{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T14:25:03Z","timestamp":1740147903599,"version":"3.37.3"},"reference-count":13,"publisher":"Georg Thieme Verlag KG","issue":"S 01","license":[{"start":{"date-parts":[[2023,1,3]],"date-time":"2023-01-03T00:00:00Z","timestamp":1672704000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002347","name":"Bundesministerium f\u00fcr Bildung und Forschung","doi-asserted-by":"crossref","award":["01KX2121,81Z0300108"],"award-info":[{"award-number":["01KX2121,81Z0300108"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Methods Inf Med"],"published-print":{"date-parts":[[2023,6]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>\n          Background\u2003As a national effort to better understand the current pandemic, three cohorts collect sociodemographic and clinical data from coronavirus disease 2019 (COVID-19) patients from different target populations within the German National Pandemic Cohort Network (NAPKON). Furthermore, the German Corona Consensus Dataset (GECCO) was introduced as a harmonized basic information model for COVID-19 patients in clinical routine. To compare the cohort data with other GECCO-based studies, data items are mapped to GECCO. As mapping from one information model to another is complex, an additional consistency evaluation of the mapped items is recommended to detect possible mapping issues or source data inconsistencies.<\/jats:p><jats:p>\n          Objectives\u2003The goal of this work is to assure high consistency of research data mapped to the GECCO data model. In particular, it aims at identifying contradictions within interdependent GECCO data items of the German national COVID-19 cohorts to allow investigation of possible reasons for identified contradictions. We furthermore aim at enabling other researchers to easily perform data quality evaluation on GECCO-based datasets and adapt to similar data models.<\/jats:p><jats:p>\n          Methods\u2003All suitable data items from each of the three NAPKON cohorts are mapped to the GECCO items. A consistency assessment tool (dqGecco) is implemented, following the design of an existing quality assessment framework, retaining their-defined consistency taxonomies, including logical and empirical contradictions. Results of the assessment are verified independently on the primary data source.<\/jats:p><jats:p>\n          Results\u2003Our consistency assessment tool helped in correcting the mapping procedure and reveals remaining contradictory value combinations within COVID-19 symptoms, vital signs, and COVID-19 severity. Consistency rates differ between the different indicators and cohorts ranging from 95.84% up to 100%.<\/jats:p><jats:p>\n          Conclusion\u2003An efficient and portable tool capable of discovering inconsistencies in the COVID-19 domain has been developed and applied to three different cohorts. As the GECCO dataset is employed in different platforms and studies, the tool can be directly applied there or adapted to similar information models.<\/jats:p>","DOI":"10.1055\/a-2006-1086","type":"journal-article","created":{"date-parts":[[2023,1,4]],"date-time":"2023-01-04T00:10:00Z","timestamp":1672791000000},"page":"e47-e56","source":"Crossref","is-referenced-by-count":2,"special_numbering":"S","title":["Consistency as a Data Quality Measure for German Corona Consensus Items Mapped from National Pandemic Cohort Network Data Collections"],"prefix":"10.1055","volume":"62","author":[{"given":"Khalid O.","family":"Yusuf","sequence":"additional","affiliation":[{"name":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Olga","family":"Miljukov","sequence":"additional","affiliation":[{"name":"Institute for Clinical Epidemiology and Biometry (ICE-B), University of W\u00fcrzburg, W\u00fcrzburg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anne","family":"Schoneberg","sequence":"additional","affiliation":[{"name":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sabine","family":"Han\u00df","sequence":"additional","affiliation":[{"name":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Wiesenfeldt","sequence":"additional","affiliation":[{"name":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, G\u00f6ttingen, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Melanie","family":"Stecher","sequence":"additional","affiliation":[{"name":"Department I for Internal Medicine, University Hospital Cologne, Cologne, Germany"},{"name":"German Centre for Infection Research, Partner Site Bonn-Cologne, Cologne, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lazar","family":"Mitrov","sequence":"additional","affiliation":[{"name":"Department I of Internal Medicine, Faculty of Medicine and University Hospital Cologne, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf, University of Cologne, Cologne, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sina Marie","family":"Hopff","sequence":"additional","affiliation":[{"name":"Department I of Internal Medicine, Faculty of Medicine and University Hospital Cologne, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf, University of Cologne, Cologne, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah","family":"Steinbrecher","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases and Respiratory Medicine, Charit\u00e9-Universitaetsmedizin Berlin, Berlin, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Florian","family":"Kurth","sequence":"additional","affiliation":[{"name":"Department of Infectious Diseases and Respiratory Medicine, Charit\u00e9-Universitaetsmedizin Berlin, Berlin, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thomas","family":"Bahmer","sequence":"additional","affiliation":[{"name":"Internal Medicine Department I, University Medical Center Schleswig-Holstein Campus Kiel, Kiel, Germany"},{"name":"Airway Research Center North (ARCN), German Center for Lung Research (DZL), W\u00f6hrendamm Gro\u00dfhansdorf, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefan","family":"Schreiber","sequence":"additional","affiliation":[{"name":"Internal Medicine Department I, University Medical Center Schleswig-Holstein Campus Kiel, Kiel, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel","family":"Pape","sequence":"additional","affiliation":[{"name":"Internal Medicine Department I, University Medical Center Schleswig-Holstein Campus Kiel, Kiel, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anna-Lena","family":"Hofmann","sequence":"additional","affiliation":[{"name":"Institute for Clinical Epidemiology and Biometry (ICE-B), University of W\u00fcrzburg, W\u00fcrzburg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mirjam","family":"Kohls","sequence":"additional","affiliation":[{"name":"Institute for Clinical Epidemiology and Biometry (ICE-B), University of W\u00fcrzburg, W\u00fcrzburg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefan","family":"St\u00f6rk","sequence":"additional","affiliation":[{"name":"Department Clinical Research & Epidemiology, University Hospital W\u00fcrzburg, Comprehensive Heart Failure Center, and Department Internal Medicine I, W\u00fcrzburg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hans Christian","family":"Stubbe","sequence":"additional","affiliation":[{"name":"Department of Medicine II, University Hospital, LMU Munich, Munich, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Johannes J.","family":"Tebbe","sequence":"additional","affiliation":[{"name":"Department of Gastroenterology and Infectious Diseases, University Medical Center East Westphalia-Lippe, Klinikum Lippe, Lemgo, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Johannes C.","family":"Hellmuth","sequence":"additional","affiliation":[{"name":"Department of Medicine III, University Hospital, LMU Munich, Munich, Germany"},{"name":"COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Johanna","family":"Erber","sequence":"additional","affiliation":[{"name":"Department II of Internal Medicine, Technical University of Munich, School of Medicine, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lilian","family":"Krist","sequence":"additional","affiliation":[{"name":"Institute of Social Medicine, Epidemiology and Health Economics, Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Siegbert","family":"Rieg","sequence":"additional","affiliation":[{"name":"Department of Medicine II, Division of Infectious Diseases, Medical Centre \u2013 University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lisa","family":"Pilgram","sequence":"additional","affiliation":[{"name":"Department II of Internal Medicine, 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