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Chromatin complex compositions change during cellular differentiation and ageing, and are expected to be highly heterogeneous among terminally differentiated single cells\n                    <jats:sup>4\u20137<\/jats:sup>\n                    . Here we introduce the multinucleic acid interaction mapping in single cells (MUSIC) technique for concurrent profiling of multiplex chromatin interactions, gene expression and RNA\u2013chromatin associations within individual nuclei. When applied to 14\u2009human frontal cortex samples from\u00a0older donors, MUSIC delineated diverse cortical cell types and states. We observed that nuclei exhibiting fewer short-range chromatin interactions were correlated with both an \u2018older\u2019 transcriptomic signature and Alzheimer\u2019s disease pathology. Furthermore, the cell type exhibiting chromatin contacts between\n                    <jats:italic>cis<\/jats:italic>\n                    expression quantitative trait loci and a promoter tends to be that in which these\n                    <jats:italic>cis<\/jats:italic>\n                    expression quantitative trait loci specifically affect the expression of their target gene. In addition, female cortical cells exhibit highly heterogeneous interactions between XIST non-coding RNA and chromosome\u2009X, along with diverse spatial organizations of the X\u2009chromosomes. MUSIC presents a potent tool for exploration of chromatin architecture and transcription at cellular resolution in complex tissues.\n                  <\/jats:p>","DOI":"10.1038\/s41586-024-07239-w","type":"journal-article","created":{"date-parts":[[2024,3,27]],"date-time":"2024-03-27T13:03:24Z","timestamp":1711544604000},"page":"648-656","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":66,"title":["Single-cell multiplex chromatin and RNA interactions in ageing human brain"],"prefix":"10.1038","volume":"628","author":[{"given":"Xingzhao","family":"Wen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhifei","family":"Luo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenxin","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Riccardo","family":"Calandrelli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tri C.","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xueyi","family":"Wan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John Lalith","family":"Charles Richard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6419-7453","authenticated-orcid":false,"given":"Sheng","family":"Zhong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,3,27]]},"reference":[{"key":"7239_CR1","doi-asserted-by":"publisher","first-page":"5775","DOI":"10.1016\/j.cell.2021.10.014","volume":"184","author":"SA Quinodoz","year":"2021","unstructured":"Quinodoz, S. 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