{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,13]],"date-time":"2026-09-13T23:03:48Z","timestamp":1789340628709,"version":"build-2803163510"},"reference-count":62,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,5,21]],"date-time":"2026-05-21T00:00:00Z","timestamp":1779321600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,9,14]],"date-time":"2026-09-14T00:00:00Z","timestamp":1789344000000},"content-version":"vor","delay-in-days":116,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Sci Data"],"DOI":"10.1038\/s41597-026-07372-3","type":"journal-article","created":{"date-parts":[[2026,5,21]],"date-time":"2026-05-21T09:35:59Z","timestamp":1779356159000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Chromosomal-level genome assembly of minute pirate bug Orius nagaii Yasunaga, 1993 (Hemiptera: Anthocoridae)"],"prefix":"10.1038","volume":"13","author":[{"given":"Zhenjuan","family":"Yin","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chengxing","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dingyin","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ruijuan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoyan","family":"Dai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junrui","family":"Zhi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,5,21]]},"reference":[{"key":"7372_CR1","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1016\/j.biocontrol.2013.09.017","volume":"67","author":"P Gomez-Polo","year":"2013","unstructured":"Gomez-Polo, P., Alomar, O., Casta\u00f1\u00e9, C., Riudavets, J. & Agust\u00ed, N. Identification of Orius spp. (Hemiptera: Anthocoridae) in vegetable crops using molecular techniques. Biol. Control. 67, 440\u2013445 (2013).","journal-title":"Biol. Control."},{"key":"7372_CR2","doi-asserted-by":"publisher","first-page":"1103","DOI":"10.1080\/00222933.2015.1104393","volume":"50","author":"K Yamada","year":"2016","unstructured":"Yamada, K., Yasunaga, T. & Artchawakom, T. The flower bug genus Orius Wolff, 1811 (Hemiptera: Heteroptera: Anthocoridae: Oriini) of Thailand. J. Nat. Hist. 50, 1103\u20131157 (2016).","journal-title":"J. Nat. Hist."},{"key":"7372_CR3","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/s10340-009-0270-0","volume":"83","author":"SAA Fathi","year":"2010","unstructured":"Fathi, S. A. A. & Nouri-Ganbalani, G. Assessing the potential for biological control of potato field pests in Ardabil, Iran: functional responses of Orius niger (Wolf.) and O. minutus (L.) (Hemiptera: Anthocoridae). J. Pest Sci. 83, 47\u201352 (2010).","journal-title":"J. Pest Sci."},{"key":"7372_CR4","first-page":"2599","volume":"111","author":"Y Ge","year":"2018","unstructured":"Ge, Y. et al. Predation of Aphis craccivora (Hemiptera: Aphididae) by Orius sauteri (Hemiptera: Anthocoridae. ) under different temperatures. J. Econ. Entomol. 111, 2599\u20132604 (2018).","journal-title":") under different temperatures. J. Econ. Entomol."},{"key":"7372_CR5","first-page":"107","volume":"8","author":"M Sharifi","year":"2021","unstructured":"Sharifi, M. et al. Evaluation of predator and prey preference of Orius niger (Wolff) (Hemiptera: Anthocoridae) in the control of important sucking pests of oilseeds. Biocontrol in Plant Protect. 8, 107\u2013118 (2021).","journal-title":"Biocontrol in Plant Protect."},{"key":"7372_CR6","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1007\/s13744-022-00982-7","volume":"52","author":"LP Silva","year":"2023","unstructured":"Silva, L. P., Souza, I. L., Marucci, R. C. & Guzman-Martinez, M. Doru luteipes (Dermaptera: Forficulidae) and Orius insidiosus (Hemiptera: Anthocoridae) as nocturnal and diurnal predators of thrips. Neotrop. Entomol. 52, 263\u2013272 (2023).","journal-title":"Neotrop. Entomol."},{"key":"7372_CR7","doi-asserted-by":"crossref","unstructured":"Wang, C. et al. The selection and validation of reference genes for RT-qPCR analysis of the predatory natural enemy Orius nagaii (Hemiptera: Anthocoridae). Insects. 15 (2024).","DOI":"10.20944\/preprints202411.0958.v1"},{"key":"7372_CR8","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1127\/entomologia\/2016\/0339","volume":"36","author":"Z Salehi","year":"2016","unstructured":"Salehi, Z., Yarahmadi, F., Rasekh, A. & Sohani, N. Functional responses of Orius albidipennis Reuter (Hemiptera, Anthocoridae) to Tuta absoluta Meyrick (Lepidoptera, Gelechiidae) on two tomato cultivars with different leaf morphological characteristics. Entomol. Gen. 36, 127\u2013136 (2016).","journal-title":"Entomol. Gen."},{"key":"7372_CR9","doi-asserted-by":"crossref","unstructured":"Du, H. et al. Effect of guanylate cyclase-22-like on ovarian development of Orius nagaii (Hemiptera: Anthocoridae). Insects. 15 (2024).","DOI":"10.3390\/insects15020110"},{"key":"7372_CR10","doi-asserted-by":"crossref","unstructured":"Wang, L. et al. Integration of Orius nagaii (Yasunaga) (Hemiptera: Anthocoridae) and eco-friendly insecticide to improve Dendrothrips minowai (Priesner) (Thysanoptera: Thripidae) control. J. Econ. Entomol. f88 (2025).","DOI":"10.1093\/jee\/toaf088"},{"key":"7372_CR11","doi-asserted-by":"publisher","first-page":"914","DOI":"10.1016\/j.pt.2024.08.003","volume":"40","author":"X Ye","year":"2024","unstructured":"Ye, X., Yang, Y., Zhao, X., Fang, Q. & Ye, G. The state of parasitoid wasp genomics. Trends Parasitol. 40, 914\u2013929 (2024).","journal-title":"Trends Parasitol."},{"key":"7372_CR12","doi-asserted-by":"publisher","first-page":"101298","DOI":"10.1016\/j.cois.2024.101298","volume":"68","author":"X Ye","year":"2025","unstructured":"Ye, X., Yang, Y., Fang, Q. & Ye, G. Genomics of insect natural enemies in agroecosystems. Curr. Opin. Insect Sci. 68, 101298 (2025).","journal-title":"Curr. Opin. Insect Sci."},{"key":"7372_CR13","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-021-08249-y","volume":"23","author":"E Bailey","year":"2022","unstructured":"Bailey, E. et al. A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus (Hemiptera: Anthocoridae), and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests. Bmc Genomics. 23, 45 (2022).","journal-title":"Bmc Genomics."},{"key":"7372_CR14","doi-asserted-by":"publisher","DOI":"10.1038\/s41597-025-05149-8","volume":"12","author":"Y Wang","year":"2025","unstructured":"Wang, Y. et al. Chromosome-level genome assembly of the predatory flower bug Orius strigicollis. Sci. Data. 12, 820 (2025).","journal-title":"Sci. Data."},{"key":"7372_CR15","doi-asserted-by":"crossref","unstructured":"Belton, J. et al. Hi-C: A comprehensive technique to capture the conformation of genomes. Methods. 58 (2012).","DOI":"10.1016\/j.ymeth.2012.05.001"},{"key":"7372_CR16","unstructured":"Bushnell, B. Bbtools. https:\/\/sourceforge.net\/projects\/bbmap\/ (2014)."},{"key":"7372_CR17","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1111\/1744-7917.13385","volume":"32","author":"C Wang","year":"2025","unstructured":"Wang, C. et al. Knockdown of vitellogenin receptor based on minute insect RNA interference methods affects the initial mature egg load in the pest natural enemy Trichogramma dendrolimi. Insect Sci. 32, 487\u2013500 (2025).","journal-title":"Insect Sci."},{"key":"7372_CR18","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-14998-3","volume":"11","author":"TR Ranallo-Benavidez","year":"2020","unstructured":"Ranallo-Benavidez, T. R., Jaron, K. S. & Schatz, M. C. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. Nat. Commun. 11, 1432 (2020).","journal-title":"Nat. Commun."},{"key":"7372_CR19","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1038\/s41592-020-01056-5","volume":"18","author":"H Cheng","year":"2021","unstructured":"Cheng, H., Concepcion, G. T., Feng, X., Zhang, H. & Li, H. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nat. Methods. 18, 170\u2013175 (2021).","journal-title":"Nat. Methods."},{"key":"7372_CR20","doi-asserted-by":"publisher","first-page":"2896","DOI":"10.1093\/bioinformatics\/btaa025","volume":"36","author":"D Guan","year":"2020","unstructured":"Guan, D. et al. Identifying and removing haplotypic duplication in primary genome assemblies. Bioinformatics. 36, 2896\u20132898 (2020).","journal-title":"Bioinformatics."},{"key":"7372_CR21","doi-asserted-by":"crossref","unstructured":"Li, H. Minimap2: Pairwise alignment for nucleotide sequences. Bioinformatics (Oxford, England). 34 (2018).","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"7372_CR22","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.cels.2016.07.002","volume":"3","author":"NC Durand","year":"2016","unstructured":"Durand, N. C. et al. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments. Cell Syst. 3, 95\u201398 (2016).","journal-title":"Cell Syst."},{"key":"7372_CR23","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1126\/science.aal3327","volume":"356","author":"O Dudchenko","year":"2017","unstructured":"Dudchenko, O. et al. De novo assembly of the Aedes Aegypti genome using Hi-C yields chromosome-length scaffolds. Science. 356, 92\u201395 (2017).","journal-title":"Science."},{"key":"7372_CR24","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/nbt.3988","volume":"35","author":"M Steinegger","year":"2017","unstructured":"Steinegger, M. & S\u00f6ding, J. Mmseqs. 2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat. Biotechnol. 35, 1026\u20131028 (2017).","journal-title":"Nat. Biotechnol."},{"key":"7372_CR25","unstructured":"NCBI Nucleotide Database. https:\/\/www.ncbi.nlm.nih.gov\/nucleotide\/ (Accessed on 16 May 2025)."},{"key":"7372_CR26","unstructured":"NCBI Univec Database. https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/tag\/univec\/ (Accessed on 16 May 2025)."},{"key":"7372_CR27","doi-asserted-by":"publisher","first-page":"e4958","DOI":"10.7717\/peerj.4958","volume":"6","author":"F Cabanettes","year":"2018","unstructured":"Cabanettes, F. & Klopp, C. D-Genies: Dot plot large genomes in an interactive, efficient and simple way. Peerj. 6, e4958 (2018).","journal-title":"Peerj."},{"key":"7372_CR28","first-page":"68","volume":"19","author":"W Yi-ping","year":"2002","unstructured":"Yi-ping, W., Hong, W. & Wen-jun, B. The Karyotype of Orius Chinensis (Hemiptera:Anthocoridae). Journal of Zhejiang A&F University. 19, 68\u201371 (2002).","journal-title":"Journal of Zhejiang A&F University."},{"key":"7372_CR29","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-02134-9","volume":"21","author":"A Rhie","year":"2020","unstructured":"Rhie, A., Walenz, B. P., Koren, S. & Phillippy, A. M. Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies. Genome Biol. 21, 245 (2020).","journal-title":"Genome Biol."},{"key":"7372_CR30","doi-asserted-by":"publisher","first-page":"9451","DOI":"10.1073\/pnas.1921046117","volume":"117","author":"JM Flynn","year":"2020","unstructured":"Flynn, J. M. et al. RepeatModeler2 for automated genomic discovery of transposable element families. Proc. Natl. Acad. Sci. USA. 117, 9451\u20139457 (2020).","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"7372_CR31","first-page":"v1272","volume":"44","author":"R Hubley","year":"2015","unstructured":"Hubley, R. et al. The Dfam database of repetitive DNA Families. Nucleic Acids Res. 44, v1272 (2015).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR32","doi-asserted-by":"publisher","DOI":"10.1186\/s13100-015-0041-9","volume":"6","author":"W Bao","year":"2015","unstructured":"Bao, W., Kojima, K. K. & Kohany, O. Repbase update, a database of repetitive elements in eukaryotic genomes. Mob. Dna. 6, 11 (2015).","journal-title":"Mob. Dna."},{"key":"7372_CR33","unstructured":"Smit, A., Hubley, R. & Green., P. Repeatmasker Open-4.0. http:\/\/www.repeatmasker.org (2013-2015)."},{"key":"7372_CR34","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-491","volume":"12","author":"C Holt","year":"2011","unstructured":"Holt, C. & Yandell, M. MAKER2: An annotation pipeline and genome-database management tool for second-generation genome projects. Bmc Bioinformatics. 12, 491 (2011).","journal-title":"Bmc Bioinformatics."},{"key":"7372_CR35","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.3317","volume":"12","author":"D Kim","year":"2015","unstructured":"Kim, D., Langmead, B. & Salzberg, S. L. HISAT: A fast spliced aligner with low memory requirements. Nat. Methods. 12, 357\u2013360 (2015).","journal-title":"Nat. Methods."},{"key":"7372_CR36","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1910-1","volume":"20","author":"S Kovaka","year":"2019","unstructured":"Kovaka, S. et al. Transcriptome assembly from long-read RNA-seq alignments with StringTie2. Genome Biol. 20, 278 (2019).","journal-title":"Genome Biol."},{"key":"7372_CR37","doi-asserted-by":"publisher","first-page":"767","DOI":"10.1093\/bioinformatics\/btv661","volume":"32","author":"KJ Hoff","year":"2016","unstructured":"Hoff, K. J., Lange, S., Lomsadze, A., Borodovsky, M. & Stanke, M. BRAKER1: Unsupervised RNA-seq-based genome annotation with Genemark-ET and AUGUSTUS. Bioinformatics. 32, 767\u2013769 (2016).","journal-title":"Bioinformatics."},{"key":"7372_CR38","doi-asserted-by":"publisher","first-page":"W309","DOI":"10.1093\/nar\/gkh379","volume":"32","author":"M Stanke","year":"2004","unstructured":"Stanke, M., Steinkamp, R., Waack, S. & Morgenstern, B. AUGUSTUS: A web server for gene finding in eukaryotes. Nucleic Acids Res. 32, W309\u2013W312 (2004).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR39","first-page":"a26","volume":"2","author":"T Br\u016fna","year":"2020","unstructured":"Br\u016fna, T., Lomsadze, A. & Borodovsky, M. GeneMark-EP+: Eukaryotic gene prediction with self-training in the space of genes and proteins. NAR Genom. Bioinform. 2, a26 (2020).","journal-title":"NAR Genom. Bioinform."},{"key":"7372_CR40","doi-asserted-by":"publisher","first-page":"D807","DOI":"10.1093\/nar\/gky1053","volume":"47","author":"EV Kriventseva","year":"2019","unstructured":"Kriventseva, E. V. et al. OrthoDB v10: Sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs. Nucleic Acids Res. 47, D807\u2013D811 (2019).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR41","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1007\/978-1-4939-9173-0_9","volume":"1962","author":"J Keilwagen","year":"2019","unstructured":"Keilwagen, J., Hartung, F. & Grau, J. GeMoMa: Homology-based gene prediction utilizing intron position conservation and RNA-seq data. Methods Mol Biol. 1962, 161\u2013177 (2019).","journal-title":"Methods Mol Biol."},{"key":"7372_CR42","doi-asserted-by":"publisher","first-page":"e1000313","DOI":"10.1371\/journal.pbio.1000313","volume":"8","author":"International Aphid Genomics Consortium","year":"2010","unstructured":"International Aphid Genomics Consortium. Genome sequence of the pea aphid Acyrthosiphon pisum. Plos. Biol. 8, e1000313 (2010).","journal-title":"Plos. Biol."},{"key":"7372_CR43","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-019-5642-0","volume":"20","author":"A Wallberg","year":"2019","unstructured":"Wallberg, A. et al. A hybrid de novo genome assembly of the honeybee, Apis Mellifera, with chromosome-length scaffolds. BMC Genomics. 20, 275 (2019).","journal-title":"BMC Genomics."},{"key":"7372_CR44","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-016-0321-y","volume":"14","author":"W Chen","year":"2016","unstructured":"Chen, W. et al. The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance. BMC Biol. 14, 110 (2016).","journal-title":"BMC Biol."},{"key":"7372_CR45","doi-asserted-by":"publisher","first-page":"2185","DOI":"10.1126\/science.287.5461.2185","volume":"287","author":"MD Adams","year":"2000","unstructured":"Adams, M. D. et al. The genome sequence of Drosophila melanogaster. Science. 287, 2185\u20132195 (2000).","journal-title":"Science."},{"key":"7372_CR46","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1016\/j.ibmb.2019.02.002","volume":"107","author":"M Kawamoto","year":"2019","unstructured":"Kawamoto, M. et al. High-quality genome assembly of the silkworm, Bombyx mori. Insect Biochem. Mol. Biol. 107, 53\u201362 (2019).","journal-title":"Insect Biochem. Mol. Biol."},{"key":"7372_CR47","doi-asserted-by":"publisher","first-page":"949","DOI":"10.1038\/nature06784","volume":"452","author":"S Richards","year":"2008","unstructured":"Richards, S. et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452, 949\u2013955 (2008).","journal-title":"Nature."},{"key":"7372_CR48","doi-asserted-by":"publisher","first-page":"366","DOI":"10.1038\/s41592-021-01101-x","volume":"18","author":"B Buchfink","year":"2021","unstructured":"Buchfink, B., Reuter, K. & Drost, H. Sensitive protein alignments at tree-of-life scale using DIAMOND. Nat. Methods. 18, 366\u2013368 (2021).","journal-title":"Nat. Methods."},{"key":"7372_CR49","doi-asserted-by":"publisher","first-page":"D427","DOI":"10.1093\/nar\/gky995","volume":"47","author":"S El-Gebali","year":"2019","unstructured":"El-Gebali, S. et al. The Pfam protein families database in 2019. Nucleic Acids Res. 47, D427\u2013D432 (2019).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR50","doi-asserted-by":"publisher","first-page":"D493","DOI":"10.1093\/nar\/gkx922","volume":"46","author":"I Letunic","year":"2018","unstructured":"Letunic, I. & Bork, P. 20 years of the SMART protein domain annotation resource. Nucleic Acids Res. 46, D493\u2013D496 (2018).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR51","doi-asserted-by":"publisher","first-page":"D380","DOI":"10.1093\/nar\/gkn762","volume":"37","author":"D Wilson","year":"2009","unstructured":"Wilson, D. et al. SUPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Res. 37, D380\u2013D386 (2009).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR52","doi-asserted-by":"crossref","unstructured":"Marchler-Bauer, A. et al. CDD\/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 45 (2016).","DOI":"10.1093\/nar\/gkw1129"},{"key":"7372_CR53","doi-asserted-by":"publisher","first-page":"D190","DOI":"10.1093\/nar\/gkw1107","volume":"45","author":"RD Finn","year":"2017","unstructured":"Finn, R. D. et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res. 45, D190\u2013D199 (2017).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR54","doi-asserted-by":"publisher","first-page":"D309","DOI":"10.1093\/nar\/gky1085","volume":"47","author":"J Huerta-Cepas","year":"2019","unstructured":"Huerta-Cepas, J. et al. eggNOG 5.0: A hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 47, D309\u2013D314 (2019).","journal-title":"Nucleic Acids Res."},{"key":"7372_CR55","doi-asserted-by":"publisher","first-page":"2115","DOI":"10.1093\/molbev\/msx148","volume":"34","author":"J Huerta-Cepas","year":"2017","unstructured":"Huerta-Cepas, J. et al. Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. Mol. Biol. Evol. 34, 2115\u20132122 (2017).","journal-title":"Mol. Biol. Evol."},{"key":"7372_CR56","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1016\/j.molp.2020.06.009","volume":"13","author":"C Chen","year":"2020","unstructured":"Chen, C. et al. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Mol. Plant. 13, 1194\u20131202 (2020).","journal-title":"Mol. Plant."},{"key":"7372_CR57","doi-asserted-by":"publisher","first-page":"2933","DOI":"10.1093\/bioinformatics\/btt509","volume":"29","author":"EP Nawrocki","year":"2013","unstructured":"Nawrocki, E. P. & Eddy, S. R. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 29, 2933\u20132935 (2013).","journal-title":"Bioinformatics."},{"key":"7372_CR58","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-1-4939-9173-0_1","volume":"1962","author":"PP Chan","year":"2019","unstructured":"Chan, P. P. & Lowe, T. M. tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods Mol Biol. 1962, 1\u201314 (2019).","journal-title":"Methods Mol Biol."},{"key":"7372_CR59","year":"2025","unstructured":"NCBI Sequence Read Archive https:\/\/identifiers.org\/ncbi\/insdc.sra:SRP584448 (2025)."},{"key":"7372_CR60","unstructured":"Wang, C. Genebank. https:\/\/identifiers.org\/ncbi\/insdc.gca:GCA_050947255.1 (2025)."},{"key":"7372_CR61","doi-asserted-by":"publisher","unstructured":"Wang, C. The annotation results for repeated sequences, gene structure, and functional prediction of Orius nagaii. Figshare. https:\/\/doi.org\/10.6084\/m9.figshare.29315519 (2025).","DOI":"10.6084\/m9.figshare.29315519"},{"key":"7372_CR62","doi-asserted-by":"publisher","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","volume":"31","author":"FA Sim\u00e3o","year":"2015","unstructured":"Sim\u00e3o, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V. & Zdobnov, E. M. BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 31, 3210\u20133212 (2015).","journal-title":"Bioinformatics."}],"container-title":["Scientific Data"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.nature.com\/articles\/s41597-026-07372-3","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s41597-026-07372-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s41597-026-07372-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,13]],"date-time":"2026-09-13T22:33:09Z","timestamp":1789338789000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/s41597-026-07372-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,5,21]]},"references-count":62,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["7372"],"URL":"https:\/\/doi.org\/10.1038\/s41597-026-07372-3","relation":{"references":[{"id-type":"uri","id":"https:\/\/identifiers.org\/ncbi\/insdc.sra:SRP584448","asserted-by":"subject"}]},"ISSN":["2052-4463"],"issn-type":[{"value":"2052-4463","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,5,21]]},"assertion":[{"value":"23 June 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 April 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 May 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Ethics"}}],"article-number":"1308"}}