{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,14]],"date-time":"2026-04-14T10:59:44Z","timestamp":1776164384639,"version":"3.50.1"},"reference-count":90,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,11,13]],"date-time":"2024-11-13T00:00:00Z","timestamp":1731456000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2024,11,13]],"date-time":"2024-11-13T00:00:00Z","timestamp":1731456000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Commun Biol"],"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Understanding the profound influence of climatic and tectonic histories on adaptation and speciation is a crucial focus in biology research. While voyages like Humboldt\u2019s expedition shaped our understanding of adaptation, the origin of current biodiversity remains unclear \u2013 whether it arose in situ or through dispersal from analogous habitats. Situated in the geologically complex Australopacific region, our study focuses on <jats:italic>Limbodessus<\/jats:italic> diving beetles (Dytiscidae), a diverse genus distributed from underground aquifers in Western Australia to alpine meadows in New Guinea. Using low-coverage whole-genome sequencing, we established a time-calibrated phylogenetic tree, elucidating <jats:italic>Limbodessus<\/jats:italic>\u2019 origin in the mid-late Miocene, most likely in the Sahul continent (i.e., Australia and New Guinea) and western Pacific archipelagos. Our results provide evidence for parallel colonization and speciation at extreme altitudinal ends, driven by aridification in Australia, influencing subterranean colonization, and in situ diversification of alpine taxa by passive-uplifting of local biota in New Guinea. Furthermore, our findings highlight instances of subterranean speciation in isolated underground aquifers, marked by recurrent independent colonizations of this habitat.<\/jats:p>","DOI":"10.1038\/s42003-024-07181-7","type":"journal-article","created":{"date-parts":[[2024,11,13]],"date-time":"2024-11-13T08:02:46Z","timestamp":1731484966000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Aridification and major geotectonic landscape change shaped an extraordinary species radiation across a world\u2019s extreme elevational gradient"],"prefix":"10.1038","volume":"7","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3531-0821","authenticated-orcid":false,"given":"Adri\u00e1n","family":"Villastrigo","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7843-8438","authenticated-orcid":false,"given":"Steven J. B.","family":"Cooper","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Barbara","family":"Langille","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Erinn P.","family":"Fagan-Jeffries","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8998-9323","authenticated-orcid":false,"given":"William F.","family":"Humphreys","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lars","family":"Hendrich","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Balke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,11,13]]},"reference":[{"key":"7181_CR1","unstructured":"de Carbonni\u00e8res, L. R. Observations faites dans les Pyr\u00e9n\u00e9es, pour servir de suite \u00e0 des observations sur les Alpes, ins\u00e9r\u00e9es dans une traduction des Lettres de W Coxe, sur la Suisse. (Belin, 1789)."},{"key":"7181_CR2","unstructured":"Humboldt, A. \u201cvon.\u201d Voyage de Humboldt et Bonpland: Essai Sur La G\u00e9ographie Des Plantes, Accompagn\u00e9 D\u2019Un Tableau Physique Des R\u00e9gions \u00c9quinoxiales : Fond\u00e9 sur des mesures ex\u00e9cut\u00e9es, depuis le dixi\u00e8me degr\u00e9 de latitude bor\u00e9ale jusqu\u2019au dixi\u00e8me degr\u00e9 de latitude australe, pendant les ann\u00e9es 1799, 1800, 1801, 1802 et 1803 \/ Par Al. De Humboldt Et A. Bonpland; R\u00e9dig\u00e9 Par Alexandre De Humboldt. (Schoell, 1807)."},{"key":"7181_CR3","doi-asserted-by":"publisher","first-page":"12889","DOI":"10.1073\/pnas.1904585116","volume":"116","author":"P Moret","year":"2019","unstructured":"Moret, P., Muriel, P., Jaramillo, R. & Dangles, O. Humboldt\u2019s Tableau Physique revisited. Proc. Natl Acad. Sci. USA 116, 12889\u201312894 (2019).","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"7181_CR4","doi-asserted-by":"publisher","first-page":"337","DOI":"10.2307\/3817","volume":"46","author":"TRE Southwood","year":"1977","unstructured":"Southwood, T. R. E. Habitat, the templet for ecological strategies? J. Anim. Ecol. 46, 337\u2013365 (1977).","journal-title":"J. Anim. Ecol."},{"key":"7181_CR5","doi-asserted-by":"publisher","first-page":"3","DOI":"10.2307\/3565974","volume":"52","author":"TRE Southwood","year":"1988","unstructured":"Southwood, T. R. E. Tactics, strategies and templets. Oikos 52, 3\u201318 (1988).","journal-title":"Oikos"},{"key":"7181_CR6","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1111\/ele.12062","volume":"16","author":"FL Condamine","year":"2013","unstructured":"Condamine, F. L., Rolland, J. & Morlon, H. Macroevolutionary perspectives to environmental change. Ecol. Lett. 16, 72\u201385 (2013).","journal-title":"Ecol. Lett."},{"key":"7181_CR7","doi-asserted-by":"crossref","unstructured":"Simpson, G. G. The Major Features of Evolution. (Columbia University Press, 1953).","DOI":"10.7312\/simp93764"},{"key":"7181_CR8","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1038\/387070a0","volume":"387","author":"JB Losos","year":"1997","unstructured":"Losos, J. B., Warheitt, K. I. & Schoener, T. W. Adaptive differentiation following experimental island colonization in Anolis lizards. Nature 387, 70\u201373 (1997).","journal-title":"Nature"},{"key":"7181_CR9","doi-asserted-by":"publisher","first-page":"103704","DOI":"10.1016\/j.gloplacha.2021.103704","volume":"208","author":"LM Boschman","year":"2022","unstructured":"Boschman, L. M. & Condamine, F. L. Mountain radiations are not only rapid and recent: Ancient diversification of South American frog and lizard families related to Paleogene Andean orogeny and Cenozoic climate variations. Glob. Planet Change 208, 103704 (2022).","journal-title":"Glob. Planet Change"},{"key":"7181_CR10","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1016\/j.tree.2016.12.010","volume":"32","author":"C Badgley","year":"2017","unstructured":"Badgley, C. et al. Biodiversity and topographic complexity: modern and geohistorical perspectives. Trends Ecol. Evol. 32, 211\u2013226 (2017).","journal-title":"Trends Ecol. Evol."},{"key":"7181_CR11","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1111\/jbi.13731","volume":"47","author":"A Perrigo","year":"2020","unstructured":"Perrigo, A., Hoorn, C. & Antonelli, A. Why mountains matter for biodiversity. J. Biogeogr. 47, 315\u2013325 (2020).","journal-title":"J. Biogeogr."},{"key":"7181_CR12","doi-asserted-by":"publisher","first-page":"550","DOI":"10.1111\/cla.12368","volume":"35","author":"M Heads","year":"2019","unstructured":"Heads, M. Passive uplift of plant and animal populations during mountain-building. Cladistics 35, 550\u2013572 (2019).","journal-title":"Cladistics"},{"key":"7181_CR13","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1146\/annurev-ecolsys-102710-145001","volume":"42","author":"DJ Lohman","year":"2011","unstructured":"Lohman, D. J. et al. Biogeography of the Indo-Australian archipelago. Annu. Rev. Ecol. Evol. Syst. 42, 205\u2013226 (2011).","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"key":"7181_CR14","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1186\/s12862-021-01764-2","volume":"21","author":"EFA Toussaint","year":"2021","unstructured":"Toussaint, E. F. A. et al. New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipeline. BMC Ecol. Evol. 21, 51 (2021).","journal-title":"BMC Ecol. Evol."},{"key":"7181_CR15","doi-asserted-by":"publisher","first-page":"3293","DOI":"10.1098\/rstb.2008.0119","volume":"363","author":"VE Neall","year":"2008","unstructured":"Neall, V. E. & Trewick, S. A. The age and origin of the Pacific islands: a geological overview. Philos. Trans. R. Soc. Lond. B Biol. Sci. 363, 3293\u20133308 (2008).","journal-title":"Philos. Trans. R. Soc. Lond. B Biol. Sci."},{"key":"7181_CR16","doi-asserted-by":"publisher","first-page":"4215","DOI":"10.1016\/j.cub.2022.08.021","volume":"32","author":"E Roycroft","year":"2022","unstructured":"Roycroft, E. et al. New Guinea uplift opens ecological opportunity across a continent. Curr. Biol. 32, 4215\u20134224.e3 (2022).","journal-title":"Curr. Biol."},{"key":"7181_CR17","doi-asserted-by":"crossref","unstructured":"Lambers, H. On the Ecology of Australia\u2019s Arid Zone. 388 (Springer, 2018).","DOI":"10.1007\/978-3-319-93943-8"},{"key":"7181_CR18","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1146\/annurev-earth-040809-152540","volume":"40","author":"SL Baldwin","year":"2012","unstructured":"Baldwin, S. L., Fitzgerald, P. G. & Webb, L. E. Tectonics of the New Guinea region. Annu. Rev. Earth Planet Sci. 40, 495\u2013520 (2012).","journal-title":"Annu. Rev. Earth Planet Sci."},{"key":"7181_CR19","doi-asserted-by":"crossref","unstructured":"Cloos, M. et al. Collisional Delamination in New Guinea: the Geotectonics of Subducting Slab Breakoff. 400. (Geological Society of America, 2005).","DOI":"10.1130\/2005.2400"},{"key":"7181_CR20","doi-asserted-by":"crossref","unstructured":"Toussaint, E. F. A. et al. The towering orogeny of New Guinea as a trigger for arthropod megadiversity. Nat. Commun. 5, 4001 (2014).","DOI":"10.1038\/ncomms5001"},{"key":"7181_CR21","doi-asserted-by":"publisher","first-page":"1031","DOI":"10.1002\/ece3.517","volume":"3","author":"EFA Toussaint","year":"2013","unstructured":"Toussaint, E. F. A., Sagata, K., Surbakti, S., Hendrich, L. & Balke, M. Australasian sky islands act as a diversity pump facilitating peripheral speciation and complex reversal from narrow endemic to widespread ecological supertramp. Ecol. Evol. 3, 1031\u20131049 (2013).","journal-title":"Ecol. Evol."},{"key":"7181_CR22","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1038\/s41586-020-2549-5","volume":"584","author":"R C\u00e1mara-Leret","year":"2020","unstructured":"C\u00e1mara-Leret, R. et al. New Guinea has the world\u2019s richest island flora. Nature 584, 579\u2013583 (2020).","journal-title":"Nature"},{"key":"7181_CR23","doi-asserted-by":"publisher","first-page":"1133","DOI":"10.1016\/j.marpetgeo.2017.07.016","volume":"86","author":"DP Gold","year":"2017","unstructured":"Gold, D. P., White, L. T., Gunawan, I. & BouDagher-Fadel, M. K. Relative sea-level change in western New Guinea recorded by regional biostratigraphic data. Mar. Pet. Geol. 86, 1133\u20131158 (2017).","journal-title":"Mar. Pet. Geol."},{"key":"7181_CR24","doi-asserted-by":"crossref","unstructured":"Letsch, H. et al. Beetle evolution illuminates the geological history of the World\u2019s most diverse tropical archipelago. Ecography (Cop.) 2023, e06898 (2023).","DOI":"10.1111\/ecog.06898"},{"key":"7181_CR25","unstructured":"Harrington, L et al. Tectonic, geodynamic and surface process driving forces of Australia\u2019s paleogeography since the Jurassic. in Petroleum Exploration Society of Australia Symposium (2019)."},{"key":"7181_CR26","doi-asserted-by":"publisher","first-page":"1999","DOI":"10.1073\/pnas.1520188113","volume":"113","author":"JMK Sniderman","year":"2016","unstructured":"Sniderman, J. M. K. et al. Pliocene reversal of late Neogene aridification. Proc. Natl Acad. Sci. USA 113, 1999\u20132004 (2016).","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"7181_CR27","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1071\/IS07016","volume":"22","author":"WF Humphreys","year":"2008","unstructured":"Humphreys, W. F. Rising from Down Under: developments in subterranean biodiversity in Australia from a groundwater fauna perspective. Invertebr. Syst. 22, 85 (2008).","journal-title":"Invertebr. Syst."},{"key":"7181_CR28","doi-asserted-by":"crossref","unstructured":"Mani, M. S. Other Tropical Mountains. in Ecology and Biogeography of High Altitude Insects (ed Mani, M. S.) 176\u2013195 (Springer Netherlands, Dordrecht, 1968).","DOI":"10.1007\/978-94-017-1339-9_8"},{"key":"7181_CR29","doi-asserted-by":"publisher","first-page":"e19479","DOI":"10.1371\/journal.pone.0019479","volume":"6","author":"K Deiner","year":"2011","unstructured":"Deiner, K., Lemmon, A. R., Mack, A. L., Fleischer, R. C. & Dumbacher, J. P. A Passerine Bird\u2019s evolution corroborates the geologic history of the island of New Guinea. PLoS ONE 6, e19479 (2011).","journal-title":"PLoS ONE"},{"key":"7181_CR30","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1016\/j.ympev.2018.05.030","volume":"127","author":"MDB Eldridge","year":"2018","unstructured":"Eldridge, M. D. B. et al. Phylogenetic analysis of the tree-kangaroos (Dendrolagus) reveals multiple divergent lineages within New Guinea. Mol. Phylogenet. Evol. 127, 589\u2013599 (2018).","journal-title":"Mol. Phylogenet. Evol."},{"key":"7181_CR31","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1007\/s10914-010-9129-7","volume":"17","author":"RW Meredith","year":"2010","unstructured":"Meredith, R. W., Mendoza, M. A., Roberts, K. K., Westerman, M. & Springer, M. S. A phylogeny and timescale for the evolution of Pseudocheiridae (Marsupialia: Diprotodontia) in Australia and New Guinea. J. Mamm. Evol. 17, 75\u201399 (2010).","journal-title":"J. Mamm. Evol."},{"key":"7181_CR32","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1016\/j.ympev.2012.12.019","volume":"67","author":"PJ Unmack","year":"2013","unstructured":"Unmack, P. J., Allen, G. R. & Johnson, J. B. Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea. Mol. Phylogenet. Evol. 67, 15\u201327 (2013).","journal-title":"Mol. Phylogenet. Evol."},{"key":"7181_CR33","doi-asserted-by":"publisher","first-page":"413","DOI":"10.11646\/zootaxa.5319.3.7","volume":"5319","author":"S Surbakti","year":"2023","unstructured":"Surbakti, S., Balke, M. & Hendrich, L. Limbodessus moni sp. nov., a new high altitudinal diving beetle from the Grasberg in West Papua, Indonesia (Coleoptera: Dytiscidae, Bidessini). Zootaxa 5319, 413\u2013420 (2023).","journal-title":"Zootaxa"},{"key":"7181_CR34","doi-asserted-by":"crossref","unstructured":"Austin, A. et al. The unique Australian subterranean dytiscidae: diversity, biology, and evolution. in Ecology, Systematics, and the Natural History of Predaceous Diving Beetles (Coleoptera: Dytiscidae) (ed Yee, D. A.) 401\u2013426 (Springer, 2023).","DOI":"10.1007\/978-3-031-01245-7_9"},{"key":"7181_CR35","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1111\/j.1365-3113.2004.00229.x","volume":"29","author":"M Balke","year":"2004","unstructured":"Balke, M., Watts, C. H. S., Cooper, S. J. B., Humphreys, W. F. & Vogler, A. P. A highly modified stygobiont diving beetle of the genus Copelatus (Coleoptera, Dytiscidae): taxonomy and cladistic analysis based on mitochondrial DNA sequences. Syst. Entomol. 29, 59\u201367 (2004).","journal-title":"Syst. Entomol."},{"key":"7181_CR36","first-page":"19","volume":"20","author":"SB Peck","year":"1993","unstructured":"Peck, S. B. & Finston, T. L. Galapagos islands troglobites: the questions of tropical troglobites, parapatric distributions with eyed-sister-species, and their origin by parapatric speciation. Mem. Biospeol. 20, 19\u201337 (1993).","journal-title":"Mem. Biospeol."},{"key":"7181_CR37","first-page":"2819","volume":"57","author":"R Leys","year":"2003","unstructured":"Leys, R., Watts, C. H. S., Cooper, S. J. B. & Humphreys, W. F. Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia. Evolution 57, 2819\u20132834 (2003).","journal-title":"Evolution"},{"key":"7181_CR38","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1111\/j.1440-6055.2004.00415.x","volume":"43","author":"M Balke","year":"2004","unstructured":"Balke, M. & Ribera, I. Jumping across Wallace\u2019s line: Allodessus Guignot and Limbodessus Guignot revisited (Coleoptera: Dytiscidae, Bidessini) based on molecular-phylogenetic and morphological data. Aust. J. Entomol. 43, 114\u2013128 (2004).","journal-title":"Aust. J. Entomol."},{"key":"7181_CR39","unstructured":"Frakes, L. A., McGowran, B. & Bowler, J. M. Evolution of Australian Environments. in Fauna of Australia. General Articles (eds Dyne, G. R. & Walton, D. W.) 1\u201317 (Australian Government Publishing Service, 1987)."},{"key":"7181_CR40","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1016\/j.epsl.2016.02.025","volume":"441","author":"R M\u00fcller","year":"2016","unstructured":"M\u00fcller, R. et al. Formation of Australian continental margin highlands driven by plate\u2013mantle interaction. Earth Planet Sci. Lett. 441, 60\u201370 (2016).","journal-title":"Earth Planet Sci. Lett."},{"key":"7181_CR41","doi-asserted-by":"publisher","first-page":"4398","DOI":"10.1111\/j.1365-294X.2008.03899.x","volume":"17","author":"M Byrne","year":"2008","unstructured":"Byrne, M. et al. Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota. Mol. Ecol. 17, 4398\u20134417 (2008).","journal-title":"Mol. Ecol."},{"key":"7181_CR42","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1111\/j.2041-210X.2011.00169.x","volume":"3","author":"LJ Revell","year":"2012","unstructured":"Revell, L. J. phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3, 217\u2013223 (2012).","journal-title":"Methods Ecol. Evol."},{"key":"7181_CR43","doi-asserted-by":"crossref","unstructured":"Cooper, S. J. B. et al. Phylogenies reveal speciation dynamics: case studies from groundwater. in Groundwater Ecology and Evolution (eds Malard, F., Griebler, C. & Retaux, S.) 165\u2013183 (Elsevier, 2023).","DOI":"10.1016\/B978-0-12-819119-4.00020-2"},{"key":"7181_CR44","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1016\/0031-0182(94)90251-8","volume":"108","author":"BP Flower","year":"1994","unstructured":"Flower, B. P. & Kennett, J. P. The middle Miocene climatic transition: East Antarctic ice sheet development, deep ocean circulation and global carbon cycling. Palaeogeogr. Palaeoclimatol. Palaeoecol. 108, 537\u2013555 (1994).","journal-title":"Palaeogeogr. Palaeoclimatol. Palaeoecol."},{"key":"7181_CR45","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1016\/j.jaridenv.2006.01.009","volume":"66","author":"HA Martin","year":"2006","unstructured":"Martin, H. A. Cenozoic climatic change and the development of the arid vegetation in Australia. J. Arid Environ. 66, 533\u2013563 (2006).","journal-title":"J. Arid Environ."},{"key":"7181_CR46","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1086\/512753","volume":"115","author":"GJ Retallack","year":"2007","unstructured":"Retallack, G. J. Cenozoic paleoclimate on land in North America. J. Geol. 115, 271\u2013294 (2007).","journal-title":"J. Geol."},{"key":"7181_CR47","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1111\/zsc.12255","volume":"47","author":"A Villastrigo","year":"2018","unstructured":"Villastrigo, A., Fery, H., Manuel, M., Mill\u00e1n, A. & Ribera, I. Evolution of salinity tolerance in the diving beetle tribe Hygrotini (Coleoptera, Dytiscidae). Zool. Scr. 47, 63\u201371 (2018).","journal-title":"Zool. Scr."},{"key":"7181_CR48","doi-asserted-by":"crossref","unstructured":"Barr, T. C., Jr. Cave ecology and the evolution of troglobites. in Evolutionary Biology 35\u2013102 (Springer US, Boston, MA, 1968).","DOI":"10.1007\/978-1-4684-8094-8_2"},{"key":"7181_CR49","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1146\/annurev.es.16.110185.001525","volume":"16","author":"TC Barr Jr","year":"1985","unstructured":"Barr, T. C. Jr & H olsinger, J. R. Speciation in cave faunas. Annu. Rev. Ecol. Syst. 16, 313\u2013337 (1985).","journal-title":"Annu. Rev. Ecol. Syst."},{"key":"7181_CR50","doi-asserted-by":"crossref","unstructured":"Leijs, R. et al. Evolution of blind beetles in isolated aquifers: a test of alternative modes of speciation. PLoS ONE 7, 34260 (2012).","DOI":"10.1371\/journal.pone.0034260"},{"key":"7181_CR51","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1086\/670589","volume":"182","author":"R Vergnon","year":"2013","unstructured":"Vergnon, R., Leijs, R., van Nes, E. H. & Scheffer, M. Repeated parallel evolution reveals limiting similarity in subterranean diving beetles. Am. Nat. 182, 67\u201375 (2013).","journal-title":"Am. Nat."},{"key":"7181_CR52","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1071\/IT01039","volume":"16","author":"SJB Cooper","year":"2002","unstructured":"Cooper, S. J. B., Hinze, S., Leys, R., Watts, C. H. S. & Humphreys, W. F. Islands under the desert: molecular systematics and evolutionary origins of stygobiontic water beetles (Coleoptera: Dytiscidae) from central Western Australia. Invertebr. Syst. 16, 589\u2013598 (2002).","journal-title":"Invertebr. Syst."},{"key":"7181_CR53","first-page":"123","volume":"130","author":"CHS Watts","year":"2006","unstructured":"Watts, C. H. S. & Humphreys, W. F. Twenty-six new Dytiscidae (Coleoptera) of the genera Limbodessus Guignot and Nirripirti Watts & Humphreys, from underground waters in Australia. Trans. R. Soc. S. Aust. 130, 123\u2013185 (2006).","journal-title":"Trans. R. Soc. S. Aust."},{"key":"7181_CR54","doi-asserted-by":"crossref","unstructured":"Culver, D. C. & Pipan, T. The Biology of Caves and Other Subterranean Habitats the Biology of Caves and Other Subterranean Habitats. (Oxford University Press, London, England, 2019).","DOI":"10.1093\/oso\/9780198820765.001.0001"},{"key":"7181_CR55","doi-asserted-by":"publisher","first-page":"280","DOI":"10.1093\/biolinnean\/blad142","volume":"142","author":"Y Zhao","year":"2024","unstructured":"Zhao, Y. et al. Evolutionary transition from surface to subterranean living in Australian water beetles (Coleoptera, Dytiscidae) through adaptive and relaxed selection. Biol. J. Linn. Soc. 142, 280\u2013293 (2024).","journal-title":"Biol. J. Linn. Soc."},{"key":"7181_CR56","unstructured":"Miller, K. B. & Bergsten, J. Diving Beetles of the World: Systematics and Biology of the Dytiscidae. 320 (Johns Hopkins University Press, Baltimore, 2016)."},{"key":"7181_CR57","doi-asserted-by":"publisher","first-page":"1327","DOI":"10.1093\/molbev\/msy065","volume":"35","author":"J Zhang","year":"2018","unstructured":"Zhang, J. Neutral theory and phenotypic evolution. Mol. Biol. Evol. 35, 1327\u20131331 (2018).","journal-title":"Mol. Biol. Evol."},{"key":"7181_CR58","unstructured":"Cooper, S. et al. Phylogenies reveal speciation dynamics: case studies from groundwater. in Groundwater Ecology and Evolution (Second Edition) (eds Malard, F., Griebler, C. & R\u00e9taux, S.) 165\u2013183 (Academic Press, San Diego, 2023)."},{"key":"7181_CR59","doi-asserted-by":"publisher","first-page":"732","DOI":"10.1111\/j.1558-5646.2012.01822.x","volume":"67","author":"ML Niemiller","year":"2013","unstructured":"Niemiller, M. L., Fitzpatrick, B. M., Shah, P., Schmitz, L. & Near, T. J. Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae). Evolution 67, 732\u2013748 (2013).","journal-title":"Evolution"},{"key":"7181_CR60","doi-asserted-by":"publisher","first-page":"107522","DOI":"10.1016\/j.ympev.2022.107522","volume":"173","author":"BL Langille","year":"2022","unstructured":"Langille, B. L. et al. Parallel decay of vision genes in subterranean water beetles. Mol. Phylogenet. Evol. 173, 107522 (2022).","journal-title":"Mol. Phylogenet. Evol."},{"key":"7181_CR61","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1111\/evo.14135","volume":"75","author":"BL Langille","year":"2021","unstructured":"Langille, B. L. et al. Evidence for speciation underground in diving beetles (Dytiscidae) from a subterranean archipelago. Evolution 75, 166\u2013175 (2021).","journal-title":"Evolution"},{"key":"7181_CR62","doi-asserted-by":"publisher","first-page":"640","DOI":"10.1016\/j.tree.2003.09.006","volume":"18","author":"JR True","year":"2003","unstructured":"True, J. R. Insect melanism: the molecules matter. Trends Ecol. Evol. 18, 640\u2013647 (2003).","journal-title":"Trends Ecol. Evol."},{"key":"7181_CR63","doi-asserted-by":"publisher","first-page":"e80823","DOI":"10.1371\/journal.pone.0080823","volume":"8","author":"H Biland\u017eija","year":"2013","unstructured":"Biland\u017eija, H., Ma, L., Parkhurst, A. & Jeffery, W. R. A potential benefit of albinism in Astyanax cavefish: downregulation of the oca2 gene increases tyrosine and catecholamine levels as an alternative to melanin synthesis. PLoS ONE 8, e80823 (2013).","journal-title":"PLoS ONE"},{"key":"7181_CR64","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1242\/jeb.196659","volume":"222","author":"KK Jones","year":"2019","unstructured":"Jones, K. K., Cooper, S. J. B. & Seymour, R. S. Cutaneous respiration by diving beetles from underground aquifers of Western Australia (Coleoptera: Dytiscidae). J. Exp. Biol. 222, 1\u201313 (2019).","journal-title":"J. Exp. Biol."},{"key":"7181_CR65","doi-asserted-by":"publisher","first-page":"23","DOI":"10.3897\/subtbiol.19.9513","volume":"19","author":"CHS Watts","year":"2016","unstructured":"Watts, C. H. S., Hendrich, L. & Balke, M. A new interstitial species of diving beetle from tropical northern Australia provides a scenario for the transition of epigean to stygobitic life (Coleoptera, Dytiscidae, Copelatinae). Subterr. Biol. 19, 23\u201329 (2016).","journal-title":"Subterr. Biol."},{"key":"7181_CR66","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1111\/j.1440-6055.1994.tb01222.x","volume":"33","author":"DJ Larson","year":"1994","unstructured":"Larson, D. J. Boongurrus rivulus, a new genus and species of water beetle (Coleoptera: Dytiscidae: Bidessini) from northern Queensland, Australia. Aust. J. Entomol. 33, 217\u2013221 (1994).","journal-title":"Aust. J. Entomol."},{"key":"7181_CR67","first-page":"62","volume":"133","author":"CHS Watts","year":"2009","unstructured":"Watts, C. H. S. & Humphreys, W. F. Fourteen new dytiscidae (Coleoptera) of the genera Limbodessus Guignot, Paroster Sharp, and Exocelina Broun from underground waters in Australia. Trans. R. Soc. S. Aust. 133, 62\u2013107 (2009).","journal-title":"Trans. R. Soc. S. Aust."},{"key":"7181_CR68","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1080\/03036758.2022.2130367","volume":"54","author":"TR Buckley","year":"2024","unstructured":"Buckley, T. R., Hoare, R. J. B. & Leschen, R. A. B. Key questions on the evolution and biogeography of New Zealand alpine insects. J. R. Soc. N. Z. 54, 30\u201354 (2024).","journal-title":"J. R. Soc. N. Z."},{"key":"7181_CR69","unstructured":"Williams, R. J. et al. Alpine ecosystems. in Biodiversity and Environmental Change: Monitoring, Challenges and Directions (eds Lindenmayer, D., Burns, E., Thurgate, N. & Lowe, A.) 167\u2013212 (CSIRO Publishing Melbourne, 2014)."},{"key":"7181_CR70","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1306\/08300403073","volume":"89","author":"AQ van Ufford","year":"2005","unstructured":"van Ufford, A. Q. & Cloos, M. Cenozoic tectonics of New Guinea. AAPG Bull. 89, 119\u2013140 (2005).","journal-title":"AAPG Bull."},{"key":"7181_CR71","first-page":"383","volume":"78","author":"JR De","year":"2004","unstructured":"De, J. R. Phylogeny and biogeography of the genus Taractrocera Butler, 1870 (Lepidoptera: Hesperiidae), an example of Southeast Asian-Australian interchange. Zool. Meded. 78, 383\u2013415 (2004).","journal-title":"Zool. Meded."},{"key":"7181_CR72","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1111\/j.1463-6409.2012.00567.x","volume":"42","author":"E Quintero","year":"2013","unstructured":"Quintero, E., Ribas, C. C. & Cracraft, J. The Andean Hapalopsittaca parrots (Psittacidae, Aves): an example of montane\u2010tropical lowland vicariance: Biogeography of Hapalopsittaca parrots. Zool. Scr. 42, 28\u201343 (2013).","journal-title":"Zool. Scr."},{"key":"7181_CR73","doi-asserted-by":"publisher","first-page":"e17232","DOI":"10.7717\/peerj.17232","volume":"12","author":"D Almeida-Silva","year":"2024","unstructured":"Almeida-Silva, D., Servino, L. M., Pontes-Nogueira, M. & Sawaya, R. J. Marine introgressions and Andean uplift have driven diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae). PeerJ 12, e17232 (2024).","journal-title":"PeerJ"},{"key":"7181_CR74","first-page":"194","volume":"279","author":"CD Cadena","year":"2012","unstructured":"Cadena, C. D. et al. Latitude, elevational climatic zonation and speciation in New World vertebrates. Proc. Biol. Sci. 279, 194\u2013201 (2012).","journal-title":"Proc. Biol. Sci."},{"key":"7181_CR75","first-page":"2995","volume":"274","author":"KH Kozak","year":"2007","unstructured":"Kozak, K. H. & Wiens, J. J. Climatic zonation drives latitudinal variation in speciation mechanisms. Proc. Biol. Sci. 274, 2995\u20133003 (2007).","journal-title":"Proc. Biol. Sci."},{"key":"7181_CR76","doi-asserted-by":"publisher","first-page":"e7096","DOI":"10.3897\/BDJ.3.e7096","volume":"3","author":"M Balke","year":"2015","unstructured":"Balke, M. et al. Two new species of Limbodessus diving beetles from New Guinea - short verbal descriptions flanked by online content (digital photography, \u03bcCT scans, drawings and DNA sequence data). Biodivers. Data J. 3, e7096 (2015).","journal-title":"Biodivers. Data J."},{"key":"7181_CR77","doi-asserted-by":"publisher","first-page":"389","DOI":"10.2307\/1943013","volume":"60","author":"DA Roff","year":"1990","unstructured":"Roff, D. A. The evolution of flightlessness in insects. Ecol. Monogr. 60, 389\u2013421 (1990).","journal-title":"Ecol. Monogr."},{"key":"7181_CR78","first-page":"129","volume":"142","author":"PJ Darlington","year":"1971","unstructured":"Darlington, P. J. The carabid beetles of New Guinea. Part IV. General considerations; analysis and history of fauna; taxonomic supplement. Bull. Mus. Comp. Zool. 142, 129\u2013339 (1971).","journal-title":"Bull. Mus. Comp. Zool."},{"key":"7181_CR79","doi-asserted-by":"publisher","first-page":"512","DOI":"10.1016\/j.tree.2020.01.012","volume":"35","author":"JM Waters","year":"2020","unstructured":"Waters, J. M., Emerson, B. C., Arribas, P. & McCulloch, G. A. Dispersal reduction: causes, genomic mechanisms, and evolutionary consequences. Trends Ecol. Evol. 35, 512\u2013522 (2020).","journal-title":"Trends Ecol. Evol."},{"key":"7181_CR80","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1016\/j.tree.2011.08.009","volume":"27","author":"RG Gillespie","year":"2012","unstructured":"Gillespie, R. G. et al. Long-distance dispersal: a framework for hypothesis testing. Trends Ecol. Evol. 27, 47\u201356 (2012).","journal-title":"Trends Ecol. Evol."},{"key":"7181_CR81","first-page":"1303","volume":"47","author":"H Fery","year":"2015","unstructured":"Fery, H. & Challet, G. Hygrotus (Coelambus) nubilus (LeConte, 1855) on Mauna Kea (Hawaii) \u2013 first record of the genus from the Pacific zoogeographical region (Coleoptera: Dytiscidae). Linz Biol. Beitr. 47, 1303\u20131309 (2015).","journal-title":"Linz Biol. Beitr."},{"key":"7181_CR82","doi-asserted-by":"publisher","first-page":"786","DOI":"10.1093\/bioinformatics\/btv646","volume":"32","author":"BC Faircloth","year":"2016","unstructured":"Faircloth, B. C. PHYLUCE is a software package for the analysis of conserved genomic loci. Bioinformatics 32, 786\u2013788 (2016).","journal-title":"Bioinformatics"},{"key":"7181_CR83","doi-asserted-by":"publisher","first-page":"6933","DOI":"10.1002\/ece3.5260","volume":"9","author":"GT Gustafson","year":"2019","unstructured":"Gustafson, G. T. et al. Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization. Ecol. Evol. 9, 6933\u20136948 (2019).","journal-title":"Ecol. Evol."},{"key":"7181_CR84","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"TL Madden","year":"2009","unstructured":"Madden, T. L. et al. BLAST+: architecture and applications. BMC Bioinforma. 10, 421 (2009).","journal-title":"BMC Bioinforma."},{"key":"7181_CR85","doi-asserted-by":"publisher","first-page":"2157","DOI":"10.1093\/molbev\/mss084","volume":"29","author":"G Baele","year":"2012","unstructured":"Baele, G. et al. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol. Biol. Evol. 29, 2157\u20132167 (2012).","journal-title":"Mol. Biol. Evol."},{"key":"7181_CR86","doi-asserted-by":"publisher","first-page":"1970","DOI":"10.1093\/bioinformatics\/btt340","volume":"29","author":"G Baele","year":"2013","unstructured":"Baele, G. & Lemey, P. Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency. Bioinformatics 29, 1970\u20131979 (2013).","journal-title":"Bioinformatics"},{"key":"7181_CR87","doi-asserted-by":"crossref","unstructured":"Matzke, N. J. Probabilistic Historical Biogeography: New Models for Founder-Event Speciation, Imperfect Detection, and Fossils Allow Improved Accuracy and Model-Testing. (University of California, 2013).","DOI":"10.21425\/F5FBG19694"},{"key":"7181_CR88","doi-asserted-by":"publisher","first-page":"100019","DOI":"10.1016\/j.cris.2021.100019","volume":"1","author":"KK Jones","year":"2021","unstructured":"Jones, K. K. et al. The critical thermal maximum of diving beetles (Coleoptera: Dytiscidae): a comparison of subterranean and surface-dwelling species. Curr. Res. Insect Sci. 1, 100019 (2021).","journal-title":"Curr. Res. Insect Sci."},{"key":"7181_CR89","doi-asserted-by":"publisher","first-page":"1647","DOI":"10.1093\/bioinformatics\/bts199","volume":"28","author":"M Kearse","year":"2012","unstructured":"Kearse, M. et al. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647\u20131649 (2012).","journal-title":"Bioinformatics"},{"key":"7181_CR90","unstructured":"R Core Team. R: A Language and Environment for Statistical Computing. https:\/\/www.R-project.org\/ (2023)."}],"container-title":["Communications Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.nature.com\/articles\/s42003-024-07181-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-024-07181-7","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-024-07181-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,13]],"date-time":"2024-11-13T15:08:18Z","timestamp":1731510498000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/s42003-024-07181-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,11,13]]},"references-count":90,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["7181"],"URL":"https:\/\/doi.org\/10.1038\/s42003-024-07181-7","relation":{},"ISSN":["2399-3642"],"issn-type":[{"value":"2399-3642","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,11,13]]},"assertion":[{"value":"13 February 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"31 October 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 November 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interest.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"1500"}}