adaptation to life at high altitude. Nat Genet 2012; 44:946\u2013949.","journal-title":"Nat Genet"},{"key":"BFcr2013104_CR32","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1038\/nature10158","volume":"475","author":"X Xu","year":"2011","unstructured":"Xu X, Pan S, Cheng S, et al. Genome sequence and analysis of the tuber crop potato. Nature 2011; 475:189\u2013195.","journal-title":"Nature"},{"key":"BFcr2013104_CR33","doi-asserted-by":"crossref","first-page":"1671","DOI":"10.1242\/jeb.203.11.1671","volume":"203","author":"CG Farmer","year":"2000","unstructured":"Farmer CG, Carrier DR . Ventilation and gas exchange during treadmill locomotion in the American alligator (Alligator mississippiensis). J Exp Biol 2000; 203:1671\u20131678.","journal-title":"J Exp Biol"},{"key":"BFcr2013104_CR34","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1038\/373244a0","volume":"373","author":"NH Komiyama","year":"1995","unstructured":"Komiyama NH, Miyazaki G, Tame J, Nagai K . Transplanting a unique allosteric effect from crocodile into human haemoglobin. Nature 1995; 373:244\u2013246.","journal-title":"Nature"},{"key":"BFcr2013104_CR35","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1007\/s00424-003-1180-2","volume":"447","author":"MF Romero","year":"2004","unstructured":"Romero MF, Fulton CM, Boron WF . The SLC4 family of HCO3\u2212 transporters. Pfl\u00fcgers Archiv 2004; 447:495\u2013509.","journal-title":"Pfl\u00fcgers Archiv"},{"key":"BFcr2013104_CR36","first-page":"R661","volume":"274","author":"FB Jensen","year":"1998","unstructured":"Jensen FB, Wang T, Jones DR, Brahm J . Carbon dioxide transport in alligator blood and its erythrocyte permeability to anions and water. Am J Physiol 1998; 274:R661\u2013R671.","journal-title":"Am J Physiol"},{"key":"BFcr2013104_CR37","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1016\/j.tibs.2008.01.001","volume":"33","author":"I Letunic","year":"2008","unstructured":"Letunic I, Yamada T, Kanehisa M, Bork P . iPath: interactive exploration of biochemical pathways and networks. Trends Biochem Sci 2008; 33:101\u2013103.","journal-title":"Trends Biochem Sci"},{"key":"BFcr2013104_CR38","doi-asserted-by":"publisher","first-page":"35","DOI":"10.2174\/1874196701104010035","volume":"4","author":"O Carvalho","year":"2011","unstructured":"Carvalho O, Gon\u00e7alves C, G\u00f3mez-Soler M, et al. Comparative physiology of the respiratory system in the animal kingdom. Open Biol J 2011; 4:35\u201346.","journal-title":"Open Biol J"},{"key":"BFcr2013104_CR39","doi-asserted-by":"publisher","first-page":"7457","DOI":"10.1073\/pnas.87.19.7457","volume":"87","author":"D Brown","year":"1990","unstructured":"Brown D, Zhu XL, Sly WS . Localization of membrane-associated carbonic anhydrase type IV in kidney epithelial cells. Proc Natl Acad Sci USA 1990; 87:7457\u20137461.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR40","doi-asserted-by":"publisher","first-page":"15975","DOI":"10.1074\/jbc.M308528200","volume":"279","author":"N Bakouh","year":"2004","unstructured":"Bakouh N, Benjelloun F, Hulin P, et al. NH3 is involved in the NH4+ transport induced by the functional expression of the human Rh C glycoprotein. J Biol Chem 2004; 279:15975\u201315983.","journal-title":"J Biol Chem"},{"key":"BFcr2013104_CR41","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1046\/j.1365-2362.2001.0310s2001.x","volume":"31","author":"PH Joubert","year":"2001","unstructured":"Joubert PH, Grossmann M . Local and systemic effects of Na+\/K+ATPase inhibition. Eur J Clin Invest 2001; 31:1\u20134.","journal-title":"Eur J Clin Invest"},{"key":"BFcr2013104_CR42","doi-asserted-by":"publisher","first-page":"134","DOI":"10.1161\/CIRCULATIONAHA.106.659086","volume":"116","author":"A Medeiros-Domingo","year":"2007","unstructured":"Medeiros-Domingo A, Kaku T, Tester DJ, et al. SCN4B-encoded sodium channel beta4 subunit in congenital long-QT syndrome. Circulation 2007; 116:134\u2013142.","journal-title":"Circulation"},{"key":"BFcr2013104_CR43","doi-asserted-by":"publisher","first-page":"1428","DOI":"10.1093\/europace\/eus150","volume":"14","author":"JT Delaney","year":"2012","unstructured":"Delaney JT, Muhammad R, Blair MA, et al. A KCNJ8 mutation associated with early repolarization and atrial fibrillation. Europace 2012; 14:1428\u20131432.","journal-title":"Europace"},{"key":"BFcr2013104_CR44","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1016\/S0888-7543(03)00022-3","volume":"81","author":"AH Liu","year":"2003","unstructured":"Liu AH, Zhang X, Stolovitzky GA, Califano A, Firestein SJ . Motif-based construction of a functional map for mammalian olfactory receptors. Genomics 2003; 81:443\u2013456.","journal-title":"Genomics"},{"key":"BFcr2013104_CR45","doi-asserted-by":"publisher","first-page":"12235","DOI":"10.1073\/pnas.1635157100","volume":"100","author":"Y Niimura","year":"2003","unstructured":"Niimura Y, Nei M . Evolution of olfactory receptor genes in the human genome. Proc Natl Acad Sci USA 2003; 100:12235\u201312240.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR46","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1002\/ajmg.b.30465","volume":"144B","author":"S Inoue","year":"2007","unstructured":"Inoue S, Imamura A, Okazaki Y, et al. Synaptotagmin XI as a candidate gene for susceptibility to schizophrenia. Am J Med Genet B Neuropsychiatr Genet 2007; 144B:332\u2013340.","journal-title":"Am J Med Genet B Neuropsychiatr Genet"},{"key":"BFcr2013104_CR47","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1186\/1744-9081-7-13","volume":"7","author":"J Yu","year":"2011","unstructured":"Yu J, He X, Yao D, Li Z, Li H, Zhao Z . A sex-specific association of common variants of neuroligin genes (NLGN3 and NLGN4X) with autism spectrum disorders in a Chinese Han cohort. Behav Brain Funct 2011; 7:13.","journal-title":"Behav Brain Funct"},{"key":"BFcr2013104_CR48","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1186\/gb-2005-6-3-213","volume":"6","author":"A Terakita","year":"2005","unstructured":"Terakita A . The opsins. Genome Biol 2005; 6:213.","journal-title":"Genome Biol"},{"key":"BFcr2013104_CR49","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1016\/S0896-6273(01)00249-5","volume":"29","author":"VJ Kefalov","year":"2001","unstructured":"Kefalov VJ, Crouch RK, Cornwall MC . Role of noncovalent binding of 11-cis-retinal to opsin in dark adaptation of rod and cone photoreceptors. Neuron 2001; 29:749\u2013755.","journal-title":"Neuron"},{"key":"BFcr2013104_CR50","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1016\/j.ydbio.2004.09.001","volume":"276","author":"I Hughes","year":"2004","unstructured":"Hughes I, Blasiole B, Huss D, et al. Otopetrin 1 is required for otolith formation in the zebrafish Danio rerio. Dev Biol 2004; 276:391\u2013402.","journal-title":"Dev Biol"},{"key":"BFcr2013104_CR51","doi-asserted-by":"publisher","first-page":"497","DOI":"10.1071\/MF04267","volume":"56","author":"AN Popper","year":"2005","unstructured":"Popper AN, Ramcharitar J, Campana SE . Why otoliths? Insights from inner ear physiology and fisheries biology. Mar Freshw Res 2005; 56:497\u2013504.","journal-title":"Mar Freshw Res"},{"key":"BFcr2013104_CR52","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1111\/tra.12026","volume":"14","author":"AR Mantegazza","year":"2013","unstructured":"Mantegazza AR, Magalhaes JG, Amigorena S, Marks MS . Presentation of phagocytosed antigens by MHC class I and II. Traffic 2013; 14:135\u2013152.","journal-title":"Traffic"},{"key":"BFcr2013104_CR53","doi-asserted-by":"publisher","first-page":"849","DOI":"10.1038\/nri2413","volume":"8","author":"K Ozato","year":"2008","unstructured":"Ozato K, Shin D-M, Chang T-H, Morse HC, III . TRIM family proteins and their emerging roles in innate immunity. Nat Rev Immunol 2008; 8:849\u2013860.","journal-title":"Nat Rev Immunol"},{"key":"BFcr2013104_CR54","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1016\/j.smim.2008.06.004","volume":"20","author":"MG Brown","year":"2008","unstructured":"Brown MG, Scalzo AA . NK gene complex dynamics and selection for NK cell receptors. Semin Immunol 2008; 20:361\u2013368.","journal-title":"Semin Immunol"},{"key":"BFcr2013104_CR55","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1016\/j.it.2011.09.007","volume":"33","author":"L Abeler-D\u00f6rner","year":"2012","unstructured":"Abeler-D\u00f6rner L, Swamy M, Williams G, Hayday AC, Bas A . Butyrophilins: an emerging family of immune regulators. Trends Immunol 2012; 33:34\u201341.","journal-title":"Trends Immunol"},{"key":"BFcr2013104_CR56","first-page":"S58","volume":"93","author":"R Leelawongtawon","year":"2010","unstructured":"Leelawongtawon R, Siruntawineti J, Chaeychomsri W, Sattaponpan C . Antibacterial and antifungal activities from Siamese crocodile blood. J Med Assoc Thai 2010; 93:S58\u2013S64.","journal-title":"J Med Assoc Thai"},{"key":"BFcr2013104_CR57","first-page":"3121","volume":"7","author":"S Preecharram","year":"2008","unstructured":"Preecharram S, Daduang S, Bunyatratchata W, Araki T, Thammasirirak S . Antibacterial activity from Siamese crocodile (Crocodylus siamensis) serum. Afr J Biotechnol 2008; 7:3121\u20133128.","journal-title":"Afr J Biotechnol"},{"key":"BFcr2013104_CR58","doi-asserted-by":"publisher","first-page":"3942","DOI":"10.1111\/j.1742-4658.2011.08302.x","volume":"278","author":"A Cederlund","year":"2011","unstructured":"Cederlund A, Gudmundsson GH, Agerberth B . Antimicrobial peptides important in innate immunity. FEBS J 2011; 278:3942\u20133951.","journal-title":"FEBS J"},{"key":"BFcr2013104_CR59","doi-asserted-by":"publisher","first-page":"120","DOI":"10.1002\/bies.10400","volume":"26","author":"CA Smith","year":"2004","unstructured":"Smith CA, Sinclair AH . Sex determination: insights from the chicken. Bioessays 2004; 26:120\u2013132.","journal-title":"Bioessays"},{"key":"BFcr2013104_CR60","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1007\/s10577-009-9056-8","volume":"17","author":"HA McQueen","year":"2009","unstructured":"McQueen HA, Clinton M . Avian sex chromosomes: dosage compensation matters. Chromosome Res 2009; 17:687\u2013697.","journal-title":"Chromosome Res"},{"key":"BFcr2013104_CR61","doi-asserted-by":"publisher","first-page":"1992","DOI":"10.1093\/molbev\/msi198","volume":"22","author":"N Backstrom","year":"2005","unstructured":"Backstrom N, Ceplitis H, Berlin S, Ellegren H . Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome. Mol Biol Evol 2005; 22:1992\u20131999.","journal-title":"Mol Biol Evol"},{"key":"BFcr2013104_CR62","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1007\/s00427-006-0117-0","volume":"217","author":"Y Zhao","year":"2007","unstructured":"Zhao Y, Lu H, Yu HS, Cheng HH, Zhou RJ . Multiple alternative splicing in gonads of chicken DMRT1. Dev Genes Evol 2007; 217:119\u2013126.","journal-title":"Dev Genes Evol"},{"key":"BFcr2013104_CR63","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1016\/j.gene.2008.08.005","volume":"425","author":"A Anand","year":"2008","unstructured":"Anand A, Patel M, Lalremruata A, et al. Multiple alternative splicing of DMRT1 during gonadogenesis in Indian mugger, a species exhibiting temperature-dependent sex determination. Gene 2008; 425:56\u201363.","journal-title":"Gene"},{"key":"BFcr2013104_CR64","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1186\/1477-7827-4-59","volume":"4","author":"P Manolakou","year":"2006","unstructured":"Manolakou P, Lavranos G, Angelopoulou R . Molecular patterns of sex determination in the animal kingdom: a comparative study of the biology of reproduction. Reprod Biol Endocrinol 2006; 4:59.","journal-title":"Reprod Biol Endocrinol"},{"key":"BFcr2013104_CR65","doi-asserted-by":"publisher","first-page":"2469","DOI":"10.1073\/pnas.0712244105","volume":"105","author":"S Yoshimoto","year":"2008","unstructured":"Yoshimoto S, Okada E, Umemoto H, et al. A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis. Proc Natl Acad Sci USA 2008; 105:2469\u20132474.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR66","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1038\/nature751","volume":"417","author":"M Matsuda","year":"2002","unstructured":"Matsuda M, Nagahama Y, Shinomiya A, et al. DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature 2002; 417:559\u2013563.","journal-title":"Nature"},{"key":"BFcr2013104_CR67","unstructured":"SFA. Status Quo and Future of Conservation for Chinese Alligator and Crocodiles in the World. International Workshop on Conservation and Reintroduction of Chinese Alligator. Beijing: Chinese Forestry Publishing House, 2002."},{"key":"BFcr2013104_CR68","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1038\/nature10231","volume":"475","author":"H Li","year":"2011","unstructured":"Li H, Durbin R . Inference of human population history from individual whole-genome sequences. Nature 2011; 475:493\u2013496.","journal-title":"Nature"},{"key":"BFcr2013104_CR69","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1016\/j.quaint.2006.02.002","volume":"154","author":"SZ Zhou","year":"2006","unstructured":"Zhou SZ, Wang XL, Wang J, Xu LB . A preliminary study on timing of the oldest Pleistocene glaciation in Qinghai-Tibetan Plateau. Quat Int 2006; 154:44\u201351.","journal-title":"Quat Int"},{"key":"BFcr2013104_CR70","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1016\/j.tig.2004.03.004","volume":"20","author":"SB Hedges","year":"2004","unstructured":"Hedges SB, Kumar S . Precision of molecular time estimates. Trends Genet 2004; 20:242\u2013247.","journal-title":"Trends Genet"},{"key":"BFcr2013104_CR71","doi-asserted-by":"publisher","first-page":"8655","DOI":"10.1073\/pnas.0701985104","volume":"104","author":"CM Beall","year":"2007","unstructured":"Beall CM . Two routes to functional adaptation: Tibetan and Andean high-altitude natives. Proc Natl Acad Sci USA 2007; 104:8655\u20138660.","journal-title":"Proc Natl Acad Sci USA"},{"key":"BFcr2013104_CR72","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1016\/j.physbeh.2011.02.009","volume":"103","author":"MA Urbina","year":"2011","unstructured":"Urbina MA, Forster ME, Glover CN . Leap of faith: voluntary emersion behaviour and physiological adaptations to aerial exposure in a non-aestivating freshwater fish in response to aquatic hypoxia. Physiol Behav 2011; 103:240\u2013247.","journal-title":"Physiol Behav"}],"container-title":["Cell Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/www.nature.com\/articles\/cr2013104.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/www.nature.com\/articles\/cr2013104","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/www.nature.com\/articles\/cr2013104.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,15]],"date-time":"2024-05-15T22:54:33Z","timestamp":1715813673000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/cr2013104"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,8,6]]},"references-count":72,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2013,9]]}},"alternative-id":["BFcr2013104"],"URL":"https:\/\/doi.org\/10.1038\/cr.2013.104","relation":{},"ISSN":["1001-0602","1748-7838"],"issn-type":[{"value":"1001-0602","type":"print"},{"value":"1748-7838","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,8,6]]}}}