{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,31]],"date-time":"2026-10-31T03:45:26Z","timestamp":1793418326384,"version":"4.5.0"},"reference-count":54,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2023,1,11]],"date-time":"2023-01-11T00:00:00Z","timestamp":1673395200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2023,1,11]],"date-time":"2023-01-11T00:00:00Z","timestamp":1673395200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Commun Biol"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    The soil-borne fungus\n                    <jats:italic>Fusarium oxysporum<\/jats:italic>\n                    f. sp. c\n                    <jats:italic>ubense<\/jats:italic>\n                    tropical race 4 (\n                    <jats:italic>Foc<\/jats:italic>\n                    TR4) causes Fusarium wilt of banana (FWB), which devastates banana production worldwide. Biocontrol is considered to be the most efficient approach to reducing FWB. Here we introduce an approach that spatiotemporally applies\n                    <jats:italic>Piriformospore indica<\/jats:italic>\n                    and\n                    <jats:italic>Streptomyces morookaensis<\/jats:italic>\n                    strains according to their respective strength to increase biocontrol efficacy of FWB.\n                    <jats:italic>P. indica<\/jats:italic>\n                    successfully colonizes banana roots, promotes lateral root formation, inhibits\n                    <jats:italic>Foc<\/jats:italic>\n                    TR4 growth inside the banana plants and reduces FWB.\n                    <jats:italic>S. morookaensis<\/jats:italic>\n                    strain Sm4-1986 secretes different secondary compounds, of which xerucitrinin A (XcA) and 6-pentyl-\u03b1-pyrone (6-PP) show the strongest anti-\n                    <jats:italic>Foc<\/jats:italic>\n                    TR4 activity. XcA chelates iron, an essential nutrient in pathogen-plant interaction that determines the output of FWB. 6-PP, a volatile organic compound, inhibits\n                    <jats:italic>Foc<\/jats:italic>\n                    TR4 germination and promotes banana growth. Biocontrol trials in the field demonstrated that application of\n                    <jats:italic>S. morookaensis<\/jats:italic>\n                    lead to improvement of soil properties and increase of rhizosphere-associated microbes that are beneficial to banana growth, which significantly reduces disease incidence of FWB. Our study suggests that optimal utilization of the two biocontrol strains increases efficacy of biocontrol and that regulating iron accessibility in the rhizosphere is a promising strategy to control FWB.\n                  <\/jats:p>","DOI":"10.1038\/s42003-023-04417-w","type":"journal-article","created":{"date-parts":[[2023,1,11]],"date-time":"2023-01-11T07:06:12Z","timestamp":1673420772000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":49,"title":["Spatiotemporal biocontrol and rhizosphere microbiome analysis of Fusarium wilt of banana"],"prefix":"10.1038","volume":"6","author":[{"given":"Zhiyan","family":"Zhu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guiyun","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rufang","family":"Deng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoying","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haibo","family":"Tan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yaping","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3266-8913","authenticated-orcid":false,"given":"Zhihong","family":"Tian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1815-6735","authenticated-orcid":false,"given":"Jianxiong","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2023,1,11]]},"reference":[{"key":"4417_CR1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-683","volume":"14","author":"MW Davey","year":"2013","unstructured":"Davey, M. W. et al. A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter-and intra-specific Musa hybrids. BMC Genomics 14, 683 (2013).","journal-title":"BMC Genomics"},{"key":"4417_CR2","doi-asserted-by":"publisher","first-page":"810","DOI":"10.1038\/s41477-019-0452-6","volume":"5","author":"Z Wang","year":"2019","unstructured":"Wang, Z. et al. Musa balbisiana genome reveals subgenome evolution and functional divergence. Nat. Plants 5, 810\u2013821 (2019).","journal-title":"Nat. Plants"},{"key":"4417_CR3","doi-asserted-by":"publisher","first-page":"616","DOI":"10.3389\/fmicb.2019.00616","volume":"10","author":"G Bubici","year":"2019","unstructured":"Bubici, G., Kaushal, M., Prigigallo, M. I., G\u00f3mez-Lama Caban\u00e1s, C. & Mercado-Blanco, J. Biological control agents against Fusarium wilt of banana. Front. Microbiol. 10, 616 (2019).","journal-title":"Front. Microbiol."},{"key":"4417_CR4","unstructured":"FAOSTAT. http:\/\/www.fao.org\/faostat\/en\/#home (2020)."},{"key":"4417_CR5","unstructured":"Dusunceli, F. Global programme on banana Fusarium wilt disease: protecting banana production from the disease with focus on tropical race 4 (TR4). Available online at http:\/\/www.fao.org (2017)."},{"key":"4417_CR6","doi-asserted-by":"publisher","first-page":"1496","DOI":"10.1038\/s41467-017-01670-6","volume":"8","author":"J Dale","year":"2017","unstructured":"Dale, J. et al. Transgenic Cavendish bananas with resistance to Fusarium wilt tropical race 4. Nat. Commun. 8, 1496\u20131504 (2017).","journal-title":"Nat. Commun."},{"key":"4417_CR7","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1038\/504195a","volume":"504","author":"D Butler","year":"2013","unstructured":"Butler, D. Fungus threatens top banana. Nature 504, 195\u2013196 (2013).","journal-title":"Nature"},{"key":"4417_CR8","doi-asserted-by":"publisher","first-page":"193","DOI":"10.17660\/ActaHortic.2009.828.19","volume":"828","author":"I Buddenhagen","year":"2009","unstructured":"Buddenhagen, I. Understanding strain diversity in Fusarium oxysporum f. sp. cubense and history of introduction of \u2018tropical race 4\u2019 to better manage banana production. Acta Hortic. 828, 193\u2013204 (2009).","journal-title":"Acta Hortic."},{"key":"4417_CR9","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1038\/d41586-019-02770-7","volume":"574","author":"A Maxmen","year":"2019","unstructured":"Maxmen, A. CRISPR could save bananas from fungus. Nature 574, 15 (2019).","journal-title":"Nature"},{"key":"4417_CR10","doi-asserted-by":"publisher","first-page":"580","DOI":"10.1094\/PDIS.2004.88.6.580","volume":"88","author":"SC Hwang","year":"2004","unstructured":"Hwang, S. C. & Ko, W. H. Cavendish banana cultivars resistant to Fusarium wilt acquired through somaclonal variation in Taiwan. Plant Dis. 88, 580\u2013588 (2004).","journal-title":"Plant Dis."},{"key":"4417_CR11","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1016\/j.cropro.2004.11.003","volume":"24","author":"D Spadaro","year":"2005","unstructured":"Spadaro, D. & Gullino, M. L. Improving the efficacy of biocontrol agents against soilborne pathogens. Crop Prot. 24, 601\u2013613 (2005).","journal-title":"Crop Prot."},{"key":"4417_CR12","doi-asserted-by":"publisher","first-page":"13386","DOI":"10.1073\/pnas.0504423102","volume":"102","author":"F Waller","year":"2005","unstructured":"Waller, F. et al. The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield. Proc. Natl Acad. Sci. USA 102, 13386\u201313391 (2005).","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"4417_CR13","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1094\/MPMI-05-10-0110","volume":"24","author":"YC Lee","year":"2011","unstructured":"Lee, Y. C. et al. Growth promotion of Chinese cabbage and Arabidopsis by Piriformospora indica is not stimulated by mycelium-synthesized auxin. Mol. Plant Microbe Interact. 24, 421\u2013431 (2011).","journal-title":"Mol. Plant Microbe Interact."},{"key":"4417_CR14","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1186\/s12870-019-2105-3","volume":"19","author":"W Ye","year":"2019","unstructured":"Ye, W. et al. Colonisation of Oncidium orchid roots by the endophyte Piriformospora indica restricts Erwinia chrysanthemi infection, stimulates accumulation of NBS-LRR resistance gene transcripts and represses their targeting micro-RNAs in leaves. BMC Plant Biol. 19, 601\u2013617 (2019).","journal-title":"BMC Plant Biol."},{"key":"4417_CR15","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1007\/s10658-019-01863-3","volume":"156","author":"CZ Cheng","year":"2020","unstructured":"Cheng, C. Z. et al. The root endophytic fungus Serendipita indica improves resistance of banana to Fusarium oxysporum f. sp. cubense tropical race 4. Eur. J. Plant Pathol. 156, 87\u2013100 (2020).","journal-title":"Eur. J. Plant Pathol."},{"key":"4417_CR16","doi-asserted-by":"publisher","first-page":"393","DOI":"10.3390\/biology11030393","volume":"11","author":"C Cheng","year":"2022","unstructured":"Cheng, C. et al. Influences of Serendipita indica and Dictyophorae echinovolvata on the growth and Fusarium Wilt disease resistance of banana. Biology 11, 393 (2022).","journal-title":"Biology"},{"key":"4417_CR17","doi-asserted-by":"publisher","first-page":"1462","DOI":"10.1094\/PDIS.2003.87.12.1462","volume":"87","author":"S Rose","year":"2003","unstructured":"Rose, S., Parker, M. & Punja, Z. K. Efficacy of biological and chemical treatments for control of Fusarium root and stem rot on greenhouse cucumber. Plant Dis. 87, 1462\u20131470 (2003).","journal-title":"Plant Dis."},{"key":"4417_CR18","doi-asserted-by":"publisher","first-page":"1179","DOI":"10.1007\/s00253-018-09577-y","volume":"103","author":"OS Olanrewaju","year":"2019","unstructured":"Olanrewaju, O. S. & Babalola, O. O. Streptomyces: implications and interactions in plant growth promotion. Appl. Microbiol. Biotechnol. 103, 1179\u20131188 (2019).","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"4417_CR19","doi-asserted-by":"publisher","first-page":"e602591","DOI":"10.3389\/fmicb.2020.602591","volume":"11","author":"T Jing","year":"2020","unstructured":"Jing, T. et al. Newly isolated Streptomyces sp. JBS5-6 as a potential biocontrol agent to control banana Fusarium wilt: genome sequencing and secondary metabolite cluster profiles. Front. Microbiol. 11, e602591 (2020).","journal-title":"Front. Microbiol."},{"key":"4417_CR20","doi-asserted-by":"publisher","first-page":"874819","DOI":"10.3389\/fpls.2022.874819","volume":"13","author":"L Zhang","year":"2022","unstructured":"Zhang, L. et al. Biocontrol potential of endophytic Streptomyces malaysiensis 8ZJF-21 from medicinal plant against banana fusarium wilt caused by Fusarium oxysporum f. sp. cubense tropical race 4. Front. Plant Sci. 13, 874819 (2022).","journal-title":"Front. Plant Sci."},{"key":"4417_CR21","doi-asserted-by":"publisher","first-page":"706647","DOI":"10.3389\/fmicb.2021.706647","volume":"12","author":"N Zou","year":"2021","unstructured":"Zou, N. et al. A novel antifungal actinomycete Streptomyces sp. Strain H3-2 effectively controls banana Fusarium Wilt. Front. Microbiol. 12, 706647 (2021).","journal-title":"Front. Microbiol."},{"key":"4417_CR22","first-page":"2287","volume":"8","author":"HY Zhang","year":"2013","unstructured":"Zhang, H. Y., Xue, Q. H., Shen, G. H. & Wang, D. S. Effects of actinomycetes agent on ginseng growth and rhizosphere soil microflora. Chin. J. Appl. Ecol. 8, 2287\u20132293 (2013).","journal-title":"Chin. J. Appl. Ecol."},{"key":"4417_CR23","doi-asserted-by":"publisher","first-page":"272","DOI":"10.1007\/PL00012959","volume":"66","author":"M Hyakumachi","year":"2000","unstructured":"Hyakumachi, M. Studies on biological control of soilborne plant pathogens. J. Gen. Plant Pathol. 66, 272\u2013274 (2000).","journal-title":"J. Gen. Plant Pathol."},{"key":"4417_CR24","doi-asserted-by":"publisher","first-page":"1002","DOI":"10.1038\/s41564-020-0719-8","volume":"5","author":"S Gu","year":"2020","unstructured":"Gu, S. et al. Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nat. Microbiol. 5, 1002\u20131010 (2020).","journal-title":"Nat. Microbiol."},{"key":"4417_CR25","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1007\/s40858-020-00396-z","volume":"46","author":"Z Zhu","year":"2020","unstructured":"Zhu, Z., Tian, Z. & Li, J. A Streptomyces morookaensis strain promotes plant growth and suppresses Fusarium wilt of banana. Trop. Plant Pathol. 46, 175\u2013185 (2020).","journal-title":"Trop. Plant Pathol."},{"key":"4417_CR26","doi-asserted-by":"publisher","unstructured":"Wu, G. Y. et al. Chemical constituents from the Streptomyces morookaensis strain Sm4-1986. Nat. Prod. Res. https:\/\/doi.org\/10.1080\/14786419.2021.1881095 (2021).","DOI":"10.1080\/14786419.2021.1881095"},{"key":"4417_CR27","doi-asserted-by":"publisher","first-page":"913","DOI":"10.1111\/nph.16193","volume":"225","author":"S Liu","year":"2020","unstructured":"Liu, S. et al. Fusaric acid instigates the invasion of banana by Fusarium oxysporum f. sp. cubense TR4. N. Phytol. 225, 913\u2013929 (2020).","journal-title":"N. Phytol."},{"key":"4417_CR28","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1007\/s13199-013-0246-y","volume":"60","author":"KR Unnikumar","year":"2013","unstructured":"Unnikumar, K. R., Sree, K. S. & Varma, A. Piriformospora indica: a versatile root endophytic symbiont. Symbiosis 60, 107\u2013113 (2013).","journal-title":"Symbiosis"},{"key":"4417_CR29","doi-asserted-by":"publisher","first-page":"1029","DOI":"10.1094\/PHYTO-10-18-0384-R","volume":"109","author":"H Dong","year":"2019","unstructured":"Dong, H. et al. Histological and gene expression analyses in banana reveals the pathogenic differences between races 1 and 4 of banana Fusarium wilt pathogen. Phytopathology 109, 1029\u20131042 (2019).","journal-title":"Phytopathology"},{"key":"4417_CR30","doi-asserted-by":"publisher","first-page":"2024","DOI":"10.1002\/jsfa.4414","volume":"91","author":"L Hernandez-Apaolaza","year":"2011","unstructured":"Hernandez-Apaolaza, L. & Lucena, L. L. Influence of irradiation time and solution concentration on the photochemical degradation of EDDHA\/Fe3+: effect of its photodecomposition products on soybean growth. J. Sci. Food Agric. 91, 2024\u20132030 (2011).","journal-title":"J. Sci. Food Agric."},{"key":"4417_CR31","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1007\/s00425-016-2502-x","volume":"244","author":"K Kovacs","year":"2016","unstructured":"Kovacs, K. et al. Revisiting the iron pools in cucumber roots: identification and localization. Planta 244, 167\u2013169 (2016).","journal-title":"Planta"},{"key":"4417_CR32","doi-asserted-by":"publisher","first-page":"18450","DOI":"10.1073\/pnas.0605697103","volume":"103","author":"S Deshmukh","year":"2006","unstructured":"Deshmukh, S. et al. The root endophytic fungus Piriformospora indica requires host cell death for proliferation during mutualistic symbiosis with barley. Proc. Natl Acad. Sci. USA 103, 18450\u201318457 (2006).","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"4417_CR33","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1111\/j.1399-3054.2007.00983.x","volume":"131","author":"A Sirrenberg","year":"2007","unstructured":"Sirrenberg, A. et al. Piriformospora indica affects plant growth by auxin production. Physiol. Plant. 131, 581\u2013589 (2007).","journal-title":"Physiol. Plant."},{"key":"4417_CR34","doi-asserted-by":"crossref","unstructured":"Varma, A., Kost, G. & Oelm\u00fcller, R. Piriformospora indica (Springer-Verlag Berlin Heidelberg, 2013).","DOI":"10.1007\/978-3-642-33802-1"},{"key":"4417_CR35","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1126\/science.1245871","volume":"343","author":"JEM Vermeer","year":"2014","unstructured":"Vermeer, J. E. M. et al. A spatial accommodation by neighboring cells is required for organ initiation in Arabidopsis. Science 343, 178\u2013183 (2014).","journal-title":"Science"},{"key":"4417_CR36","doi-asserted-by":"publisher","unstructured":"Wachsman, G., Zhang, J. Y., Moreno-Risueno, M. A., Anderson, C. T. & Benfey, P. N. Cell wall remodeling and vesicle trafficking mediate the root clock in Arabidopsis. bioRxiv https:\/\/doi.org\/10.1101\/2020.03.10.985747 (2020).","DOI":"10.1101\/2020.03.10.985747"},{"key":"4417_CR37","doi-asserted-by":"publisher","first-page":"1567","DOI":"10.1094\/Phyto-72-1567","volume":"72","author":"FM Scher","year":"1982","unstructured":"Scher, F. M. & Baker, R. Effect of Pseudomonas putida and a synthetic iron chelator on induction of soil suppressiveness of Fusarium wilt pathogens. Phytopathology 72, 1567\u20131573 (1982).","journal-title":"Phytopathology"},{"key":"4417_CR38","doi-asserted-by":"publisher","first-page":"e23012","DOI":"10.4161\/psb.23012","volume":"8","author":"MS Lopez-Berges","year":"2013","unstructured":"Lopez-Berges, M. S. et al. Iron competition in fungus-plant interactions: The battle takes place in the rhizosphere. Plant Signal. Behav. 8, e23012 (2013).","journal-title":"Plant Signal. Behav."},{"key":"4417_CR39","doi-asserted-by":"publisher","first-page":"867","DOI":"10.1017\/S0953756296003462","volume":"101","author":"L Gasoni","year":"1997","unstructured":"Gasoni, L. & de Gurfinkel, B. S. The endophyte Cladorrhinum foecundissimum in cotton roots: phosphorus uptake and host growth. Mycol. Res. 101, 867\u2013870 (1997).","journal-title":"Mycol. Res."},{"key":"4417_CR40","first-page":"1","volume":"347","author":"DR Hoagland","year":"1950","unstructured":"Hoagland, D. R. & Arnon, I. The water-culture method for growing plants without soil. Calif. Agric. Exp. Stat. Circ. 347, 1\u201332 (1950).","journal-title":"Calif. Agric. Exp. Stat. Circ."},{"key":"4417_CR41","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-374","volume":"13","author":"CY Li","year":"2012","unstructured":"Li, C. Y. et al. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4. BMC Genomics 13, 374 (2012).","journal-title":"BMC Genomics"},{"key":"4417_CR42","doi-asserted-by":"publisher","first-page":"103376","DOI":"10.1016\/j.jprot.2019.05.004","volume":"203","author":"HH Dong","year":"2019","unstructured":"Dong, H. H., Li, Y. F., Fan, H. Y., Zhou, D. B. & Li, H. P. Quantitative proteomics analysis reveals resistance differences of banana cultivar \u2018Brazilian\u2019 to Fusarium oxysporum f. sp. cubense races 1 and 4. J. Proteom. 203, 103376 (2019).","journal-title":"J. Proteom."},{"key":"4417_CR43","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1111\/ppa.12335","volume":"64","author":"M Rabiey","year":"2015","unstructured":"Rabiey, M., Ullah, I. & Shaw, M. W. The endophytic fungus Piriformospora indica protects wheat from Fusarium crown rot disease in simulated UK autumn conditions. Plant Pathol. 64, 1\u201312 (2015).","journal-title":"Plant Pathol."},{"key":"4417_CR44","doi-asserted-by":"publisher","first-page":"447","DOI":"10.1007\/s10658-015-0697-5","volume":"143","author":"C Zuo","year":"2015","unstructured":"Zuo, C. et al. The toxic mechanism and bioactive components of Chinese leek root exudates acting against Fusarium oxysporum f. sp. cubense tropical race 4. Eur. J. Plant Pathol. 143, 447\u2013460 (2015).","journal-title":"Eur. J. Plant Pathol."},{"key":"4417_CR45","doi-asserted-by":"publisher","first-page":"506","DOI":"10.1094\/PHYTO.1999.89.6.506","volume":"89","author":"N Benhamou","year":"1999","unstructured":"Benhamou, N., Rey, P., Picard, K. & Tirilly, Y. Ultrastructural and cytochemical aspects of the interaction between the mycoparasite Pythium oligandrum and soilborne plant pathogens. Phytopathology 89, 506\u2013517 (1999).","journal-title":"Phytopathology"},{"key":"4417_CR46","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1016\/j.foodcont.2014.04.037","volume":"46","author":"F Xing","year":"2014","unstructured":"Xing, F. et al. Growth inhibition and morphological alterations of Fusarium verticillioides by cinnamon oil and cinnamaldehyde. Food Control 46, 343\u2013350 (2014).","journal-title":"Food Control"},{"key":"4417_CR47","unstructured":"Brundrett, M. Methods in Mycorrhiza Research (Mycologue Publications, 1994)."},{"key":"4417_CR48","doi-asserted-by":"publisher","first-page":"445","DOI":"10.1016\/S0261-2194(99)00043-5","volume":"18","author":"RC Ploetz","year":"1999","unstructured":"Ploetz, R. C., Haynes, J. L. & Vasquez, A. Responses of new banana accessions in South Florida to Panama disease. Crop Prot. 18, 445\u2013449 (1999).","journal-title":"Crop Prot."},{"key":"4417_CR49","first-page":"1","volume":"2","author":"HR Almadhoun","year":"2018","unstructured":"Almadhoun, H. R. & Abu-Naser, S. S. Banana knowledge based system diagnosis and treatment. Int. J. Acad. Pedag. Res. 2, 1\u201311 (2018).","journal-title":"Int. J. Acad. Pedag. Res."},{"key":"4417_CR50","doi-asserted-by":"publisher","first-page":"e124465","DOI":"10.1016\/j.biortech.2020.124465","volume":"321","author":"J Feng","year":"2021","unstructured":"Feng, J. et al. Streptomyces griseorubens JSD-1 promotes rice straw composting efficiency in industrial-scale fermenter: Evaluation of change in physicochemical properties and microbial community. Bioresour. Technol. 321, e124465 (2021).","journal-title":"Bioresour. Technol."},{"key":"4417_CR51","doi-asserted-by":"publisher","first-page":"2957","DOI":"10.1093\/bioinformatics\/btr507","volume":"27","author":"T Magoc","year":"2011","unstructured":"Magoc, T. & Salzberg, S. L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957\u20132963 (2011).","journal-title":"Bioinformatics"},{"key":"4417_CR52","doi-asserted-by":"publisher","first-page":"6548","DOI":"10.1073\/pnas.1302837110","volume":"110","author":"JA Peiffer","year":"2013","unstructured":"Peiffer, J. A. et al. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc. Natl Acad. Sci. USA 110, 6548\u20136553 (2013).","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"4417_CR53","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-6-r60","volume":"12","author":"N Segata","year":"2011","unstructured":"Segata, N. et al. Metagenomic biomarker discovery and explanation. Genome Biol. 12, R60 (2011).","journal-title":"Genome Biol."},{"key":"4417_CR54","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1038\/s41396-018-0291-x","volume":"13","author":"BK Kuntal","year":"2019","unstructured":"Kuntal, B. K., Chandrakar, K., Sadhu, S. & Mande, S. S. \u2018NetShift\u2019: a methodology for understanding \u2018driver microbes\u2019 from healthy and disease microbiome datasets. ISME J. 13, 442\u2013454 (2019).","journal-title":"ISME J."}],"container-title":["Communications Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.nature.com\/articles\/s42003-023-04417-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-023-04417-w","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-023-04417-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,11]],"date-time":"2023-01-11T08:12:58Z","timestamp":1673424778000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/s42003-023-04417-w"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,1,11]]},"references-count":54,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2023,12]]}},"alternative-id":["4417"],"URL":"https:\/\/doi.org\/10.1038\/s42003-023-04417-w","relation":{},"ISSN":["2399-3642"],"issn-type":[{"value":"2399-3642","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,1,11]]},"assertion":[{"value":"21 June 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 January 2023","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 January 2023","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"27"}}