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Extensive biological diversity is reflected in substantial ecological and genetic variability within and among\n                    <jats:italic>Trichinella<\/jats:italic>\n                    taxa, and major controversy surrounds the systematics of this complex. Here we report the sequencing and assembly of 16 draft genomes representing all 12 recognized\n                    <jats:italic>Trichinella<\/jats:italic>\n                    species and genotypes, define protein-coding gene sets and assess genetic differences among these taxa. Using thousands of shared single-copy orthologous gene sequences, we fully reconstruct, for the first time, a phylogeny and biogeography for the\n                    <jats:italic>Trichinella<\/jats:italic>\n                    complex, and show that encapsulated and non-encapsulated\n                    <jats:italic>Trichinella<\/jats:italic>\n                    taxa diverged from their most recent common ancestor \u223c21 million years ago (mya), with taxon diversifications commencing \u223c10\u22127\u2009mya.\n                  <\/jats:p>","DOI":"10.1038\/ncomms10513","type":"journal-article","created":{"date-parts":[[2016,2,1]],"date-time":"2016-02-01T04:40:59Z","timestamp":1454301659000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":137,"title":["Phylogenomic and biogeographic reconstruction of the Trichinella complex"],"prefix":"10.1038","volume":"7","author":[{"given":"Pasi K.","family":"Korhonen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edoardo","family":"Pozio","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Giuseppe","family":"La Rosa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bill C. 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