{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T01:38:58Z","timestamp":1792633138168,"version":"4.5.0"},"reference-count":91,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,7,1]],"date-time":"2026-07-01T00:00:00Z","timestamp":1782864000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:00:00Z","timestamp":1792627200000},"content-version":"vor","delay-in-days":113,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Commun Biol"],"DOI":"10.1038\/s42003-026-10574-5","type":"journal-article","created":{"date-parts":[[2026,7,1]],"date-time":"2026-07-01T17:27:33Z","timestamp":1782926853000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Salt priming coordinates transcriptional and epigenetic states for enhanced salt tolerance in mung bean (Vigna radiata)"],"prefix":"10.1038","volume":"9","author":[{"given":"Zhi-Wei","family":"Wang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hui-Tong","family":"Sang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Song","family":"Hou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guan","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ru-Mei","family":"Tian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yong-Yi","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kun","family":"Xie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Longxin","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Na-Na","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kai-Hua","family":"Jia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,1]]},"reference":[{"key":"10574_CR1","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1016\/j.cosust.2020.10.015","volume":"50","author":"D Eswar","year":"2021","unstructured":"Eswar, D., Karuppusamy, R. & Chellamuthu, S. Drivers of soil salinity and their correlation with climate change. Curr. Opin. Environ. Sustain. 50, 310\u2013318 (2021).","journal-title":"Curr. Opin. Environ. Sustain."},{"key":"10574_CR2","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1038\/s41561-022-00931-4","volume":"15","author":"S Perri","year":"2022","unstructured":"Perri, S., Molini, A., Hedin, L. O. & Porporato, A. Contrasting effects of aridity and seasonality on global salinization. Nat. Geosci. 15, 375\u2013381 (2022).","journal-title":"Nat. Geosci."},{"key":"10574_CR3","doi-asserted-by":"publisher","first-page":"978","DOI":"10.1093\/erae\/jbad006","volume":"50","author":"M Malpede","year":"2023","unstructured":"Malpede, M. & Percoco, M. Aridification, precipitations and crop productivity: evidence from the aridity index. Eur. Rev. Agric. Econ. 50, 978\u20131012 (2023).","journal-title":"Eur. Rev. Agric. Econ."},{"key":"10574_CR4","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-019-1952-2","volume":"19","author":"J-G Liu","year":"2019","unstructured":"Liu, J.-G. et al. Genome-wide transcriptional adaptation to salt stress in Populus. BMC Plant Biol. 19, 367 (2019).","journal-title":"BMC Plant Biol."},{"key":"10574_CR5","first-page":"15297","volume":"1","author":"W-S Yung","year":"2024","unstructured":"Yung, W.-S. et al. DNA hypomethylation is one of the epigenetic mechanisms involved in salt-stress priming in soybean seedlings. Plant, cell Environ. 1, 15297 (2024).","journal-title":"Plant, cell Environ."},{"key":"10574_CR6","doi-asserted-by":"publisher","first-page":"5269","DOI":"10.1093\/jxb\/eraa098","volume":"71","author":"I B\u00e4urle","year":"2020","unstructured":"B\u00e4urle, I. & Trindade, I. Chromatin regulation of somatic abiotic stress memory. J. Exp. Bot. 71, 5269\u20135279 (2020).","journal-title":"J. Exp. Bot."},{"key":"10574_CR7","doi-asserted-by":"publisher","first-page":"102007","DOI":"10.1016\/j.pbi.2021.102007","volume":"61","author":"V Oberkofler","year":"2021","unstructured":"Oberkofler, V., Pratx, L. & B\u00e4urle, I. Epigenetic regulation of abiotic stress memory: maintaining the good things while they last. Curr. Opin. Plant Biol. 61, 102007 (2021).","journal-title":"Curr. Opin. Plant Biol."},{"key":"10574_CR8","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1016\/j.tplants.2022.09.004","volume":"28","author":"P Gallusci","year":"2023","unstructured":"Gallusci, P. et al. Deep inside the epigenetic memories of stressed plants. Trends Plant Sci. 28, 142\u2013153 (2023).","journal-title":"Trends Plant Sci."},{"key":"10574_CR9","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-017-1263-6","volume":"18","author":"J L\u00e4mke","year":"2017","unstructured":"L\u00e4mke, J. & B\u00e4urle, I. Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants. Genome Biol. 18, 124 (2017).","journal-title":"Genome Biol."},{"key":"10574_CR10","doi-asserted-by":"publisher","first-page":"2437","DOI":"10.1007\/s11356-015-5445-z","volume":"23","author":"AK Shaw","year":"2016","unstructured":"Shaw, A. K. et al. -aminobutyric acid mediated drought stress alleviation in maize (Zea mays L.). Environ. Sci. Pollut. Res. 23, 2437\u20132453 (2016).","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10574_CR11","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-024-05434-5","volume":"24","author":"M Juraniec","year":"2024","unstructured":"Juraniec, M., Goormaghtigh, E., Posmyk, M. M. & Verbruggen, N. An ecotype-specific effect of osmopriming and melatonin during salt stress in Arabidopsis thaliana. BMC Plant Biol. 24, 707 (2024).","journal-title":"BMC Plant Biol."},{"key":"10574_CR12","doi-asserted-by":"publisher","first-page":"111954","DOI":"10.1016\/j.plantsci.2023.111954","volume":"340","author":"S Kashyap","year":"2024","unstructured":"Kashyap, S., Agarwala, N. & Sunkar, R. Understanding plant stress memory traits can provide a way for sustainable agriculture. Plant Sci. 340, 111954 (2024).","journal-title":"Plant Sci."},{"key":"10574_CR13","doi-asserted-by":"publisher","first-page":"699","DOI":"10.1016\/j.tplants.2021.11.015","volume":"27","author":"H Liu","year":"2022","unstructured":"Liu, H., Able, A. J. & Able, J. A. Priming crops for the future: rewiring stress memory. Trends Plant Sci. 27, 699\u2013716 (2022).","journal-title":"Trends Plant Sci."},{"key":"10574_CR14","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2013-14-6-r59","volume":"14","author":"E Sani","year":"2013","unstructured":"Sani, E., Herzyk, P., Perrella, G., Colot, V. & Amtmann, A. Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biol. 14, R59 (2013).","journal-title":"Genome Biol."},{"key":"10574_CR15","doi-asserted-by":"publisher","first-page":"E8335","DOI":"10.1073\/pnas.1610670114","volume":"113","author":"XJ Feng","year":"2016","unstructured":"Feng, X. J. et al. Light affects salt stress-induced transcriptional memory of P5CS1 in Arabidopsis. PNAS 113, E8335\u2013E8343 (2016).","journal-title":"PNAS"},{"key":"10574_CR16","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1038\/embor.2010.186","volume":"12","author":"M Jaskiewicz","year":"2011","unstructured":"Jaskiewicz, M., Conrath, U. & Peterh\u00e4nsel, C. Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep. 12, 50\u201355 (2011).","journal-title":"EMBO Rep."},{"key":"10574_CR17","doi-asserted-by":"publisher","first-page":"4213","DOI":"10.1016\/j.cell.2025.04.036","volume":"188","author":"X Song","year":"2025","unstructured":"Song, X. et al. Inheritance of acquired adaptive cold tolerance in rice through DNA methylation. Cell 188, 4213\u20134224.e4212 (2025).","journal-title":"Cell"},{"key":"10574_CR18","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1105\/tpc.108.062158","volume":"21","author":"GJM Beckers","year":"2009","unstructured":"Beckers, G. J. M. et al. Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell 21, 944\u2013953 (2009).","journal-title":"Plant Cell"},{"key":"10574_CR19","doi-asserted-by":"publisher","first-page":"810","DOI":"10.1016\/j.chom.2019.10.010","volume":"26","author":"B-Q Gong","year":"2019","unstructured":"Gong, B.-Q. et al. Cross-microbial protection via priming a conserved immune co-receptor through juxtamembrane phosphorylation in plants. Cell Host Microbe 26, 810\u2013822.e817 (2019).","journal-title":"Cell Host Microbe"},{"key":"10574_CR20","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1104\/pp.111.191841","volume":"159","author":"T Pick","year":"2012","unstructured":"Pick, T., Jaskiewicz, M., Peterh\u00e4nsel, C. & Conrath, U. Heat shock factor HsfB1 primes gene transcription and systemic acquired resistance in Arabidopsis. Plant Physiol. 159, 52\u201355 (2012).","journal-title":"Plant Physiol."},{"key":"10574_CR21","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-018-5367-5","volume":"19","author":"J-R Li","year":"2018","unstructured":"Li, J.-R., Liu, C.-C., Sun, C.-H. & Chen, Y.-T. Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells. BMC Genom. 19, 966 (2018).","journal-title":"BMC Genom."},{"key":"10574_CR22","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-019-6375-9","volume":"21","author":"Y Xu","year":"2020","unstructured":"Xu, Y. et al. Genetic regulatory networks for salt-alkali stress in Gossypium hirsutum with differing morphological characteristics. BMC Genom. 21, 15 (2020).","journal-title":"BMC Genom."},{"key":"10574_CR23","doi-asserted-by":"publisher","first-page":"116278","DOI":"10.1016\/j.indcrop.2023.116278","volume":"194","author":"Y Zhao","year":"2023","unstructured":"Zhao, Y. et al. Time-course transcriptomics analysis reveals key responses of populus to salt stress. Ind. Crops Prod. 194, 116278 (2023).","journal-title":"Ind. Crops Prod."},{"key":"10574_CR24","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1146\/annurev-arplant-050718-100309","volume":"71","author":"MA Bl\u00e1zquez","year":"2020","unstructured":"Bl\u00e1zquez, M. A., Nelson, D. C. & Weijers, D. Evolution of plant hormone response pathways. Annu. Rev. Plant Biol. 71, 327\u2013353 (2020).","journal-title":"Annu. Rev. Plant Biol."},{"key":"10574_CR25","doi-asserted-by":"publisher","first-page":"268","DOI":"10.3390\/antiox12020268","volume":"12","author":"M Khan","year":"2023","unstructured":"Khan, M. et al. The key roles of ROS and RNS as a signaling molecule in plant\u2013microbe interactions. Antioxidants 12, 268 (2023).","journal-title":"Antioxidants"},{"key":"10574_CR26","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-51036-y","volume":"15","author":"M Guo","year":"2024","unstructured":"Guo, M. et al. Loss of cold tolerance is conferred by absence of the WRKY34 promoter fragment during tomato evolution. Nat. Commun. 15, 6667 (2024).","journal-title":"Nat. Commun."},{"key":"10574_CR27","doi-asserted-by":"publisher","first-page":"617","DOI":"10.1111\/pbi.14210","volume":"22","author":"Y Song","year":"2024","unstructured":"Song, Y. et al. The chromatin remodeller MdRAD5B enhances drought tolerance by coupling MdLHP1-mediated H3K27me3 in apple. Plant Biotechnol. J. 22, 617\u2013634 (2024).","journal-title":"Plant Biotechnol. J."},{"key":"10574_CR28","doi-asserted-by":"publisher","first-page":"5619","DOI":"10.3390\/ijms24065619","volume":"24","author":"F Qiu","year":"2023","unstructured":"Qiu, F. et al. Integrated ATAC-seq and RNA-seq data analysis to reveal OsbZIP14 function in rice in response to heat stress. Int. J. Mol. Sci. 24, 5619 (2023).","journal-title":"Int. J. Mol. Sci."},{"key":"10574_CR29","doi-asserted-by":"publisher","DOI":"10.1111\/tpj.70081","volume":"121","author":"S Wen","year":"2025","unstructured":"Wen, S. et al. Comprehensive transcriptional regulatory networks in potato through chromatin accessibility and transcriptome under drought and salt stresses. Plant J. 121, e70081 (2025).","journal-title":"Plant J."},{"key":"10574_CR30","doi-asserted-by":"publisher","first-page":"595603","DOI":"10.3389\/fpls.2020.595603","volume":"11","author":"J Liu","year":"2020","unstructured":"Liu, J. & He, Z. Small DNA methylation, big player in plant abiotic stress responses and memory. Front. Plant Sci. 11, 595603 (2020).","journal-title":"Front. Plant Sci."},{"key":"10574_CR31","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-024-05425-6","volume":"24","author":"H Hoenicka","year":"2024","unstructured":"Hoenicka, H. et al. -Aminobutyric acid promotes stress tolerance, physiological adjustments, as well as broad epigenetic changes at DNA and RNA nucleobases in field elms (Ulmus minor). BMC Plant Biol. 24, 779 (2024).","journal-title":"BMC Plant Biol."},{"key":"10574_CR32","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1186\/s13072-020-00361-9","volume":"13","author":"S Feng","year":"2020","unstructured":"Feng, S., Zhong, Z., Wang, M. & Jacobsen, S. E. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenet. Chromatin 13, 42 (2020).","journal-title":"Epigenet. Chromatin"},{"key":"10574_CR33","doi-asserted-by":"publisher","first-page":"1455685","DOI":"10.3389\/fpls.2024.1455685","volume":"15","author":"M Muthusamy","year":"2024","unstructured":"Muthusamy, M., Pandian, S., Shin, E.-K., An, H.-K. & Sohn, S.-I. Unveiling the imprinted dance: how parental genomes orchestrate seed development and hybrid success. Front. Plant Sci. 15, 1455685 (2024).","journal-title":"Front. Plant Sci."},{"key":"10574_CR34","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1007\/s11756-022-01229-x","volume":"78","author":"T Chen","year":"2023","unstructured":"Chen, T. & Duan, W. DNA methylation changes were involved in inhibiting ethylene signaling and delaying senescence of tomato fruit under low temperature. Biologia 78, 415\u2013427 (2023).","journal-title":"Biologia"},{"key":"10574_CR35","doi-asserted-by":"publisher","first-page":"11622","DOI":"10.1002\/ece3.6795","volume":"10","author":"Y Geng","year":"2020","unstructured":"Geng, Y. et al. Increased epigenetic diversity and transient epigenetic memory in response to salinity stress in Thlaspi arvense. Ecol. Evol. 10, 11622\u201311630 (2020).","journal-title":"Ecol. Evol."},{"key":"10574_CR36","doi-asserted-by":"publisher","first-page":"6910","DOI":"10.3390\/ijms23136910","volume":"23","author":"M Sun","year":"2022","unstructured":"Sun, M., Yang, Z., Liu, L. & Duan, L. DNA methylation in plant responses and adaptation to abiotic stresses. Int. J. Mol. Sci. 23, 6910 (2022).","journal-title":"Int. J. Mol. Sci."},{"key":"10574_CR37","doi-asserted-by":"publisher","first-page":"661","DOI":"10.9734\/ijpss\/2022\/v34i242687","volume":"34","author":"GK Singh","year":"2022","unstructured":"Singh, G. K. et al. Effect of FYM, phosphorus and PSB on growth, yield attributes, quality, nutrient content (%) and uptake by kharif green gram [Vigna radiata (L.) Wilczek]. Int. J. Plant Soil Sci. 34, 661\u2013671 (2022).","journal-title":"Int. J. Plant Soil Sci."},{"key":"10574_CR38","doi-asserted-by":"publisher","first-page":"1287","DOI":"10.1080\/03650340.2018.1562548","volume":"65","author":"N Sehrawat","year":"2019","unstructured":"Sehrawat, N., Mukesh, Y., Kumar, S. A., Vikas, K. & Bhat, K. V. Salt stress and mungbean [Vigna radiata (L.) Wilczek]: effects, physiological perspective and management practices for alleviating salinity. Arch. Agron. Soil Sci. 65, 1287\u20131301 (2019).","journal-title":"Arch. Agron. Soil Sci."},{"key":"10574_CR39","doi-asserted-by":"publisher","first-page":"1602810","DOI":"10.3389\/fpls.2025.1602810","volume":"16","author":"Z-W Wang","year":"2025","unstructured":"Wang, Z.-W. et al. Genome-wide analysis of the TCP transcription factor family in mung bean and its dynamic regulatory network under salt stress. Front. Plant Sci. 16, 1602810 (2025).","journal-title":"Front. Plant Sci."},{"key":"10574_CR40","doi-asserted-by":"publisher","first-page":"3091","DOI":"10.1073\/pnas.1817621116","volume":"116","author":"Y-M Chang","year":"2019","unstructured":"Chang, Y.-M. et al. Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. PNAS 116, 3091\u20133099 (2019).","journal-title":"PNAS"},{"key":"10574_CR41","doi-asserted-by":"publisher","DOI":"10.1111\/tpj.70073","volume":"121","author":"GM Zheng","year":"2025","unstructured":"Zheng, G. M. et al. The chromatin accessibility landscape during early maize seed development. Plant J. 121, e70073 (2025).","journal-title":"Plant J."},{"key":"10574_CR42","doi-asserted-by":"publisher","first-page":"204","DOI":"10.1038\/nrg2719","volume":"11","author":"JA Law","year":"2010","unstructured":"Law, J. A. & Jacobsen, S. E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11, 204\u2013220 (2010).","journal-title":"Nat. Rev. Genet."},{"key":"10574_CR43","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-017-4218-0","volume":"18","author":"M Dworkin","year":"2017","unstructured":"Dworkin, M., Xie, S., Saha, M., Thimmapuram, J. & Kalavacharla, V. Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq. BMC Genom. 18, 851 (2017).","journal-title":"BMC Genom."},{"key":"10574_CR44","doi-asserted-by":"publisher","first-page":"268","DOI":"10.1111\/tpj.12726","volume":"81","author":"H Yang","year":"2015","unstructured":"Yang, H. et al. Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis. Plant J. 81, 268\u2013281 (2015).","journal-title":"Plant J."},{"key":"10574_CR45","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-023-04281-0","volume":"23","author":"JM Debernardi","year":"2023","unstructured":"Debernardi, J. M. et al. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei. BMC Plant Biol. 23, 270 (2023).","journal-title":"BMC Plant Biol."},{"key":"10574_CR46","doi-asserted-by":"publisher","first-page":"1895","DOI":"10.1111\/pce.14855","volume":"47","author":"SA Ganie","year":"2024","unstructured":"Ganie, S. A., McMulkin, N. & Devoto, A. The role of priming and memory in rice environmental stress adaptation: Current knowledge and perspectives. Plant Cell Environ. 47, 1895\u20131915 (2024).","journal-title":"Plant Cell Environ."},{"key":"10574_CR47","doi-asserted-by":"publisher","DOI":"10.1111\/ppl.70372","volume":"177","author":"KPR Aswathi","year":"2025","unstructured":"Aswathi, K. P. R. et al. The plant mind: unraveling abiotic stress priming, memory, and adaptation. Physiol. Plant. 177, e70372 (2025).","journal-title":"Physiol. Plant."},{"key":"10574_CR48","doi-asserted-by":"publisher","first-page":"328","DOI":"10.1111\/jpi.12350","volume":"61","author":"X Li","year":"2016","unstructured":"Li, X., Tan, D.-X., Jiang, D. & Liu, F. Melatonin enhances cold tolerance in drought-primed wild-type and abscisic acid-deficient mutant barley. J. Pineal Res. 61, 328\u2013339 (2016).","journal-title":"J. Pineal Res."},{"key":"10574_CR49","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1016\/j.scienta.2017.04.021","volume":"221","author":"M Ben Abdallah","year":"2017","unstructured":"Ben Abdallah, M., Methenni, K., Nouairi, I., Zarrouk, M. & Youssef, N. B. Drought priming improves subsequent more severe drought in a drought-sensitive cultivar of olive cv. Ch\u00e9toui. Sci. Hortic. 221, 43\u201352 (2017).","journal-title":"Sci. Hortic."},{"key":"10574_CR50","doi-asserted-by":"publisher","first-page":"105129","DOI":"10.1016\/j.envexpbot.2022.105129","volume":"205","author":"N Luki\u0107","year":"2023","unstructured":"Luki\u0107, N., Schurr, F. M., Trifkovi\u0107, T., Kukavica, B. & Walter, J. Transgenerational stress memory in plants is mediated by upregulation of the antioxidative system. Environ. Exp. Bot. 205, 105129 (2023).","journal-title":"Environ. Exp. Bot."},{"key":"10574_CR51","doi-asserted-by":"publisher","first-page":"968477","DOI":"10.3389\/fpls.2022.968477","volume":"13","author":"M Zhu","year":"2022","unstructured":"Zhu, M. et al. Jasmonic acid pretreatment improves salt tolerance of wheat by regulating hormones biosynthesis and antioxidant capacity. Front. Plant Sci. 13, 968477 (2022).","journal-title":"Front. Plant Sci."},{"key":"10574_CR52","doi-asserted-by":"publisher","first-page":"3584","DOI":"10.1007\/s42729-025-02354-7","volume":"25","author":"TA Khan","year":"2025","unstructured":"Khan, T. A. et al. The critical role of jasmonic acid to induce salt tolerance and improve crop productivity: review and prospective. J. Soil Sci. Plant Nutr. 25, 3584\u20133602 (2025).","journal-title":"J. Soil Sci. Plant Nutr."},{"key":"10574_CR53","doi-asserted-by":"publisher","first-page":"886862","DOI":"10.3389\/fpls.2022.886862","volume":"13","author":"MS Sheteiwy","year":"2022","unstructured":"Sheteiwy, M. S. et al. Association of jasmonic acid priming with multiple defense mechanisms in wheat plants under high salt stress. Front. Plant Sci. 13, 886862 (2022).","journal-title":"Front. Plant Sci."},{"key":"10574_CR54","doi-asserted-by":"publisher","first-page":"1221","DOI":"10.3390\/horticulturae10111221","volume":"10","author":"C Liu","year":"2024","unstructured":"Liu, C., Jiang, X. & Yuan, Z. Plant responses and adaptations to salt stress: a review. Horticulturae 10, 1221 (2024).","journal-title":"Horticulturae"},{"key":"10574_CR55","doi-asserted-by":"publisher","first-page":"1873","DOI":"10.3390\/plants10091873","volume":"10","author":"C Jacques","year":"2021","unstructured":"Jacques, C., Salon, C., Barnard, R. L., Vernoud, V. & Prudent, M. Drought stress memory at the plant cycle level: a review. Plants 10, 1873 (2021).","journal-title":"Plants"},{"key":"10574_CR56","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1007\/s00122-023-04313-1","volume":"136","author":"CM Kambona","year":"2023","unstructured":"Kambona, C. M., Koua, P. A., L\u00e9on, J. & Ballvora, A. Stress memory and its regulation in plants experiencing recurrent drought conditions. Theor. Appl. Genet. 136, 26 (2023).","journal-title":"Theor. Appl. Genet."},{"key":"10574_CR57","doi-asserted-by":"publisher","first-page":"112775","DOI":"10.1016\/j.plantsci.2025.112775","volume":"362","author":"B Ar\u0131kan","year":"2025","unstructured":"Ar\u0131kan, B., \u00c7ak\u0131r, \u00d6 & Turgat Kara, N. Epigenetic and transcriptomic features of stress memory during salt-stress priming in Arabidopsis. Plant Sci. 362, 112775 (2025).","journal-title":"Plant Sci."},{"key":"10574_CR58","doi-asserted-by":"publisher","first-page":"1085","DOI":"10.2307\/3870059","volume":"7","author":"RA Dixon","year":"1995","unstructured":"Dixon, R. A. & Paiva, N. L. Stress-induced phenylpropanoid metabolism.  Plant Cell 7, 1085\u20131097 (1995).","journal-title":"Plant Cell"},{"key":"10574_CR59","doi-asserted-by":"publisher","first-page":"2827","DOI":"10.1093\/jxb\/erv099","volume":"66","author":"LA del R\u00edo","year":"2015","unstructured":"del R\u00edo, L. A. ROS and RNS in plant physiology: an overview. J. Exp. Bot. 66, 2827\u20132837 (2015).","journal-title":"J. Exp. Bot."},{"key":"10574_CR60","doi-asserted-by":"publisher","first-page":"454","DOI":"10.1111\/j.1365-3040.2011.02400.x","volume":"35","author":"G Noctor","year":"2012","unstructured":"Noctor, G. et al. Glutathione in plants: an integrated overview. Plant, cell Environ. 35, 454\u2013484 (2012).","journal-title":"Plant, cell Environ."},{"key":"10574_CR61","doi-asserted-by":"publisher","first-page":"186","DOI":"10.1016\/j.copbio.2014.12.024","volume":"32","author":"NE Labrou","year":"2015","unstructured":"Labrou, N. E., Papageorgiou, A. C., Pavli, O. & Flemetakis, E. Plant GSTome: structure and functional role in xenome network and plant stress response. Curr. Opin. Biotechnol. 32, 186\u2013194 (2015).","journal-title":"Curr. Opin. Biotechnol."},{"key":"10574_CR62","doi-asserted-by":"crossref","unstructured":"Tholl, D. Biosynthesis and biological functions of terpenoids in plants. In Biotechnology of Isoprenoids (eds Schrader, J. & Bohlmann, J.) 63\u2013106 (Springer, Cham, 2015).","DOI":"10.1007\/10_2014_295"},{"key":"10574_CR63","doi-asserted-by":"publisher","DOI":"10.1186\/s40643-021-00421-2","volume":"8","author":"Z-Y Huang","year":"2021","unstructured":"Huang, Z.-Y., Ye, R.-Y., Yu, H.-L., Li, A.-T. & Xu, J.-H. Mining methods and typical structural mechanisms of terpene cyclases. Bioresour. Bioprocess. 8, 66 (2021).","journal-title":"Bioresour. Bioprocess."},{"key":"10574_CR64","doi-asserted-by":"publisher","first-page":"349","DOI":"10.1007\/s12298-024-01422-z","volume":"30","author":"AB Siddique","year":"2024","unstructured":"Siddique, A. B., Parveen, S., Rahman, M. Z. & Rahman, J. Revisiting plant stress memory: mechanisms and contribution to stress adaptation. Physiol. Mol. Biol. Plants 30, 349\u2013367 (2024).","journal-title":"Physiol. Mol. Biol. Plants"},{"key":"10574_CR65","doi-asserted-by":"publisher","DOI":"10.1002\/imt2.107","volume":"2","author":"S Chen","year":"2023","unstructured":"Chen, S. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2, e107 (2023).","journal-title":"iMeta"},{"key":"10574_CR66","doi-asserted-by":"publisher","first-page":"uhae337","DOI":"10.1093\/hr\/uhae337","volume":"12","author":"K-H Jia","year":"2025","unstructured":"Jia, K.-H. et al. Telomere-to-telomere, gap-free genome of mung bean (Vigna radiata) provides insights into domestication under structural variation. Hortic. Res. 12, uhae337 (2025).","journal-title":"Hortic. Res."},{"key":"10574_CR67","doi-asserted-by":"publisher","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","volume":"37","author":"D Kim","year":"2019","unstructured":"Kim, D., Paggi, J. M., Park, C., Bennett, C. & Salzberg, S. L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat. Biotechnol. 37, 907\u2013915 (2019).","journal-title":"Nat. Biotechnol."},{"key":"10574_CR68","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","volume":"30","author":"Y Liao","year":"2014","unstructured":"Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923\u2013930 (2014).","journal-title":"Bioinformatics"},{"key":"10574_CR69","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8","volume":"15","author":"MI Love","year":"2014","unstructured":"Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).","journal-title":"Genome Biol."},{"key":"10574_CR70","doi-asserted-by":"publisher","first-page":"5825","DOI":"10.1093\/molbev\/msab293","volume":"38","author":"CP Cantalapiedra","year":"2021","unstructured":"Cantalapiedra, C. P., Hern\u00e1ndez-Plaza, A., Letunic, I., Bork, P. & Huerta-Cepas, J. eggNOG-mapper v2: functional annotation,orthology assignments, and domain prediction at the metagenomic scale. Mol. Biol. Evol. 38, 5825\u20135829 (2021).","journal-title":"Mol. Biol. Evol."},{"key":"10574_CR71","volume":"2","author":"T Wu","year":"2021","unstructured":"Wu, T. et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. Innovation 2, 100141 (2021).","journal-title":"Innovation"},{"key":"10574_CR72","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1186\/1471-2105-9-559","volume":"9","author":"P Langfelder","year":"2008","unstructured":"Langfelder, P. & Horvath, S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinf. 9, 559 (2008).","journal-title":"BMC Bioinf."},{"key":"10574_CR73","doi-asserted-by":"publisher","first-page":"101541","DOI":"10.1016\/j.xpro.2022.101541","volume":"3","author":"Y-S Tsai","year":"2022","unstructured":"Tsai, Y.-S. et al. Generating transcriptional regulatory networks from time-ordered stem cell differentiation RNA sequencing data. STAR Protoc. 3, 101541 (2022).","journal-title":"STAR Protoc."},{"key":"10574_CR74","first-page":"D1104","volume":"48","author":"F Tian","year":"2019","unstructured":"Tian, F., Yang, D.-C., Meng, Y.-Q., Jin, J. & Gao, G. PlantRegMap: charting functional regulatory maps in plants. Nucleic Acids Res. 48, D1104\u2013D1113 (2019).","journal-title":"Nucleic Acids Res."},{"key":"10574_CR75","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498\u20132504 (2003).","journal-title":"Genome Res."},{"key":"10574_CR76","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-022-02844-2","volume":"24","author":"L Zhao","year":"2023","unstructured":"Zhao, L. et al. Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat. Genome Biol. 24, 7 (2023).","journal-title":"Genome Biol."},{"key":"10574_CR77","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.1038\/nmeth.2688","volume":"10","author":"JD Buenrostro","year":"2013","unstructured":"Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y. & Greenleaf, W. J. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 10, 1213\u20131218 (2013).","journal-title":"Nat. Methods"},{"key":"10574_CR78","doi-asserted-by":"publisher","first-page":"e41","DOI":"10.1093\/nar\/gkw1179","volume":"45","author":"Z Lu","year":"2016","unstructured":"Lu, Z., Hofmeister, B. T., Vollmers, C., DuBois, R. M. & Schmitz, R. J. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes. Nucleic Acids Res. 45, e41 (2016). e41.","journal-title":"Nucleic Acids Res."},{"key":"10574_CR79","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357\u2013359 (2012).","journal-title":"Nat. Methods"},{"key":"10574_CR80","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giab008","volume":"10","author":"P Danecek","year":"2021","unstructured":"Danecek, P. et al. Twelve years of SAMtools and BCFtools. GigaScience 10, giab008 (2021).","journal-title":"GigaScience"},{"key":"10574_CR81","doi-asserted-by":"publisher","first-page":"W187","DOI":"10.1093\/nar\/gku365","volume":"42","author":"F Ram\u00edrez","year":"2014","unstructured":"Ram\u00edrez, F., D\u00fcndar, F., Diehl, S., Gr\u00fcning, B. A. & Manke, T. deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 42, W187\u2013W191 (2014).","journal-title":"Nucleic Acids Res."},{"key":"10574_CR82","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-9-r137","volume":"9","author":"Y Zhang","year":"2008","unstructured":"Zhang, Y. et al. Model-based analysis of ChIP-seq (MACS). Genome Biol. 9, R137 (2008).","journal-title":"Genome Biol."},{"key":"10574_CR83","doi-asserted-by":"publisher","first-page":"841","DOI":"10.1093\/bioinformatics\/btq033","volume":"26","author":"AR Quinlan","year":"2010","unstructured":"Quinlan, A. R. & Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841\u2013842 (2010).","journal-title":"Bioinformatics"},{"key":"10574_CR84","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-02464-y","volume":"7","author":"M Kondili","year":"2017","unstructured":"Kondili, M. et al. UROPA: a tool for Universal RObust Peak Annotation. Sci. Rep. 7, 2593 (2017).","journal-title":"Sci. Rep."},{"key":"10574_CR85","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-18035-1","volume":"11","author":"M Bentsen","year":"2020","unstructured":"Bentsen, M. et al. ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation. Nat. Commun. 11, 4267 (2020).","journal-title":"Nat. Commun."},{"key":"10574_CR86","doi-asserted-by":"publisher","first-page":"D184","DOI":"10.1093\/nar\/gkaf1209","volume":"54","author":"D Ovek Baydar","year":"2025","unstructured":"Ovek Baydar, D. et al. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models. Nucleic Acids Res. 54, D184\u2013D193 (2025).","journal-title":"Nucleic Acids Res."},{"key":"10574_CR87","doi-asserted-by":"publisher","first-page":"W202","DOI":"10.1093\/nar\/gkp335","volume":"37","author":"TL Bailey","year":"2009","unstructured":"Bailey, T. L. et al. MEME Suite: tools for motif discovery and searching. Nucleic Acids Res. 37, W202\u2013W208 (2009).","journal-title":"Nucleic Acids Res."},{"key":"10574_CR88","doi-asserted-by":"publisher","first-page":"gkaf018","DOI":"10.1093\/nar\/gkaf018","volume":"53","author":"Y Chen","year":"2025","unstructured":"Chen, Y., Chen, L., Lun, A. T., Baldoni, P. L. & Smyth, G. K. edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets. Nucleic Acids Res. 53, gkaf018 (2025).","journal-title":"Nucleic Acids Res."},{"key":"10574_CR89","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1186\/s12859-018-2593-4","volume":"20","author":"Q Zhou","year":"2019","unstructured":"Zhou, Q., Lim, J.-Q., Sung, W.-K. & Li, G. An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping. BMC Bioinf. 20, 47 (2019).","journal-title":"BMC Bioinf."},{"key":"10574_CR90","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2012-13-10-r87","volume":"13","author":"A Akalin","year":"2012","unstructured":"Akalin, A. et al. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol. 13, R87 (2012).","journal-title":"Genome Biol."},{"key":"10574_CR91","doi-asserted-by":"publisher","unstructured":"Wang, Z. W. Multi-omics time-course dataset of salt adaptation in mung bean (Vigna radiata) [Data set]. Figshare https:\/\/doi.org\/10.6084\/m9.figshare.31238245.v1 (2026).","DOI":"10.6084\/m9.figshare.31238245.v1"}],"container-title":["Communications Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.nature.com\/articles\/s42003-026-10574-5","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-026-10574-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.nature.com\/articles\/s42003-026-10574-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T01:03:16Z","timestamp":1792630996000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.nature.com\/articles\/s42003-026-10574-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,1]]},"references-count":91,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["10574"],"URL":"https:\/\/doi.org\/10.1038\/s42003-026-10574-5","relation":{},"ISSN":["2399-3642"],"issn-type":[{"value":"2399-3642","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,1]]},"assertion":[{"value":"26 November 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"19 June 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Competing interests","group":{"name":"EthicsHeading","label":"Ethics"}}],"article-number":"1384"}}