{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T02:06:22Z","timestamp":1792634782918,"version":"4.5.0"},"reference-count":26,"publisher":"Elsevier BV","issue":"9","license":[{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2020,9,7]],"date-time":"2020-09-07T00:00:00Z","timestamp":1599436800000},"content-version":"vor","delay-in-days":1102,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["21475005"],"award-info":[{"award-number":["21475005"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["21622501"],"award-info":[{"award-number":["21622501"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["mcponline.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Molecular &amp; Cellular Proteomics"],"published-print":{"date-parts":[[2017,9]]},"DOI":"10.1074\/mcp.m117.068296","type":"journal-article","created":{"date-parts":[[2017,7,3]],"date-time":"2017-07-03T20:35:18Z","timestamp":1499114118000},"page":"1683-1693","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":11,"title":["Temporal Regulation of a Salmonella Typhimurium Virulence Factor by the Transcriptional Regulator YdcR"],"prefix":"10.1016","volume":"16","author":[{"given":"Yanhua","family":"Liu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qian","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linlu","family":"Qi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tao","family":"Ding","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhen","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiaqi","family":"Fu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mo","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeongmin","family":"Song","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoyun","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1074\/mcp.M117.068296_bib1","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1146\/annurev.med.52.1.259","article-title":"Salmonella: a model for bacterial pathogenesis","volume":"52","author":"Ohl","year":"2001","journal-title":"Annu. Rev. Med"},{"key":"10.1074\/mcp.M117.068296_bib2","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1146\/annurev.cellbio.17.1.53","article-title":"Salmonella interactions with host cells: type III secretion at work","volume":"17","author":"Gal\u00e1n","year":"2001","journal-title":"Annu. Rev. Cell Dev. Biol"},{"key":"10.1074\/mcp.M117.068296_bib3","doi-asserted-by":"crossref","first-page":"685","DOI":"10.2217\/fmb.12.49","article-title":"Type III effector-mediated processes in Salmonella infection","volume":"7","author":"van der Heijden","year":"2012","journal-title":"Future Microbiol"},{"key":"10.1074\/mcp.M117.068296_bib4","doi-asserted-by":"crossref","first-page":"2022","DOI":"10.1111\/j.1600-0854.2008.00827.x","article-title":"Salmonella-containing vacuoles: directing traffic and nesting to grow","volume":"9","author":"Bakowski","year":"2008","journal-title":"Traffic"},{"key":"10.1074\/mcp.M117.068296_bib5","doi-asserted-by":"crossref","first-page":"2897","DOI":"10.1128\/IAI.02882-14","article-title":"Proteomic analyses of intracellular Salmonella enterica serovar Typhimurium reveal extensive bacterial adaptations to infected host epithelial cells","volume":"83","author":"Liu","year":"2015","journal-title":"Infect. Immun"},{"key":"10.1074\/mcp.M117.068296_bib6","doi-asserted-by":"crossref","first-page":"788","DOI":"10.1021\/acs.jproteome.6b00793","article-title":"Quantitative proteomics charts the landscape of Salmonella carbon metabolism within host epithelial cells","volume":"16","author":"Liu","year":"2017","journal-title":"J. Proteome Res"},{"key":"10.1074\/mcp.M117.068296_bib7","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1073\/pnas.91.2.489","article-title":"A cytolysin encoded by Salmonella is required for survival within macrophages","volume":"91","author":"Libby","year":"1994","journal-title":"Proc. Natl. Acad. Sci. U.S.A"},{"key":"10.1074\/mcp.M117.068296_bib8","doi-asserted-by":"crossref","first-page":"4354","DOI":"10.1128\/IAI.73.7.4354-4362.2005","article-title":"SlyA regulates function of Salmonella pathogenicity island 2 (SPI-2) and expression of SPI-2-associated genes","volume":"73","author":"Linehan","year":"2005","journal-title":"Infect. Immun"},{"key":"10.1074\/mcp.M117.068296_bib9","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1111\/j.1365-2958.2005.04553.x","article-title":"Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP\/PhoQ","volume":"56","author":"Navarre","year":"2005","journal-title":"Mol. Microbiol"},{"key":"10.1074\/mcp.M117.068296_bib10","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1111\/j.1574-6968.1991.tb04544.x","article-title":"A new family of bacterial regulatory proteins","volume":"63","author":"Haydon","year":"1991","journal-title":"FEMS Microbiol. Lett"},{"key":"10.1074\/mcp.M117.068296_bib11","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1002\/iub.1401","article-title":"Allosteric control of transcription in GntR family of transcription regulators: A structural overview","volume":"67","author":"Jain","year":"2015","journal-title":"IUBMB Life"},{"key":"10.1074\/mcp.M117.068296_bib12","doi-asserted-by":"crossref","first-page":"6640","DOI":"10.1073\/pnas.120163297","article-title":"One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products","volume":"97","author":"Datsenko","year":"2000","journal-title":"Proc. Natl. Acad. Sci. U.S.A"},{"key":"10.1074\/mcp.M117.068296_bib13","doi-asserted-by":"crossref","first-page":"15264","DOI":"10.1073\/pnas.261348198","article-title":"Epitope tagging of chromosomal genes in Salmonella","volume":"98","author":"Uzzau","year":"2001","journal-title":"Proc. Natl. Acad. Sci. U.S.A"},{"key":"10.1074\/mcp.M117.068296_bib14","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1101\/gad.3.2.185","article-title":"Position and density effects on repression by stationary and mobile DNA-binding proteins","volume":"3","author":"Elledge","year":"1989","journal-title":"Genes Dev"},{"key":"10.1074\/mcp.M117.068296_bib15","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.jprot.2014.06.017","article-title":"Decreasing the amount of trypsin in in-gel digestion leads to diminished chemical noise and improved protein identifications","volume":"109","author":"Hu","year":"2014","journal-title":"J. Proteomics"},{"key":"10.1074\/mcp.M117.068296_bib16","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1006\/meth.2001.1262","article-title":"Analysis of relative gene expression data using real-time quantitative PCR and the 2\u2212\u0394\u0394CT method","volume":"25","author":"Livak","year":"2001","journal-title":"Methods"},{"key":"10.1074\/mcp.M117.068296_bib17","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1016\/j.bbrc.2011.10.017","article-title":"Genomic distribution and heterogeneity of MocR-like transcriptional factors containing a domain belonging to the superfamily of the pyridoxal-5\u2032-phosphate dependent enzymes of fold type I","volume":"415","author":"Bramucci","year":"2011","journal-title":"Biochem. Biophys. Res. Commun"},{"key":"10.1074\/mcp.M117.068296_bib18","doi-asserted-by":"crossref","first-page":"3982","DOI":"10.1073\/pnas.0811669106","article-title":"Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function","volume":"106","author":"Osborne","year":"2009","journal-title":"Proc. Natl. Acad. Sci. U.S.A"},{"key":"10.1074\/mcp.M117.068296_bib19","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1046\/j.1365-2958.2002.03036.x","article-title":"GabR, a member of a novel protein family, regulates the utilization of gamma-aminobutyrate in Bacillus subtilis","volume":"45","author":"Belitsky","year":"2002","journal-title":"Mol. Microbiol"},{"key":"10.1074\/mcp.M117.068296_bib20","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1111\/mmi.12861","article-title":"Role of the aminotransferase domain in Bacillus subtilis GabR, a pyridoxal 5\u2032-phosphate-dependent transcriptional regulator","volume":"95","author":"Okuda","year":"2015","journal-title":"Mol. Microbiol"},{"key":"10.1074\/mcp.M117.068296_bib21","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1099\/mic.0.044818-0","article-title":"Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032","volume":"157","author":"Jochmann","year":"2011","journal-title":"Microbiology"},{"key":"10.1074\/mcp.M117.068296_bib22","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1128\/JB.01510-07","article-title":"The GntR-like regulator TauR activates expression of taurine utilization genes in Rhodobacter capsulatus","volume":"190","author":"Wiethaus","year":"2008","journal-title":"J. Bacteriol"},{"key":"10.1074\/mcp.M117.068296_bib23","doi-asserted-by":"crossref","first-page":"4201","DOI":"10.1111\/febs.13415","article-title":"A new member of MocR\/GabR-type PLP-binding regulator of D-alanyl-D-alanine ligase in Brevibacillus brevis","volume":"282","author":"Takenaka","year":"2015","journal-title":"FEBS J"},{"key":"10.1074\/mcp.M117.068296_bib24","doi-asserted-by":"crossref","first-page":"e1000875","DOI":"10.1371\/journal.pgen.1000875","article-title":"Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system","volume":"6","author":"Tomljenovic-Berube","year":"2010","journal-title":"PLoS Genet"},{"key":"10.1074\/mcp.M117.068296_bib25","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1186\/1752-0509-5-100","article-title":"Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella","volume":"5","author":"Yoon","year":"2011","journal-title":"BMC Syst. Biol"},{"key":"10.1074\/mcp.M117.068296_bib26","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1126\/science.1128794","article-title":"Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella","volume":"313","author":"Navarre","year":"2006","journal-title":"Science"}],"container-title":["Molecular &amp; Cellular Proteomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1535947620323598?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1535947620323598?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1074\/mcp.M117.068296","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T00:35:57Z","timestamp":1761525357000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1535947620323598"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,9]]},"references-count":26,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2017,9]]}},"alternative-id":["S1535947620323598"],"URL":"https:\/\/doi.org\/10.1074\/mcp.m117.068296","relation":{},"ISSN":["1535-9476"],"issn-type":[{"value":"1535-9476","type":"print"}],"subject":[],"published":{"date-parts":[[2017,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Temporal Regulation of a Salmonella Typhimurium Virulence Factor by the Transcriptional Regulator YdcR","name":"articletitle","label":"Article Title"},{"value":"Molecular & Cellular Proteomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1074\/mcp.M117.068296","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2017 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.","name":"copyright","label":"Copyright"}]}}