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Natl. Acad. Sci. U.S.A."],"published-print":{"date-parts":[[2024,1,9]]},"abstract":"<jats:p>\n                    Habitat degradation and loss of genetic diversity are common threats faced by almost all of today\u2019s wild cats. Big cats, such as tigers and lions, are of great concern and have received considerable conservation attention through policies and international actions. However, knowledge of and conservation actions for small wild cats are lagging considerably behind. The black-footed cat,\n                    <jats:italic>Felis nigripes<\/jats:italic>\n                    , one of the smallest felid species, is experiencing increasing threats with a rapid reduction in population size. However, there is a lack of genetic information to assist in developing effective conservation actions. A de novo assembly of a high-quality chromosome-level reference genome of the black-footed cat was made, and comparative genomics and population genomics analyses were carried out. These analyses revealed that the most significant genetic changes in the evolution of the black-footed cat are the rapid evolution of sensory and metabolic-related genes, reflecting genetic adaptations to its characteristic nocturnal hunting and a high metabolic rate. Genomes of the black-footed cat exhibit a high level of inbreeding, especially for signals of recent inbreeding events, which suggest that they may have experienced severe genetic isolation caused by habitat fragmentation. More importantly, inbreeding associated with two deleterious mutated genes may exacerbate the risk of amyloidosis, the dominant disease that causes mortality of about 70% of captive individuals. Our research provides comprehensive documentation of the evolutionary history of the black-footed cat and suggests that there is an urgent need to investigate genomic variations of small felids worldwide to support effective conservation actions.\n                  <\/jats:p>","DOI":"10.1073\/pnas.2310763120","type":"journal-article","created":{"date-parts":[[2024,1,2]],"date-time":"2024-01-02T13:51:23Z","timestamp":1704203483000},"update-policy":"https:\/\/doi.org\/10.1073\/pnas.cm10313","source":"Crossref","is-referenced-by-count":8,"title":["The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids"],"prefix":"10.1073","volume":"121","author":[{"given":"Jiaqing","family":"Yuan","sequence":"first","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, 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Engineering, Shaanxi University of Technology, Hanzhong 723099, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peng","family":"Yang","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guiqiang","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0006-1235-3374","authenticated-orcid":false,"given":"Chen","family":"Huang","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jinhong","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenhui","family":"Hou","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9258-7237","authenticated-orcid":false,"given":"Yang","family":"Liu","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wu","family":"Chen","sequence":"additional","affiliation":[{"name":"Guangzhou Zoo, Guangzhou Wildlife Research Center, Guangzhou 510070, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Da","family":"Mi","sequence":"additional","affiliation":[{"name":"Xi\u2019an Haorui Genomics Technology Co., Ltd., Xi\u2019an 710116, China"},{"name":"School of Life Science and Technology, Xi\u2019an Jiaotong University, Xi\u2019an 710049, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3699-0723","authenticated-orcid":false,"given":"William J.","family":"Murphy","sequence":"additional","affiliation":[{"name":"Veterinary Integrative Biosciences, Texas A&amp;M University, College Station, TX 77843"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7400-5486","authenticated-orcid":false,"given":"Gang","family":"Li","sequence":"additional","affiliation":[{"name":"College of Life Sciences, Shaanxi Normal University, Xi\u2019an 710119, China"},{"name":"Guangzhou Zoo, Guangzhou Wildlife Research Center, Guangzhou 510070, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"341","published-online":{"date-parts":[[2024,1,2]]},"reference":[{"key":"e_1_3_4_1_2","volume-title":"The Natural History of the Wild Cats","author":"Kitchener A.","year":"1991","unstructured":"A. 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Yuan The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids. National Center for Biotechnology Information: SAMN34164677 SAMN34164678 SAMN37521773-SAMN37521781 JAVSGG000000000. NCBI. https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/955150. Deposited 13 April 2023."},{"key":"e_1_3_4_86_2","doi-asserted-by":"crossref","unstructured":"J. Yuan The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids. GitHub: https:\/\/github.com\/GanglabSnnu\/bfcproj. 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