{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,7]],"date-time":"2026-04-07T00:57:54Z","timestamp":1775523474540,"version":"3.50.1"},"reference-count":32,"publisher":"CSIRO Publishing","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018,3,6]]},"DOI":"10.1071\/ma18011","type":"journal-article","created":{"date-parts":[[2018,2,15]],"date-time":"2018-02-15T23:09:47Z","timestamp":1518736187000},"page":"42-46","source":"Crossref","is-referenced-by-count":29,"title":["Establishing microbial baselines to identify indicators of coral reef health"],"prefix":"10.1071","volume":"39","author":[{"given":"Bettina","family":"Glasl","sequence":"first","affiliation":[{"name":"AAustralian Institute of Marine Science, Townsville, Qld 4810, Australia"},{"name":"BCollege of Science and Engineering, James Cook University, Townsville, Qld 4811, Australia"},{"name":"CAIMS@JCU, Townsville, Qld 4811, Australia"},{"name":"FTel: +61 7 4753 4444, Fax: +61 7 4772 5852, Email: b.glasl@aims.gov.au"}]},{"given":"David G","family":"Bourne","sequence":"additional","affiliation":[{"name":"AAustralian Institute of Marine Science, Townsville, Qld 4810, Australia"},{"name":"BCollege of Science and Engineering, James Cook University, Townsville, Qld 4811, Australia"}]},{"given":"Pedro R","family":"Frade","sequence":"additional","affiliation":[{"name":"DCentre of Marine Sciences, University of Algarve, 8005-139 Faro, Portugal"}]},{"given":"Nicole S","family":"Webster","sequence":"additional","affiliation":[{"name":"AAustralian Institute of Marine Science, Townsville, Qld 4810, Australia"},{"name":"EAustralian Centre for Ecogenomics, University of Queensland, Brisbane, Qld 4072, Australia"}]}],"member":"67","published-online":{"date-parts":[[2018,2,16]]},"reference":[{"key":"2025111816360397700_R1","doi-asserted-by":"publisher","first-page":"1302","DOI":"10.1126\/science.199.4335.1302","article-title":"Diversity in tropical rain forests and coral reefs.","volume":"199","author":"Connell","year":"1978","journal-title":"Science"},{"key":"2025111816360397700_R2"},{"key":"2025111816360397700_R3","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1038\/nature22901","article-title":"Coral reefs in the Anthropocene.","volume":"546","author":"Hughes","year":"2017","journal-title":"Nature"},{"key":"2025111816360397700_R4"},{"key":"2025111816360397700_R5","doi-asserted-by":"publisher","first-page":"17995","DOI":"10.1073\/pnas.1208909109","article-title":"The 27-year decline of coral cover on the Great Barrier Reef and its causes.","volume":"109","author":"De\u2019ath","year":"2012","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111816360397700_R6"},{"key":"2025111816360397700_R7","doi-asserted-by":"publisher","first-page":"e54","DOI":"10.1371\/journal.pbio.0060054","article-title":"Shifting baselines, local impacts, and global change on coral reefs.","volume":"6","author":"Knowlton","year":"2008","journal-title":"PLoS Biol."},{"key":"2025111816360397700_R8","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1016\/j.marpolbul.2011.12.012","article-title":"Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses.","volume":"65","author":"Brodie","year":"2012","journal-title":"Mar. Pollut. Bull."},{"key":"2025111816360397700_R9","doi-asserted-by":"publisher","first-page":"394","DOI":"10.1016\/j.marpolbul.2011.09.031","article-title":"Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems.","volume":"65","author":"Waterhouse","year":"2012","journal-title":"Mar. Pollut. Bull."},{"key":"2025111816360397700_R10","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1146\/annurev-micro-102215-095440","article-title":"Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems.","volume":"70","author":"Bourne","year":"2016","journal-title":"Ann. Rev. Microbiol."},{"key":"2025111816360397700_R11","doi-asserted-by":"publisher","first-page":"e00135-16","DOI":"10.1128\/mBio.00135-16","article-title":"The sponge hologenome.","volume":"7","author":"Webster","year":"2016","journal-title":"mBio"},{"key":"2025111816360397700_R12","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1111\/1574-6976.12011","article-title":"The seaweed holobiont: understanding seaweed\u2013bacteria interactions.","volume":"37","author":"Egan","year":"2013","journal-title":"FEMS Microbiol. Rev."},{"key":"2025111816360397700_R13","doi-asserted-by":"publisher","first-page":"3229","DOI":"10.1073\/pnas.1218525110","article-title":"Animals in a bacterial world, a new imperative for the life sciences.","volume":"110","author":"McFall-Ngai","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111816360397700_R14","doi-asserted-by":"publisher","first-page":"14213","DOI":"10.1038\/ncomms14213","article-title":"Bacterial community dynamics are linked to patterns of coral heat tolerance.","volume":"8","author":"Ziegler","year":"2017","journal-title":"Nat. Commun."},{"key":"2025111816360397700_R15","doi-asserted-by":"publisher","first-page":"2167","DOI":"10.1038\/ismej.2017.66","article-title":"Microbial contributions to the persistence of coral reefs.","volume":"11","author":"Webster","year":"2017","journal-title":"ISME J."},{"key":"2025111816360397700_R16","doi-asserted-by":"publisher","first-page":"e1511","DOI":"10.7717\/peerj.1511","article-title":"Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events.","volume":"4","author":"Angly","year":"2016","journal-title":"PeerJ"},{"key":"2025111816360397700_R17","doi-asserted-by":"publisher","first-page":"629","DOI":"10.1016\/j.marpolbul.2015.12.045","article-title":"Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea.","volume":"105","author":"Ziegler","year":"2016","journal-title":"Mar. Pollut. Bull."},{"key":"2025111816360397700_R18","doi-asserted-by":"publisher","first-page":"16042","DOI":"10.1038\/nmicrobiol.2016.42","article-title":"Global microbialization of coral reefs.","volume":"1","author":"Haas","year":"2016","journal-title":"Nat. Microbiol."},{"key":"2025111816360397700_R19","doi-asserted-by":"publisher","first-page":"11833","DOI":"10.1038\/ncomms11833","article-title":"Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales.","volume":"7","author":"Zaneveld","year":"2016","journal-title":"Nat. Commun."},{"key":"2025111816360397700_R20","doi-asserted-by":"publisher","first-page":"1518","DOI":"10.1126\/science.aad9957","article-title":"Corals\u2019 microbial sentinels.","volume":"352","author":"Ainsworth","year":"2016","journal-title":"Science"},{"key":"2025111816360397700_R21","doi-asserted-by":"publisher","first-page":"833","DOI":"10.1111\/j.1462-2920.2011.02597.x","article-title":"New directions in coral reef microbial ecology.","volume":"14","author":"Garren","year":"2012","journal-title":"Environ. Microbiol."},{"key":"2025111816360397700_R22","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1007\/s00227-017-3097-x","article-title":"Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems.","volume":"164","author":"Glasl","year":"2017","journal-title":"Mar. Biol."},{"key":"2025111816360397700_R23","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1186\/s13742-016-0126-5","article-title":"Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.","volume":"5","author":"Bissett","year":"2016","journal-title":"Gigascience"},{"key":"2025111816360397700_R24","doi-asserted-by":"publisher","first-page":"1674","DOI":"10.1111\/j.1600-0706.2010.18334.x","article-title":"Improving indicator species analysis by combining groups of sites.","volume":"119","author":"De C\u00e1ceres","year":"2010","journal-title":"Oikos"},{"key":"2025111816360397700_R25","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1046\/j.1365-2427.1999.00430.x","article-title":"AusRivAS: using macroinvertebrates to assess ecological condition of rivers in Western Australia.","volume":"41","author":"Smith","year":"1999","journal-title":"Freshw. Biol."},{"key":"2025111816360397700_R26","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1111\/j.1442-9993.1995.tb00531.x","article-title":"Development and use of a system for predicting the macroinvertebrate fauna in flowing waters.","volume":"20","author":"Wright","year":"1995","journal-title":"Aust. J. Ecol."},{"key":"2025111816360397700_R27","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1007\/s00338-009-0512-x","article-title":"Bioindicators of changes in water quality on coral reefs: review and recommendations for monitoring programmes.","volume":"28","author":"Cooper","year":"2009","journal-title":"Coral Reefs"},{"key":"2025111816360397700_R28","doi-asserted-by":"publisher","first-page":"e107429","DOI":"10.1371\/journal.pone.0107429","article-title":"Coliform bacteria as indicators of diarrheal risk in household drinking water: systematic review and meta-analysis.","volume":"9","author":"Gruber","year":"2014","journal-title":"PLoS One"},{"key":"2025111816360397700_R29","doi-asserted-by":"publisher","first-page":"254","DOI":"10.1016\/j.watres.2014.08.026","article-title":"Human health risk implications of multiple sources of faecal indicator bacteria in a recreational waterbody.","volume":"66","author":"Soller","year":"2014","journal-title":"Water Res."},{"key":"2025111816360397700_R30","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1016\/j.chom.2015.12.016","article-title":"Taking it personally: personalized utilization of the human microbiome in health and disease.","volume":"19","author":"Zmora","year":"2016","journal-title":"Cell Host Microbe"},{"key":"2025111816360397700_R31","doi-asserted-by":"publisher","first-page":"292","DOI":"10.1016\/j.chom.2011.09.003","article-title":"Human-associated microbial signatures: examining their predictive value.","volume":"10","author":"Knights","year":"2011","journal-title":"Cell Host Microbe"},{"key":"2025111816360397700_R32","doi-asserted-by":"publisher","first-page":"e43233","DOI":"10.1371\/journal.pone.0043233","article-title":"Assessing coral reefs on a pacific-wide scale using the microbialization score.","volume":"7","author":"McDole","year":"2012","journal-title":"PLoS One"}],"container-title":["Microbiology Australia"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/connectsci.au\/ma\/article-pdf\/39\/1\/42\/1290958\/ma18011.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/connectsci.au\/ma\/article-pdf\/39\/1\/42\/1290958\/ma18011.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,18]],"date-time":"2025-11-18T21:36:07Z","timestamp":1763501767000},"score":1,"resource":{"primary":{"URL":"https:\/\/connectsci.au\/ma\/article\/39\/1\/42\/191637\/Establishing-microbial-baselines-to-identify"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,2,16]]},"references-count":32,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2018,2,16]]},"published-print":{"date-parts":[[2018,3,6]]}},"URL":"https:\/\/doi.org\/10.1071\/ma18011","relation":{},"ISSN":["1324-4272","2201-9189"],"issn-type":[{"value":"1324-4272","type":"print"},{"value":"2201-9189","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,2,16]]}}}