{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T04:37:23Z","timestamp":1790829443682,"version":"4.1.0"},"reference-count":93,"publisher":"Oxford University Press (OUP)","issue":"8","license":[{"start":{"date-parts":[[2011,3,10]],"date-time":"2011-03-10T00:00:00Z","timestamp":1299715200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/pages\/standard-publication-reuse-rights"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Coral reefs are highly productive ecosystems bathed in unproductive, low-nutrient oceanic waters, where microbially dominated food webs are supported largely by bacterioplankton recycling of dissolved compounds. Despite evidence that benthic reef organisms efficiently scavenge particulate organic matter and inorganic nutrients from advected oceanic waters, our understanding of the role of bacterioplankton and dissolved organic matter (DOM) in the interaction between reefs and the surrounding ocean remains limited. In this study, we present the results of a 4-year study conducted in a well-characterized coral reef ecosystem (Paopao Bay, Moorea, French Polynesia) where changes in bacterioplankton abundance and dissolved organic carbon (DOC) concentrations were quantified and bacterial community structure variation was examined along spatial gradients of the reef:ocean interface. Our results illustrate that the reef is consistently depleted in concentrations of both DOC and bacterioplankton relative to offshore waters (averaging 79\u2009\u03bcmol\u2009l\u22121 DOC and 5.5 \u00d7 108 cells l\u22121 offshore and 68\u2009\u03bcmol\u2009l\u22121 DOC and 3.1 \u00d7 108 cells l\u22121 over the reef, respectively) across a 4-year time period. In addition, using a suite of culture-independent measures of bacterial community structure, we found consistent differentiation of reef bacterioplankton communities from those offshore or in a nearby embayment across all taxonomic levels. Reef habitats were enriched in Gamma-, Delta-, and Betaproteobacteria, Bacteriodetes, Actinobacteria and Firmicutes. Specific bacterial phylotypes, including members of the SAR11, SAR116, Flavobacteria, and Synechococcus clades, exhibited clear gradients in relative abundance among nearshore habitats. Our observations indicate that this reef system removes oceanic DOC and exerts selective pressures on bacterioplankton community structure on timescales approximating reef water residence times, observations which are notable both because fringing reefs do not exhibit long residence times (unlike those characteristic of atoll lagoons) and because oceanic DOC is generally recalcitrant to degradation by ambient microbial assemblages. Our findings thus have interesting implications for the role of oceanic DOM and bacterioplankton in the ecology and metabolism of reef ecosystems.<\/jats:p>","DOI":"10.1038\/ismej.2011.12","type":"journal-article","created":{"date-parts":[[2011,3,10]],"date-time":"2011-03-10T06:41:57Z","timestamp":1299739317000},"page":"1374-1387","source":"Crossref","is-referenced-by-count":123,"title":["Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem"],"prefix":"10.1093","volume":"5","author":[{"given":"Craig E","family":"Nelson","sequence":"first","affiliation":[{"name":"Marine Science Institute, University of California , Santa Barbara, CA , USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alice L","family":"Alldredge","sequence":"additional","affiliation":[{"name":"Marine Science Institute, University of California , Santa Barbara, CA , USA"},{"name":"Department of Ecology, Evolution and Marine Biology, University of California , Santa Barbara, CA , USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elizabeth A","family":"McCliment","sequence":"additional","affiliation":[{"name":"The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory , Woods Hole, MA , USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda A","family":"Amaral-Zettler","sequence":"additional","affiliation":[{"name":"The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory , Woods Hole, MA , USA"},{"name":"Department of Geological Sciences, Brown University , Providence, RI , USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Craig A","family":"Carlson","sequence":"additional","affiliation":[{"name":"Marine Science Institute, University of California , Santa Barbara, CA , USA"},{"name":"Department of Ecology, Evolution and Marine Biology, University of California , Santa Barbara, CA , USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2011,3,10]]},"reference":[{"key":"2024020218224959400_CR1","doi-asserted-by":"crossref","first-page":"105","DOI":"10.3354\/meps159105","article-title":"Factors influencing spatial patterns on coral reefs around Moorea, French Polynesia","volume":"159","author":"Adjeroud","year":"1997","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR2","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1007\/s003380050079","article-title":"Trophic functioning of the Tiahura reef sector, Moorea Island, French Polynesia","volume":"16","author":"Arias-Gonzalez","year":"1997","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR3","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1007\/BF00367231","article-title":"Retention of phytoplankton and planktonic microbes on coral reefs within the Great Barrier Reef, Australia","volume":"14","author":"Ayukai","year":"1995","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR4","doi-asserted-by":"publisher","first-page":"257","DOI":"10.3354\/meps010257","article-title":"The ecological role of water-column microbes in the sea","volume":"10","author":"Azam","year":"1983","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR5","doi-asserted-by":"crossref","first-page":"e8043","DOI":"10.1371\/journal.pone.0008043","article-title":"Hyperspectral and physiological analyses of coral-algal interactions","volume":"4","author":"Barott","year":"2009","journal-title":"PLoS One"},{"key":"2024020218224959400_CR6","doi-asserted-by":"crossref","first-page":"5642","DOI":"10.1128\/AEM.00461-07","article-title":"Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals","volume":"73","author":"Beman","year":"2007","journal-title":"Appl Environ Microbiol"},{"key":"2024020218224959400_CR7","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1016\/B978-012323841-2\/50006-3","volume-title":"Biogeochemistry of Marine Dissolved Organic Matter","author":"Carlson","year":"2002"},{"key":"2024020218224959400_CR8","doi-asserted-by":"crossref","first-page":"69","DOI":"10.3354\/ame010069","article-title":"Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea","volume":"10","author":"Carlson","year":"1996","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR9","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.4319\/lo.2004.49.4.1073","article-title":"Interactions among dissolved organic carbon, microbial processes, and community structure in the mesopelagic zone of the northwestern Sargasso Sea","volume":"49","author":"Carlson","year":"2004","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR10","doi-asserted-by":"crossref","first-page":"1433","DOI":"10.1016\/j.dsr2.2010.02.013","article-title":"Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin","volume":"57","author":"Carlson","year":"2010","journal-title":"Deep Sea Res Part II: Topical Stud Oceanogr"},{"key":"2024020218224959400_CR11","doi-asserted-by":"crossref","first-page":"267","DOI":"10.3354\/meps139267","article-title":"Utilization and turnover of labile dissolved organic matter by bacterial heterotrophs in eastern North Pacific surface waters","volume":"139","author":"Cherrier","year":"1996","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR12","doi-asserted-by":"crossref","first-page":"253","DOI":"10.3354\/meps063253","article-title":"Biogeochemical significance of bacterial biomass in the ocean's euphotic zone","volume":"63","author":"Cho","year":"1990","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR13"},{"key":"2024020218224959400_CR14","doi-asserted-by":"crossref","first-page":"168","DOI":"10.4319\/lo.2003.48.1.0168","article-title":"Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary","volume":"48","author":"Cottrell","year":"2003","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR15","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1071\/MF9830835","article-title":"Dissolved nutrients and organic particulates in water flowing over coral reefs at Lizard Island","volume":"34","author":"Crossland","year":"1983","journal-title":"Mar Freshwater Res"},{"key":"2024020218224959400_CR16","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1007\/BF00571824","article-title":"Role of coral reefs in global ocean production","volume":"10","author":"Crossland","year":"1991","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR17","volume-title":"The Structure and Distribution of Coral Reefs","author":"Darwin","year":"1889"},{"key":"2024020218224959400_CR18","doi-asserted-by":"crossref","first-page":"139","DOI":"10.3354\/meps07403","article-title":"Major bulk dissolved organic carbon (DOC) removal by encrusting coral reef cavity sponges","volume":"357","author":"de Goeij","year":"2008","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR19","doi-asserted-by":"crossref","first-page":"2608","DOI":"10.4319\/lo.2007.52.6.2608","article-title":"Coral cavities are sinks of dissolved organic carbon (DOC)","volume":"52","author":"de Goeij","year":"2007","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR20","doi-asserted-by":"crossref","first-page":"939","DOI":"10.1016\/0278-4343(92)90053-M","article-title":"Residence time of water and phytoplankton biomass in coral reef lagoons","volume":"12","author":"Delesalle","year":"1992","journal-title":"Continental Shelf Res"},{"key":"2024020218224959400_CR21","doi-asserted-by":"crossref","first-page":"W394","DOI":"10.1093\/nar\/gkl244","article-title":"NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes","volume":"34","author":"DeSantis","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"2024020218224959400_CR22","doi-asserted-by":"crossref","first-page":"5069","DOI":"10.1128\/AEM.03006-05","article-title":"Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB","volume":"72","author":"DeSantis","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"2024020218224959400_CR23","doi-asserted-by":"crossref","first-page":"W465","DOI":"10.1093\/nar\/gkn180","article-title":"Phylogeny. fr: robust phylogenetic analysis for the non-specialist","volume":"36","author":"Dereeper","year":"2008","journal-title":"Nucleic Acids Res"},{"key":"2024020218224959400_CR24","doi-asserted-by":"crossref","first-page":"1584","DOI":"10.1371\/journal.pone.0001584","article-title":"Microbial ecology of four coral atolls in the northern line islands","volume":"3","author":"Dinsdale","year":"2008","journal-title":"PLoS One"},{"key":"2024020218224959400_CR25","first-page":"265","article-title":"The biomass, production and fate of bacteria in coral reefs","volume":"25","author":"Ducklow","year":"1990","journal-title":"Ecosyst World"},{"key":"2024020218224959400_CR26","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1016\/j.marpolbul.2004.11.028","article-title":"Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis","volume":"50","author":"Fabricius","year":"2005","journal-title":"Mar Pollut Bull"},{"key":"2024020218224959400_CR27","doi-asserted-by":"crossref","first-page":"265","DOI":"10.3354\/meps172265","article-title":"Release of dissolved organic carbon and nitrogen by the zooxanthellate coral Galaxea fascicularis","volume":"172","author":"Ferrier-Pages","year":"1998","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR28","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1007\/BF01160045","article-title":"Dissolved carbon in pore waters from the carbonate barrier reef of Tahiti (French Polynesia) and its basalt basement","volume":"2","author":"Fichez","year":"1996","journal-title":"Aquat Geochem"},{"key":"2024020218224959400_CR29","first-page":"523","article-title":"Bacteria, flagellates and nutrients in island fringing coral reef waters: influence of the ocean, the reef and eutrophication","volume":"65","author":"Gast","year":"1999","journal-title":"Bull Mar Sci"},{"key":"2024020218224959400_CR30","doi-asserted-by":"crossref","first-page":"37","DOI":"10.3354\/meps167037","article-title":"Bacteria in coral reef water types: removal of cells, stimulation of growth and mineralization","volume":"167","author":"Gast","year":"1998","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR31","doi-asserted-by":"crossref","first-page":"13017","DOI":"10.1073\/pnas.96.23.13017","article-title":"Measurement of community metabolism and significance in the coral reef CO2 source-sink debate","volume":"96","author":"Gattuso","year":"1999","journal-title":"Proc Natl Acad Sci USA"},{"key":"2024020218224959400_CR32","doi-asserted-by":"crossref","first-page":"109","DOI":"10.3354\/meps145109","article-title":"Carbon fluxes in coral reefs. I. Lagrangian measurement of community metabolism and resulting air-sea CO 2 disequilibrium","volume":"145","author":"Gattuso","year":"1996","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR33","doi-asserted-by":"crossref","first-page":"938","DOI":"10.4319\/lo.2009.54.3.0938","article-title":"Intense benthic grazing of phytoplankton in a coral reef","volume":"54","author":"Genin","year":"2009","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR34","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1038\/nature04158","article-title":"Molecular diversity and ecology of microbial plankton","volume":"437","author":"Giovannoni","year":"2005","journal-title":"Nature"},{"key":"2024020218224959400_CR35","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1007\/BF00306137","article-title":"Model of a coral reef ecosystem","volume":"3","author":"Grigg","year":"1984","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR36","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood","volume":"52","author":"Guindon","year":"2003","journal-title":"Syst Biol"},{"key":"2024020218224959400_CR37","doi-asserted-by":"crossref","first-page":"318","DOI":"10.1029\/2005EO350003","article-title":"Dissolved organic carbon reference material program","volume":"86","author":"Hansell","year":"2005","journal-title":"Eos Trans"},{"key":"2024020218224959400_CR38","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1029\/98GB01928","article-title":"Net community production of dissolved organic carbon","volume":"12","author":"Hansell","year":"1998","journal-title":"Global Biogeochem Cycles"},{"key":"2024020218224959400_CR39","doi-asserted-by":"crossref","first-page":"129","DOI":"10.3354\/meps232129","article-title":"Organic carbon flux in Shiraho coral reef (Ishigaki Island, Japan)","volume":"232","author":"Hata","year":"2002","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR40","first-page":"317","volume-title":"Proceedings of the Inaugural Great Barrier Reef Conference","author":"Hatcher","year":"1983"},{"key":"2024020218224959400_CR41","doi-asserted-by":"crossref","first-page":"2681","DOI":"10.4319\/lo.2008.53.6.2681","article-title":"Episodic circulation and exchange in a wave-driven coral reef and lagoon system","volume":"53","author":"Hench","year":"2008","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR42","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1046\/j.1365-3091.2001.00356.x","article-title":"Microbially induced cementation of carbonate sands: are micritic meniscus cements good indicators of vadose diagenesis?","volume":"48","author":"Hillg\u00e4rtner","year":"2001","journal-title":"Sedimentology"},{"key":"2024020218224959400_CR43","doi-asserted-by":"crossref","first-page":"59","DOI":"10.3354\/ame044059","article-title":"Picoplankton removal by the coral reef community of La Pr\u00e9voyante, Mayotte Island","volume":"44","author":"Houlbreque","year":"2006","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR44","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1126\/science.1146689","article-title":"Microbial population structures in the deep marine biosphere","volume":"318","author":"Huber","year":"2007","journal-title":"Science"},{"key":"2024020218224959400_CR45","first-page":"156","volume-title":"Hydrodynamique Des Lagons d\u2032Atoll et d\u2032\u00eele Haute en Polyn\u00e9sie Fran\u00e7aise","author":"Lenhardt","year":"1991"},{"key":"2024020218224959400_CR46","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1126\/science.1099128","article-title":"Discovery of symbiotic nitrogen-fixing cyanobacteria in corals","volume":"305","author":"Lesser","year":"2004","journal-title":"Science"},{"key":"2024020218224959400_CR47","doi-asserted-by":"crossref","first-page":"457","DOI":"10.1007\/BF00392505","article-title":"Significance of pelagic bacteria as a trophic resource in a coral reef lagoon, One Tree Island, Great Barrier Reef","volume":"92","author":"Linley","year":"1986","journal-title":"Mar Biol"},{"key":"2024020218224959400_CR48","doi-asserted-by":"crossref","first-page":"808","DOI":"10.4319\/lo.2007.52.2.0808","article-title":"Water residence time: a regulatory factor of the DOM to POM transfer efficiency","volume":"52","author":"Mari","year":"2007","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR49","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1007\/BF00393249","article-title":"Temporal and spatial variation in bacterial production in the water column over a coral reef","volume":"85","author":"Moriarty","year":"1985","journal-title":"Mar Biol"},{"key":"2024020218224959400_CR50","doi-asserted-by":"crossref","first-page":"1687","DOI":"10.4319\/lo.2005.50.5.1687","article-title":"Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site","volume":"50","author":"Morris","year":"2005","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR51","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1007\/s10452-008-9210-y","article-title":"In situ release of coral mucus by Acropora and its influence on the heterotrophic bacteria","volume":"43","author":"Nakajima","year":"2009","journal-title":"Aquat Ecol"},{"key":"2024020218224959400_CR52","doi-asserted-by":"crossref","first-page":"3293","DOI":"10.1098\/rstb.2008.0119","article-title":"The age and origin of the Pacific islands: a geological overview","volume":"363","author":"Neall","year":"2008","journal-title":"Philos Transact Royal Soc B: Biolog Sci"},{"key":"2024020218224959400_CR53","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1038\/ismej.2008.81","article-title":"Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities","volume":"3","author":"Nelson","year":"2009","journal-title":"ISME J"},{"key":"2024020218224959400_CR54","doi-asserted-by":"crossref","first-page":"291","DOI":"10.2307\/1943285","article-title":"Trophic structure and productivity of a windward coral reef community on Eniwetok Atoll","volume":"25","author":"Odum","year":"1955","journal-title":"Ecol Monogr"},{"key":"2024020218224959400_CR55","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1007\/s00338-001-0192-7","article-title":"A reconnaissance approach for hydrology of atoll lagoons","volume":"20","author":"Pag\u00e8s","year":"2001","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR56","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/S0990-7440(01)01113-5","article-title":"Hydrology and trophic state in Takapoto Atoll lagoon: comparison with other Tuamotu lagoons","volume":"14","author":"Pag\u00e8s","year":"2001","journal-title":"Aquating Living Resources"},{"key":"2024020218224959400_CR57","doi-asserted-by":"crossref","first-page":"185","DOI":"10.3354\/meps113185","article-title":"Distribution, size and bacterial colonization of transparent exopolymer particles (TEP) in the ocean","volume":"113","author":"Passow","year":"1994","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR58","doi-asserted-by":"crossref","first-page":"499","DOI":"10.2307\/1296885","article-title":"The ocean's food web, a changing paradigm","volume":"24","author":"Pomeroy","year":"1974","journal-title":"Bioscience"},{"key":"2024020218224959400_CR59","doi-asserted-by":"crossref","first-page":"943","DOI":"10.4319\/lo.1980.25.5.0943","article-title":"The use of DAPI for identifying and counting aquatic microflora","volume":"25","author":"Porter","year":"1980","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR60","doi-asserted-by":"crossref","first-page":"90","DOI":"10.5670\/oceanog.2002.25","article-title":"Reefs revealed using the control volume approach","volume":"15","author":"Reidenbach","year":"2002","journal-title":"Oceanography"},{"key":"2024020218224959400_CR61","doi-asserted-by":"crossref","first-page":"726","DOI":"10.1038\/35099547","article-title":"Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges","volume":"413","author":"Richter","year":"2001","journal-title":"Nature"},{"key":"2024020218224959400_CR62","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1007\/s003380100138","article-title":"Diversity of bacteria associated with the Caribbean coral Montastraea franksi","volume":"20","author":"Rohwer","year":"2001","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR63","doi-asserted-by":"crossref","first-page":"785","DOI":"10.1016\/0278-4343(92)90044-K","article-title":"Geothermal endo-upwelling: a solution to the reef nutrient paradox?","volume":"12","author":"Rougerie","year":"1992","journal-title":"Continental Shelf Res"},{"key":"2024020218224959400_CR64","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1093\/plankt\/24.4.301","article-title":"Carbon budget of the planktonic food web in an atoll lagoon (Takapoto, French Polynesia)","volume":"24","author":"Sakka","year":"2002","journal-title":"J Plankton Res"},{"key":"2024020218224959400_CR65"},{"key":"2024020218224959400_CR66","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1007\/s00338-004-0400-3","article-title":"Removal of bacteria and nutrient dynamics within the coral reef framework of Cura\u00e7ao (Netherlands Antilles)","volume":"23","author":"Scheffers","year":"2004","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR67"},{"key":"2024020218224959400_CR68","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3354\/meps288001","article-title":"Spatial dynamics of virus-like particles and heterotrophic bacteria within a shallow coral reef system","volume":"288","author":"Seymour","year":"2005","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR69","doi-asserted-by":"crossref","first-page":"21","DOI":"10.3354\/meps300021","article-title":"Microscale and small-scale temporal dynamics of a coastal planktonic microbial community","volume":"300","author":"Seymour","year":"2005","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR70","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1111\/j.1461-0248.2006.00937.x","article-title":"Indirect effects of algae on coral: algae mediated, microbe induced coral mortality","volume":"9","author":"Smith","year":"2006","journal-title":"Ecol Lett"},{"key":"2024020218224959400_CR71","doi-asserted-by":"crossref","first-page":"380","DOI":"10.4319\/lo.1973.18.3.0380","article-title":"On the feeding of some scleractinian corals with bacteria and dissolved organic matter","volume":"18","author":"Sorokin","year":"1973","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR72","first-page":"401","article-title":"Aspects of trophic relations, productivity and energy balance in coral-reef ecosystems","volume":"25","author":"Sorokin","year":"1990","journal-title":"Ecosyst world."},{"key":"2024020218224959400_CR73","doi-asserted-by":"crossref","first-page":"986","DOI":"10.4319\/lo.2008.53.3.0986","article-title":"In situ fluxes of dissolved inorganic nitrogen from the sponge community on Conch Reef, Key Largo, Florida","volume":"53","author":"Southwell","year":"2008","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR74","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/0016-7037(70)90003-7","article-title":"Interaction of organic compounds with calcium carbonate--I","volume":"34","author":"Suess","year":"1970","journal-title":"Assoc Phenomena Geochem Implications. Geochimica et Cosmochimica Acta"},{"key":"2024020218224959400_CR75","doi-asserted-by":"crossref","first-page":"428","DOI":"10.3402\/tellusb.v55i2.16761","article-title":"Carbon budget of coral reef systems: an overview of observations in fringing reefs, barrier reefs and atolls in the Indo-Pacific regions","volume":"55","author":"Suzuki","year":"2003","journal-title":"Tellus"},{"key":"2024020218224959400_CR76"},{"key":"2024020218224959400_CR77","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1007\/s003380050152","article-title":"Biomass, production and heterotrophic activity of bacterioplankton in the Great Astrolabe Reef lagoon (Fiji)","volume":"18","author":"Torr\u00e9ton","year":"1999","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR78","doi-asserted-by":"crossref","first-page":"251","DOI":"10.3354\/ame011251","article-title":"Temporal and spatial stability of bacterioplankton biomass and productivity in an atoll lagoon","volume":"11","author":"Torr\u00e9ton","year":"1996","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR79","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1007\/BF00185887","article-title":"Bacterioplankton production determined by DNA synthesis, protein synthesis, and frequency of dividing cells in Tuamotu atoll lagoons and surrounding ocean","volume":"32","author":"Torr\u00e9ton","year":"1996","journal-title":"Microb Ecol"},{"key":"2024020218224959400_CR80","first-page":"947","volume-title":"Proceedings of the 8th International Coral Reef Symposium","author":"Torr\u00e9ton","year":"1997"},{"key":"2024020218224959400_CR81","doi-asserted-by":"crossref","first-page":"267","DOI":"10.3354\/ame028267","article-title":"Relationships between bacterioplankton and phytoplankton biomass, production and turnover rate in Tuamotu atoll lagoons","volume":"28","author":"Torr\u00e9ton","year":"2002","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR82","doi-asserted-by":"crossref","first-page":"766","DOI":"10.1016\/j.ecss.2007.05.018","article-title":"Correspondence between the distribution of hydrodynamic time parameters and the distribution of biological and chemical variables in a semi-enclosed coral reef lagoon","volume":"74","author":"Torr\u00e9ton","year":"2007","journal-title":"Estuarine Coastal Shelf Sci"},{"key":"2024020218224959400_CR83","doi-asserted-by":"crossref","first-page":"17","DOI":"10.3354\/ame024017","article-title":"Linkage of small-scale spatial variations in DOC, inorganic nutrients and bacterioplankton growth with different coral reef water types","volume":"24","author":"Van Duyl","year":"2001","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR84","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1007\/s00338-005-0066-5","article-title":"The effect of water exchange on bacterioplankton depletion and inorganic nutrient dynamics in coral reef cavities","volume":"25","author":"Van Duyl","year":"2006","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR85","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/j.marchem.2004.06.017","article-title":"The oceanic gel phase: a bridge in the DOM-POM continuum","volume":"92","author":"Verdugo","year":"2004","journal-title":"Mar Chem"},{"key":"2024020218224959400_CR86","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1007\/BF00255465","article-title":"Coral reefs: sources or sinks of atmospheric CO2?","volume":"11","author":"Ware","year":"1992","journal-title":"Coral Reefs"},{"key":"2024020218224959400_CR87","doi-asserted-by":"crossref","first-page":"2707","DOI":"10.1111\/j.1462-2920.2007.01383.x","article-title":"Metagenomic analysis of the microbial community associated with the coral Porites astreoides","volume":"9","author":"Wegley","year":"2007","journal-title":"Environ Microbiol"},{"key":"2024020218224959400_CR88","doi-asserted-by":"crossref","first-page":"15","DOI":"10.3354\/ame01411","article-title":"Bacterial community composition and potential controlling mechanisms along a trophic gradient in a barrier reef system","volume":"60","author":"Weinbauer","year":"2010","journal-title":"Aquat Microb Ecol"},{"key":"2024020218224959400_CR89","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1126\/science.188.4185.257","article-title":"Nitrogen fixation in a coral reef community","volume":"188","author":"Wiebe","year":"1975","journal-title":"Science"},{"key":"2024020218224959400_CR90","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1071\/MF05205","article-title":"Detection and enumeration of microbial cells within highly porous calcareous reef sands","volume":"57","author":"Wild","year":"2006","journal-title":"Mar Freshwater Res"},{"key":"2024020218224959400_CR91","doi-asserted-by":"crossref","first-page":"159","DOI":"10.3354\/meps267159","article-title":"Degradation and mineralization of coral mucus in reef environments","volume":"267","author":"Wild","year":"2004","journal-title":"Mar Ecol Prog Ser"},{"key":"2024020218224959400_CR92","doi-asserted-by":"crossref","first-page":"141","DOI":"10.4319\/lo.2003.48.1.0141","article-title":"In situ feeding and element removal in the symbiont-bearing sponge Theonella swinhoei: bulk DOC is the major source for carbon","volume":"48","author":"Yahel","year":"2003","journal-title":"Limnol Oceanogr"},{"key":"2024020218224959400_CR93","doi-asserted-by":"crossref","first-page":"167","DOI":"10.3354\/meps076167","article-title":"Comparison of DNA and protein synthesis rates of bacterial assemblages between coral reef waters and pelagic waters in tropical ocean","volume":"76","author":"Yoshinaga","year":"1991","journal-title":"Mar Ecol Prog Ser"}],"container-title":["The ISME Journal"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/www.nature.com\/articles\/ismej201112.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/www.nature.com\/articles\/ismej201112","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/academic.oup.com\/ismej\/article-pdf\/5\/8\/1374\/56548390\/41396_2011_article_bfismej201112.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"http:\/\/www.nature.com\/articles\/ismej201112.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/academic.oup.com\/ismej\/article-pdf\/5\/8\/1374\/56548390\/41396_2011_article_bfismej201112.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,2]],"date-time":"2024-02-02T13:33:54Z","timestamp":1706880834000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/ismej\/article\/5\/8\/1374\/7587966"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,3,10]]},"references-count":93,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2011,8,1]]}},"URL":"https:\/\/doi.org\/10.1038\/ismej.2011.12","relation":{"documents":[{"id-type":"doi","id":"10.1575\/1912\/bco-dmo.3670.2","asserted-by":"object"}],"has-review":[{"id-type":"doi","id":"10.3410\/f.13271996.14633054","asserted-by":"object"}]},"ISSN":["1751-7362","1751-7370"],"issn-type":[{"value":"1751-7362","type":"print"},{"value":"1751-7370","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2011,8]]},"published":{"date-parts":[[2011,3,10]]}}}