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There is little information on changes and recovery dynamics of the nasopharyngeal (NP) microbiota of older adults associated with an ILI. Here, we compared the NP microbiota in older adults reporting (n\u2009=\u2009240) or not (n\u2009=\u2009157) ILI during the 2014\u20132015 influenza season at different times of the ILI event. A small but significant effect of the ILI was observed on the microbiota community composition and structure when compared to controls and samples collected at recovery.\n                    <jats:italic>Corynebacterium<\/jats:italic>\n                    was negatively associated with ILI and its abundance increased after recovery. Potential pathobionts such as\n                    <jats:italic>Haemophilus<\/jats:italic>\n                    ,\n                    <jats:italic>Porphyromonas<\/jats:italic>\n                    and\n                    <jats:italic>Gemella<\/jats:italic>\n                    had higher abundances during acute-ILI. Stability and changes in the NP microbial community showed individual dynamics. Key core genera,\n                    <jats:italic>Corynebacterium, Moraxella<\/jats:italic>\n                    and\n                    <jats:italic>Dolosigranulum<\/jats:italic>\n                    exhibited higher inter-individual variability in acute-ILI, but showed comparable variability to controls after recovery. Participants in the ILI group with higher core microbiota abundances at the acute phase showed higher microbiota stability after recovery. Our findings demonstrate that acute-ILI is associated with alterations in the phylogenetic structure of the NP microbiota in older adults. The variation in the core microbiota suggests imbalances in the ecosystem, which could potentially play a role in the susceptibility and recovery of the NP microbiota after an ILI event.\n                  <\/jats:p>","DOI":"10.1038\/s41598-022-05618-9","type":"journal-article","created":{"date-parts":[[2022,2,3]],"date-time":"2022-02-03T06:05:49Z","timestamp":1643868349000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":14,"title":["Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population"],"prefix":"10.1038","volume":"12","author":[{"given":"Sudarshan A.","family":"Shetty","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Josine","family":"van Beek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elske","family":"Bijvank","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"Groot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sjoerd","family":"Kuiling","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thijs","family":"Bosch","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Debbie","family":"van Baarle","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susana","family":"Fuentes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,2,3]]},"reference":[{"key":"5618_CR1","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1038\/s41579-020-0377-0","volume":"18","author":"EM Wood-Charlson","year":"2020","unstructured":"Wood-Charlson, E. 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