{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T05:34:45Z","timestamp":1790141685019,"version":"4.0.1"},"reference-count":60,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,5,6]],"date-time":"2024-05-06T00:00:00Z","timestamp":1714953600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2024,5,6]],"date-time":"2024-05-06T00:00:00Z","timestamp":1714953600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100008862","name":"China National Tobacco Corporation","doi-asserted-by":"publisher","award":["No. 110202201004 (JY-04)"],"award-info":[{"award-number":["No. 110202201004 (JY-04)"]}],"id":[{"id":"10.13039\/501100008862","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Sci Data"],"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Oriental tobacco budworm (<jats:italic>Helicoverpa assulta<\/jats:italic>) and cotton bollworm (<jats:italic>Helicoverpa armigera<\/jats:italic>) are two closely related species within the genus Helicoverpa. They have similar appearances and consistent damage patterns, often leading to confusion. However, the cotton bollworm is a typical polyphagous insect, while the oriental tobacco budworm belongs to the oligophagous insects. In this study, we used Nanopore, PacBio, and Illumina platforms to sequence the genome of <jats:italic>H. assulta<\/jats:italic> and used Hifiasm to create a haplotype-resolved draft genome. The Hi-C technique helped anchor 33 primary contigs to 32 chromosomes, including two sex chromosomes, Z and W. The final primary haploid genome assembly was approximately 415.19\u2009Mb in length. BUSCO analysis revealed a high degree of completeness, with 99.0% gene coverage in this genome assembly. The repeat sequences constituted 38.39% of the genome assembly, and we annotated 17093 protein-coding genes. The high-quality genome assembly of the oriental tobacco budworm serves as a valuable genetic resource that enhances our comprehension of how they select hosts in a complex odour environment. It will also aid in developing an effective control policy.<\/jats:p>","DOI":"10.1038\/s41597-024-03264-6","type":"journal-article","created":{"date-parts":[[2024,5,6]],"date-time":"2024-05-06T14:02:03Z","timestamp":1715004123000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["A chromosome-level haplotype-resolved genome assembly of oriental tobacco budworm (Helicoverpa assulta)"],"prefix":"10.1038","volume":"11","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9562-6158","authenticated-orcid":false,"given":"Yalong","family":"Xu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chen","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zefeng","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xueao","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhengzhong","family":"Kang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peng","family":"Lu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jianfeng","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9991-423X","authenticated-orcid":false,"given":"Peijian","family":"Cao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiansi","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4506-3238","authenticated-orcid":false,"given":"Xiaoguang","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,5,6]]},"reference":[{"key":"3264_CR1","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1146\/annurev.en.34.010189.000313","volume":"34","author":"GP Fitt","year":"1989","unstructured":"Fitt, G. P. The Ecology of Heliothis Species in Relation to Agroecosystems. Annu. Rev. Entomol 34, 17\u201353 (1989).","journal-title":"Annu. Rev. Entomol"},{"key":"3264_CR2","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1111\/j.1744-7917.2011.01413.x","volume":"18","author":"JCY-CWXCY-JJD-X Zhang","year":"2011","unstructured":"Zhang, J. C. Y.-C. W. X. C. Y.-J. J. D.-X. A simple and reliable method for discriminating between Helicoverpa armigera and Helicoverpa assulta (Lepidoptera: Noctuidae). Insect Science 18, 629\u2013634 (2011).","journal-title":"Insect Science"},{"key":"3264_CR3","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-582","volume":"14","author":"H Li","year":"2013","unstructured":"Li, H., Zhang, H., Guan, R. & Miao, X. Identification of differential expression genes associated with host selection and adaptation between two sibling insect species by transcriptional profile analysis. BMC Genomics 14, 582 (2013).","journal-title":"BMC Genomics"},{"key":"3264_CR4","doi-asserted-by":"publisher","first-page":"1037","DOI":"10.1007\/s00359-006-0141-6","volume":"192","author":"XC Zhao","year":"2006","unstructured":"Zhao, X. C., Yan, Y. H. & Wang, C. Z. Behavioral and electrophysiological responses of Helicoverpa assulta, H. armigera (Lepidoptera: Noctuidae), their F1 hybrids and backcross progenies to sex pheromone component blends. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 192, 1037\u201347 (2006).","journal-title":"J Comp Physiol A Neuroethol Sens Neural Behav Physiol"},{"key":"3264_CR5","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1146\/annurev.ento.50.071803.130349","volume":"50","author":"KM Wu","year":"2005","unstructured":"Wu, K. M. & Guo, Y. Y. The evolution of cotton pest management practices in China. Annu Rev Entomol 50, 31\u201352 (2005).","journal-title":"Annu Rev Entomol"},{"key":"3264_CR6","doi-asserted-by":"publisher","first-page":"1212","DOI":"10.1016\/j.jinsphys.2011.05.015","volume":"57","author":"SJ Ahn","year":"2011","unstructured":"Ahn, S. J., Badenes-Perez, F. R. & Heckel, D. G. A host-plant specialist, Helicoverpa assulta, is more tolerant to capsaicin from Capsicum annuum than other noctuid species. J Insect Physiol 57, 1212\u20139 (2011).","journal-title":"J Insect Physiol"},{"key":"3264_CR7","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1079\/BER2005372","volume":"95","author":"XC Zhao","year":"2005","unstructured":"Zhao, X. C. et al. Hybridization between Helicoverpa armigera and Helicoverpa assulta (Lepidoptera: Noctuidae): development and morphological characterization of F1 hybrids. Bull Entomol Res 95, 409\u201316 (2005).","journal-title":"Bull Entomol Res"},{"key":"3264_CR8","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1038\/s41592-020-01056-5","volume":"18","author":"H Cheng","year":"2021","unstructured":"Cheng, H., Concepcion, G. T., Feng, X., Zhang, H. & Li, H. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nat Methods 18, 170\u2013175 (2021).","journal-title":"Nat Methods"},{"key":"3264_CR9","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","volume":"34","author":"S Chen","year":"2018","unstructured":"Chen, S., Zhou, Y., Chen, Y. & Gu, J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34, i884\u2013i890 (2018).","journal-title":"Bioinformatics"},{"key":"3264_CR10","doi-asserted-by":"publisher","first-page":"1854","DOI":"10.1101\/gr.175034.114","volume":"24","author":"NH Dryden","year":"2014","unstructured":"Dryden, N. H. et al. Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C. Genome Res 24, 1854\u201368 (2014).","journal-title":"Genome Res"},{"key":"3264_CR11","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-03626-9","volume":"11","author":"VN Sherathiya","year":"2021","unstructured":"Sherathiya, V. N., Schaid, M. D., Seiler, J. L., Lopez, G. C. & Lerner, T. N. GuPPy, a Python toolbox for the analysis of fiber photometry data. Sci Rep 11, 24212 (2021).","journal-title":"Sci Rep"},{"key":"3264_CR12","doi-asserted-by":"publisher","first-page":"2666","DOI":"10.1093\/bioinformatics\/bty149","volume":"34","author":"W De Coster","year":"2018","unstructured":"De Coster, W., D\u2019Hert, S., Schultz, D. T., Cruts, M. & Van Broeckhoven, C. NanoPack: visualizing and processing long-read sequencing data. Bioinformatics 34, 2666\u20132669 (2018).","journal-title":"Bioinformatics"},{"key":"3264_CR13","doi-asserted-by":"publisher","first-page":"764","DOI":"10.1093\/bioinformatics\/btr011","volume":"27","author":"G Marcais","year":"2011","unstructured":"Marcais, G. & Kingsford, C. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics 27, 764\u201370 (2011).","journal-title":"Bioinformatics"},{"key":"3264_CR14","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-14998-3","volume":"11","author":"TR Ranallo-Benavidez","year":"2020","unstructured":"Ranallo-Benavidez, T. R., Jaron, K. S. & Schatz, M. C. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. Nat Commun 11, 1432 (2020).","journal-title":"Nat Commun"},{"key":"3264_CR15","doi-asserted-by":"publisher","first-page":"2253","DOI":"10.1093\/bioinformatics\/btz891","volume":"36","author":"J Hu","year":"2020","unstructured":"Hu, J., Fan, J., Sun, Z. & Liu, S. NextPolish: a fast and efficient genome polishing tool for long-read assembly. Bioinformatics 36, 2253\u20132255 (2020).","journal-title":"Bioinformatics"},{"key":"3264_CR16","doi-asserted-by":"publisher","first-page":"1069","DOI":"10.1093\/gbe\/evu082","volume":"6","author":"LP Pryszcz","year":"2014","unstructured":"Pryszcz, L. P., Nemeth, T., Gacser, A. & Gabaldon, T. Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies. Genome Biol Evol 6, 1069\u201378 (2014).","journal-title":"Genome Biol Evol"},{"key":"3264_CR17","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2485-7","volume":"19","author":"MJ Roach","year":"2018","unstructured":"Roach, M. J., Schmidt, S. A. & Borneman, A. R. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies. BMC Bioinformatics 19, 460 (2018).","journal-title":"BMC Bioinformatics"},{"key":"3264_CR18","doi-asserted-by":"publisher","first-page":"e323","DOI":"10.1002\/cpz1.323","volume":"1","author":"M Manni","year":"2021","unstructured":"Manni, M., Berkeley, M. R., Seppey, M. & Zdobnov, E. M. BUSCO: Assessing Genomic Data Quality and Beyond. Curr Protoc 1, e323 (2021).","journal-title":"Curr Protoc"},{"key":"3264_CR19","doi-asserted-by":"publisher","DOI":"10.1186\/s13040-014-0034-0","volume":"8","author":"WB Langdon","year":"2015","unstructured":"Langdon, W. B. Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks. BioData Min 8, 1 (2015).","journal-title":"BioData Min"},{"issue":"Suppl 1","key":"3264_CR20","first-page":"S1791","volume":"26","author":"H Jo","year":"2015","unstructured":"Jo, H. & Koh, G. Faster single-end alignment generation utilizing multi-thread for BWA. Biomed Mater Eng 26(Suppl 1), S1791\u20136 (2015).","journal-title":"Biomed Mater Eng"},{"key":"3264_CR21","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","author":"H Li","year":"2009","unstructured":"Li, H. et al. The Sequence Alignment\/Map format and SAMtools. Bioinformatics 25, 2078\u20139 (2009).","journal-title":"Bioinformatics"},{"key":"3264_CR22","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1126\/science.aal3327","volume":"356","author":"O Dudchenko","year":"2017","unstructured":"Dudchenko, O. et al. De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science 356, 92\u201395 (2017).","journal-title":"Science"},{"key":"3264_CR23","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1016\/j.cels.2015.07.012","volume":"3","author":"NC Durand","year":"2016","unstructured":"Durand, N. C. et al. Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Syst 3, 99\u2013101 (2016).","journal-title":"Cell Syst"},{"key":"3264_CR24","doi-asserted-by":"publisher","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","volume":"37","author":"D Kim","year":"2019","unstructured":"Kim, D., Paggi, J. M., Park, C., Bennett, C. & Salzberg, S. L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907\u2013915 (2019).","journal-title":"Nat Biotechnol"},{"key":"3264_CR25","doi-asserted-by":"publisher","first-page":"e1009730","DOI":"10.1371\/journal.pcbi.1009730","volume":"18","author":"A Shumate","year":"2022","unstructured":"Shumate, A., Wong, B., Pertea, G. & Pertea, M. Improved transcriptome assembly using a hybrid of long and short reads with StringTie. PLoS Comput Biol 18, e1009730 (2022).","journal-title":"PLoS Comput Biol"},{"key":"3264_CR26","doi-asserted-by":"publisher","first-page":"68","DOI":"10.1038\/nmeth.4078","volume":"14","author":"YS Niknafs","year":"2017","unstructured":"Niknafs, Y. S., Pandian, B., Iyer, H. K., Chinnaiyan, A. M. & Iyer, M. K. TACO produces robust multisample transcriptome assemblies from RNA-seq. Nat Methods 14, 68\u201370 (2017).","journal-title":"Nat Methods"},{"key":"3264_CR27","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1905-y","volume":"20","author":"S Ou","year":"2019","unstructured":"Ou, S. et al. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biol 20, 275 (2019).","journal-title":"Genome Biol"},{"key":"3264_CR28","first-page":"4 10 1","volume":"Chapter 4","author":"M Tarailo-Graovac","year":"2009","unstructured":"Tarailo-Graovac, M. & Chen, N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics Chapter 4, 4 10 1\u20134 10 14 (2009).","journal-title":"Curr Protoc Bioinformatics"},{"key":"3264_CR29","doi-asserted-by":"publisher","DOI":"10.1186\/s13100-020-00230-y","volume":"12","author":"J Storer","year":"2021","unstructured":"Storer, J., Hubley, R., Rosen, J., Wheeler, T. J. & Smit, A. F. The Dfam community resource of transposable element families, sequence models, and genome annotations. Mob DNA 12, 2 (2021).","journal-title":"Mob DNA"},{"key":"3264_CR30","doi-asserted-by":"publisher","first-page":"lqaa108","DOI":"10.1093\/nargab\/lqaa108","volume":"3","author":"T Bruna","year":"2021","unstructured":"Bruna, T., Hoff, K. J., Lomsadze, A., Stanke, M. & Borodovsky, M. BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database. NAR Genom Bioinform 3, lqaa108 (2021).","journal-title":"NAR Genom Bioinform"},{"key":"3264_CR31","doi-asserted-by":"publisher","first-page":"D389","DOI":"10.1093\/nar\/gkaa1009","volume":"49","author":"EM Zdobnov","year":"2021","unstructured":"Zdobnov, E. M. et al. OrthoDB in 2020: evolutionary and functional annotations of orthologs. Nucleic Acids Res 49, D389\u2013D393 (2021).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR32","doi-asserted-by":"publisher","first-page":"5825","DOI":"10.1093\/molbev\/msab293","volume":"38","author":"CP Cantalapiedra","year":"2021","unstructured":"Cantalapiedra, C. P., Hernandez-Plaza, A., Letunic, I., Bork, P. & Huerta-Cepas, J. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale. Mol Biol Evol 38, 5825\u20135829 (2021).","journal-title":"Mol Biol Evol"},{"key":"3264_CR33","doi-asserted-by":"publisher","first-page":"D480","DOI":"10.1093\/nar\/gkaa1100","volume":"49","author":"C UniProt","year":"2021","unstructured":"UniProt, C. UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res 49, D480\u2013D489 (2021).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR34","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"C Camacho","year":"2009","unstructured":"Camacho, C. et al. BLAST+: architecture and applications. BMC Bioinformatics 10, 421 (2009).","journal-title":"BMC Bioinformatics"},{"key":"3264_CR35","doi-asserted-by":"publisher","first-page":"D412","DOI":"10.1093\/nar\/gkaa913","volume":"49","author":"J Mistry","year":"2021","unstructured":"Mistry, J. et al. Pfam: The protein families database in 2021. Nucleic Acids Res 49, D412\u2013D419 (2021).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR36","doi-asserted-by":"publisher","first-page":"2251","DOI":"10.1093\/bioinformatics\/btz859","volume":"36","author":"T Aramaki","year":"2020","unstructured":"Aramaki, T. et al. KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold. Bioinformatics 36, 2251\u20132252 (2020).","journal-title":"Bioinformatics"},{"key":"3264_CR37","doi-asserted-by":"publisher","first-page":"W200","DOI":"10.1093\/nar\/gky448","volume":"46","author":"SC Potter","year":"2018","unstructured":"Potter, S. C. et al. HMMER web server: 2018 update. Nucleic Acids Res 46, W200\u2013W204 (2018).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR38","doi-asserted-by":"publisher","DOI":"10.6084\/m9.figshare.24899421","author":"Y Xu","year":"2023","unstructured":"Xu, Y. Gene function annotation of Helicoverpa assulta. figshare. Dataset. https:\/\/doi.org\/10.6084\/m9.figshare.24899421 (2023)."},{"key":"3264_CR39","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1038\/nmeth.4197","volume":"14","author":"R Patro","year":"2017","unstructured":"Patro, R., Duggal, G., Love, M. I., Irizarry, R. A. & Kingsford, C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods 14, 417\u2013419 (2017).","journal-title":"Nat Methods"},{"key":"3264_CR40","doi-asserted-by":"publisher","first-page":"e49","DOI":"10.1093\/nar\/gkr1293","volume":"40","author":"Y Wang","year":"2012","unstructured":"Wang, Y. et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 40, e49 (2012).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR41","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1016\/j.molp.2020.06.009","volume":"13","author":"C Chen","year":"2020","unstructured":"Chen, C. et al. TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data. Mol Plant 13, 1194\u20131202 (2020).","journal-title":"Mol Plant"},{"key":"3264_CR42","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1832-y","volume":"20","author":"DM Emms","year":"2019","unstructured":"Emms, D. M. & Kelly, S. OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome Biol 20, 238 (2019).","journal-title":"Genome Biol"},{"key":"3264_CR43","doi-asserted-by":"publisher","first-page":"366","DOI":"10.1038\/s41592-021-01101-x","volume":"18","author":"B Buchfink","year":"2021","unstructured":"Buchfink, B., Reuter, K. & Drost, H. G. Sensitive protein alignments at tree-of-life scale using DIAMOND. Nat Methods 18, 366\u2013368 (2021).","journal-title":"Nat Methods"},{"key":"3264_CR44","doi-asserted-by":"publisher","first-page":"3267","DOI":"10.1093\/molbev\/msx259","volume":"34","author":"DM Emms","year":"2017","unstructured":"Emms, D. M. & Kelly, S. STRIDE: Species Tree Root Inference from Gene Duplication Events. Mol Biol Evol 34, 3267\u20133278 (2017).","journal-title":"Mol Biol Evol"},{"key":"3264_CR45","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30, 772\u201380 (2013).","journal-title":"Mol Biol Evol"},{"key":"3264_CR46","doi-asserted-by":"publisher","first-page":"1972","DOI":"10.1093\/bioinformatics\/btp348","volume":"25","author":"S Capella-Gutierrez","year":"2009","unstructured":"Capella-Gutierrez, S., Silla-Martinez, J. M. & Gabaldon, T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25, 1972\u20133 (2009).","journal-title":"Bioinformatics"},{"key":"3264_CR47","doi-asserted-by":"publisher","first-page":"1586","DOI":"10.1093\/molbev\/msm088","volume":"24","author":"Z Yang","year":"2007","unstructured":"Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24, 1586\u201391 (2007).","journal-title":"Mol Biol Evol"},{"key":"3264_CR48","doi-asserted-by":"crossref","unstructured":"Kumar, S. et al. TimeTree 5: An Expanded Resource for Species Divergence Times. Mol Biol Evol 39 (2022).","DOI":"10.1093\/molbev\/msac174"},{"key":"3264_CR49","doi-asserted-by":"publisher","first-page":"5516","DOI":"10.1093\/bioinformatics\/btaa1022","volume":"36","author":"FK Mendes","year":"2021","unstructured":"Mendes, F. K., Vanderpool, D., Fulton, B. & Hahn, M. W. CAFE 5 models variation in evolutionary rates among gene families. Bioinformatics 36, 5516\u20135518 (2021).","journal-title":"Bioinformatics"},{"key":"3264_CR50","year":"2023","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJEB70911 (2023)."},{"key":"3264_CR51","year":"2023","unstructured":"European Nucleotide Archive https:\/\/www.ebi.ac.uk\/ena\/browser\/view\/GCA_963856015 (2023)."},{"key":"3264_CR52","year":"2023","unstructured":"NCBI genome database https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_023701775.1 (2023)."},{"key":"3264_CR53","year":"2024","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJEB6594 (2024)."},{"key":"3264_CR54","year":"2023","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJNA587871 (2023)."},{"key":"3264_CR55","year":"2023","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJNA590047 (2023)."},{"key":"3264_CR56","year":"2024","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJNA592822 (2024)."},{"key":"3264_CR57","year":"2024","unstructured":"European Nucleotide Archive https:\/\/identifiers.org\/ena.embl:PRJNA261645 (2024)."},{"key":"3264_CR58","doi-asserted-by":"publisher","first-page":"D311","DOI":"10.1093\/nar\/gkad672","volume":"52","author":"M Lycka","year":"2024","unstructured":"Lycka, M. et al. TeloBase: a community-curated database of telomere sequences across the tree of life. Nucleic Acids Res 52, D311\u2013D321 (2024).","journal-title":"Nucleic Acids Res"},{"key":"3264_CR59","doi-asserted-by":"publisher","DOI":"10.6084\/m9.figshare.24884526","author":"Y Xu","year":"2023","unstructured":"Xu, Y. RNA-seq analysis of oriental tobacco budworm (Helicoverpa assulta). figshare. Dataset. https:\/\/doi.org\/10.6084\/m9.figshare.24884526 (2023)."},{"key":"3264_CR60","doi-asserted-by":"publisher","DOI":"10.6084\/m9.figshare.24899049","author":"Y Xu","year":"2023","unstructured":"Xu, Y. The two haplotype draft genome sequences of Helicoverpa assulta assembled by hifiasm. figshare. Dataset. https:\/\/doi.org\/10.6084\/m9.figshare.24899049 (2023)."}],"container-title":["Scientific Data"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.nature.com\/articles\/s41597-024-03264-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s41597-024-03264-6","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s41597-024-03264-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,6]],"date-time":"2024-05-06T14:03:01Z","timestamp":1715004181000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/s41597-024-03264-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,5,6]]},"references-count":60,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["3264"],"URL":"https:\/\/doi.org\/10.1038\/s41597-024-03264-6","relation":{"references":[{"id-type":"doi","id":"10.6084\/m9.figshare.24899421","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJEB70911","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/www.ebi.ac.uk\/ena\/browser\/view\/GCA_963856015","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_023701775.1","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJEB6594","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJNA587871","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJNA590047","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJNA592822","asserted-by":"subject"},{"id-type":"uri","id":"https:\/\/identifiers.org\/ena.embl:PRJNA261645","asserted-by":"subject"},{"id-type":"doi","id":"10.6084\/m9.figshare.24884526","asserted-by":"subject"},{"id-type":"doi","id":"10.6084\/m9.figshare.24899049","asserted-by":"subject"}]},"ISSN":["2052-4463"],"issn-type":[{"value":"2052-4463","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,5,6]]},"assertion":[{"value":"25 December 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 April 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 May 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"461"}}