{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T15:37:18Z","timestamp":1790696238507,"version":"4.1.0"},"reference-count":37,"publisher":"National Academy of Sciences","issue":"43","content-domain":{"domain":["www.pnas.org"],"crossmark-restriction":true},"short-container-title":["Proc. Natl. Acad. Sci. U.S.A."],"published-print":{"date-parts":[[2013,10,22]]},"abstract":"<jats:title>Significance<\/jats:title>\n                  <jats:p>\n                    <jats:italic>Shigella sonnei<\/jats:italic>\n                    is a globally emerging agent of bacterial dysentery. Here, we use genomics to examine the microevolution of\n                    <jats:italic>S. sonnei<\/jats:italic>\n                    in Vietnam. We show that\n                    <jats:italic>S. sonnei<\/jats:italic>\n                    was introduced into Vietnam in the early 1980s, where it continued to evolve, spreading geographically to establish localized founder populations. The population in Ho Chi Minh City has undergone several localized clonal replacement events, during which a small number of microevolutionary changes have risen to dominance. These changes, induced by horizontal gene transfer and substitution mutations, confer high-level antimicrobial resistance and the ability to kill other gut bacteria. This work provides a unique, high-resolution insight into the microevolution of a pioneering human pathogen during its establishment in a new host population.\n                  <\/jats:p>","DOI":"10.1073\/pnas.1308632110","type":"journal-article","created":{"date-parts":[[2013,10,1]],"date-time":"2013-10-01T02:09:28Z","timestamp":1380593368000},"page":"17522-17527","update-policy":"https:\/\/doi.org\/10.1073\/pnas.cm10313","source":"Crossref","is-referenced-by-count":137,"title":["Tracking the establishment of local endemic populations of an emergent enteric pathogen"],"prefix":"10.1073","volume":"110","author":[{"given":"Kathryn E.","family":"Holt","sequence":"first","affiliation":[{"name":"Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC 3010, Australia;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tran Vu","family":"Thieu Nga","sequence":"additional","affiliation":[{"name":"Hospital for Tropical Diseases, Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Quan 5, Vietnam;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Duy Pham","family":"Thanh","sequence":"additional","affiliation":[{"name":"Hospital for Tropical Diseases, Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Quan 5, Vietnam;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ha","family":"Vinh","sequence":"additional","affiliation":[{"name":"Hospital for Tropical Diseases, Oxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Quan 5, Vietnam;"},{"name":"Hospital for Tropical Diseases, Ho Chi Minh City, Quan 5, Vietnam;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dong 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