{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,17]],"date-time":"2026-09-17T11:18:18Z","timestamp":1789643898850,"version":"4.0.0"},"reference-count":74,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2007,4,1]],"date-time":"2007-04-01T00:00:00Z","timestamp":1175385600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2007,4,1]],"date-time":"2007-04-01T00:00:00Z","timestamp":1175385600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2020,8,31]],"date-time":"2020-08-31T00:00:00Z","timestamp":1598832000000},"content-version":"vor","delay-in-days":4901,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["mcponline.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Molecular &amp; Cellular Proteomics"],"published-print":{"date-parts":[[2007,4]]},"DOI":"10.1074\/mcp.m600282-mcp200","type":"journal-article","created":{"date-parts":[[2007,1,16]],"date-time":"2007-01-16T22:32:59Z","timestamp":1168986779000},"page":"717-727","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":26,"title":["Targeted Protein Degradation by Salmonella under Phagosome-mimicking Culture Conditions Investigated Using Comparative Peptidomics"],"prefix":"10.1016","volume":"6","author":[{"given":"Nathan P.","family":"Manes","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean K.","family":"Gustin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joanne","family":"Rue","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Heather M.","family":"Mottaz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samuel O.","family":"Purvine","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Angela D.","family":"Norbeck","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew E.","family":"Monroe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jennifer S.D.","family":"Zimmer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thomas O.","family":"Metz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joshua N.","family":"Adkins","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Richard D.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fred","family":"Heffron","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1074\/mcp.M600282-MCP200_bib1","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1016\/j.copbio.2004.10.007","article-title":"Exploiting natural peptide diversity: novel research tools and drug leads","volume":"15","author":"Adermann","year":"2004","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1074\/mcp.M600282-MCP200_bib2","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1586\/14789450.2.4.463","article-title":"Peptidomics: a logical sequel to proteomics","volume":"2","author":"Ivanov","year":"2005","journal-title":"Expert Rev. Proteomics"},{"key":"10.1074\/mcp.M600282-MCP200_bib3","doi-asserted-by":"crossref","first-page":"697","DOI":"10.2174\/138620705774962418","article-title":"The peptidomics concept","volume":"8","author":"Schulz-Knappe","year":"2005","journal-title":"Comb. Chem. High Throughput Screen."},{"key":"10.1074\/mcp.M600282-MCP200_bib4","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1002\/mas.20015","article-title":"Proteomics by FTICR mass spectrometry: top down and bottom up","volume":"24","author":"Bogdanov","year":"2005","journal-title":"Mass Spectrom. Rev."},{"key":"10.1074\/mcp.M600282-MCP200_bib5","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1002\/mas.20071","article-title":"Advances in proteomics data analysis and display using an accurate mass and time tag approach","volume":"25","author":"Zimmer","year":"2006","journal-title":"Mass Spectrom. Rev."},{"key":"10.1074\/mcp.M600282-MCP200_bib6","doi-asserted-by":"crossref","first-page":"1450","DOI":"10.1074\/mcp.M600139-MCP200","article-title":"Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions","volume":"5","author":"Adkins","year":"2006","journal-title":"Mol. Cell. Proteomics"},{"key":"10.1074\/mcp.M600282-MCP200_bib7","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1093\/clinids\/10.1.111","article-title":"A review of human salmonellosis: III. Magnitude of Salmonella infection in the United States","volume":"10","author":"Chalker","year":"1988","journal-title":"Rev. Infect Dis."},{"key":"10.1074\/mcp.M600282-MCP200_bib8","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/S0966-842X(00)88937-4","article-title":"Typhoid fever and other salmonellosis: a continuing challenge","volume":"3","author":"Pang","year":"1995","journal-title":"Trends Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib9","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1038\/nrmicro1325","article-title":"Antimicrobial-resistant bacteria in the community setting","volume":"4","author":"Furuya","year":"2006","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib10","doi-asserted-by":"crossref","first-page":"498","DOI":"10.3201\/eid0504.990406","article-title":"Historical trends related to bioterrorism: An empirical analysis","volume":"5","author":"Tucker","year":"1999","journal-title":"Emerg. Infect. Dis."},{"key":"10.1074\/mcp.M600282-MCP200_bib11","doi-asserted-by":"crossref","first-page":"3235","DOI":"10.1093\/emboj\/19.13.3235","article-title":"Salmonella maintains the integrity of its intracellular vacuole through the action of SifA","volume":"19","author":"Beuzon","year":"2000","journal-title":"EMBO J."},{"key":"10.1074\/mcp.M600282-MCP200_bib12","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1046\/j.1365-2958.1999.01527.x","article-title":"pH-dependent secretion of SseB, a product of the SPI-2 type III secretion system of Salmonella typhimurium","volume":"33","author":"Beuzon","year":"1999","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib13","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1038\/416291a","article-title":"Killing activity of neutrophils is mediated through activation of proteases by K+ flux","volume":"416","author":"Reeves","year":"2002","journal-title":"Nature"},{"key":"10.1074\/mcp.M600282-MCP200_bib14","doi-asserted-by":"crossref","first-page":"1491","DOI":"10.4049\/jimmunol.174.3.1491","article-title":"Elemental analysis of Mycobacterium avium-, Mycobacterium tuberculosis-, and Mycobacterium smegmatis-containing phagosomes indicates pathogen-induced microenvironments within the host cell's endosomal system","volume":"174","author":"Wagner","year":"2005","journal-title":"J. Immunol."},{"key":"10.1074\/mcp.M600282-MCP200_bib15","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1093\/nar\/29.1.123","article-title":"The comprehensive microbial resource","volume":"29","author":"Peterson","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib16","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1021\/pr0498638","article-title":"Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome","volume":"4","author":"Qian","year":"2005","journal-title":"J. Proteome Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib17","doi-asserted-by":"crossref","first-page":"572","DOI":"10.1002\/pmic.200400942","article-title":"Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry","volume":"5","author":"Qian","year":"2005","journal-title":"Proteomics"},{"key":"10.1074\/mcp.M600282-MCP200_bib18","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1021\/pr025556v","article-title":"Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC\/LC-MS\/MS) for large-scale protein analysis: the yeast proteome","volume":"2","author":"Peng","year":"2003","journal-title":"J. Proteome Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib19","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1093\/nar\/27.1.39","article-title":"The PIR-International Protein Sequence Database","volume":"27","author":"Barker","year":"1999","journal-title":"Nucleic Acids Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib20","doi-asserted-by":"crossref","first-page":"692","DOI":"10.1016\/S1044-0305(98)00037-3","article-title":"Electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry at 11.5 tesla: instrument design and initial results","volume":"9","author":"Gorshkov","year":"1998","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"10.1074\/mcp.M600282-MCP200_bib21","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1109\/MCG.2004.40","article-title":"Visual analytics in the pharmaceutical industry","volume":"24","author":"Saffer","year":"2004","journal-title":"IEEE Comput. Graph Appl."},{"key":"10.1074\/mcp.M600282-MCP200_bib22","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1016\/S0092-8674(00)81003-X","article-title":"Mg2+ as an extracellular signal: environmental regulation of Salmonella virulence","volume":"84","author":"Garcia Vescovi","year":"1996","journal-title":"Cell"},{"key":"10.1074\/mcp.M600282-MCP200_bib23","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1128\/JB.181.3.799-807.1999","article-title":"Coordinate intracellular expression of Salmonella genes induced during infection","volume":"181","author":"Heithoff","year":"1999","journal-title":"J. Bacteriol."},{"key":"10.1074\/mcp.M600282-MCP200_bib24","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1128\/IAI.73.2.712-721.2005","article-title":"HtrA stress protein is involved in intramacrophagic replication of adherent and invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease","volume":"73","author":"Bringer","year":"2005","journal-title":"Infect. Immun."},{"key":"10.1074\/mcp.M600282-MCP200_bib25","series-title":"Protein Purification: Principles and Practice","first-page":"85","author":"Scopes","year":"1994"},{"key":"10.1074\/mcp.M600282-MCP200_bib26","series-title":"Protein Sequencing and Identification Using Tandem Mass Spectrometry","first-page":"29","author":"Kinter","year":"2000"},{"key":"10.1074\/mcp.M600282-MCP200_bib27","doi-asserted-by":"crossref","first-page":"D154","DOI":"10.1093\/nar\/gki070","article-title":"The Universal Protein Resource (UniProt)","volume":"33","author":"Bairoch","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib28","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1146\/annurev.genet.38.072902.091347","article-title":"rRNA transcription in Escherichia coli","volume":"38","author":"Paul","year":"2004","journal-title":"Annu. Rev. Genet."},{"key":"10.1074\/mcp.M600282-MCP200_bib29","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1016\/j.cell.2005.05.030","article-title":"Recognition of antimicrobial peptides by a bacterial sensor kinase","volume":"122","author":"Bader","year":"2005","journal-title":"Cell"},{"key":"10.1074\/mcp.M600282-MCP200_bib30","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1016\/j.femsre.2005.03.005","article-title":"Salmonella stress management and its relevance to behaviour during intestinal colonisation and infection","volume":"29","author":"Rychlik","year":"2005","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1074\/mcp.M600282-MCP200_bib31","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1038\/nrmicro1088","article-title":"DNA supercoiling\u2013a global transcriptional regulator for enterobacterial growth?","volume":"3","author":"Travers","year":"2005","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib32","doi-asserted-by":"crossref","first-page":"6253","DOI":"10.1128\/JB.187.18.6253-6254.2005","article-title":"Universal stress proteins in Escherichia coli","volume":"187","author":"Siegele","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1074\/mcp.M600282-MCP200_bib33","doi-asserted-by":"crossref","first-page":"3431","DOI":"10.1101\/gad.12.21.3431","article-title":"Bacterial senescence: stasis results in increased and differential oxidation of cytoplasmic proteins leading to developmental induction of the heat shock regulon","volume":"12","author":"Dukan","year":"1998","journal-title":"Genes Dev."},{"key":"10.1074\/mcp.M600282-MCP200_bib34","doi-asserted-by":"crossref","first-page":"730","DOI":"10.1126\/science.1970672","article-title":"Induction of Salmonella stress proteins upon infection of macrophages","volume":"248","author":"Buchmeier","year":"1990","journal-title":"Science"},{"key":"10.1074\/mcp.M600282-MCP200_bib35","doi-asserted-by":"crossref","first-page":"45041","DOI":"10.1074\/jbc.R300031200","article-title":"Degradation of stable RNA in bacteria","volume":"278","author":"Deutscher","year":"2003","journal-title":"J. Biol. Chem."},{"key":"10.1074\/mcp.M600282-MCP200_bib36","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1093\/nar\/gkj472","article-title":"Degradation of RNA in bacteria: comparison of mRNA and stable RNA","volume":"34","author":"Deutscher","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"10.1074\/mcp.M600282-MCP200_bib37","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1046\/j.1365-2443.1998.00187.x","article-title":"Growth phase coupled modulation of Escherichia coli ribosomes","volume":"3","author":"Wada","year":"1998","journal-title":"Genes Cells"},{"key":"10.1074\/mcp.M600282-MCP200_bib38","doi-asserted-by":"crossref","first-page":"10575","DOI":"10.1016\/S0021-9258(19)86554-7","article-title":"Site of action of RNase I on the 50 S ribosome of Escherichia coli and the association of the enzyme with the partially degraded subunit","volume":"254","author":"Raziuddin","year":"1979","journal-title":"J. Biol. Chem."},{"key":"10.1074\/mcp.M600282-MCP200_bib39","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1271\/bbb.70.325","article-title":"A polyphosphate-lon protease complex in the adaptation of Escherichia coli to amino acid starvation","volume":"70","author":"Kuroda","year":"2006","journal-title":"Biosci. Biotechnol. Biochem."},{"key":"10.1074\/mcp.M600282-MCP200_bib40","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1007\/BF00322462","article-title":"The phenotypic suppression of a mutation in the gene rplX for ribosomal protein L24 by mutations affecting the lon gene product for protease LA in Escherichia coli K12","volume":"212","author":"Nishi","year":"1988","journal-title":"Mol. Gen. Genet."},{"key":"10.1074\/mcp.M600282-MCP200_bib41","doi-asserted-by":"crossref","first-page":"6846","DOI":"10.1016\/j.febslet.2005.11.026","article-title":"Cleavage mechanism of ATP-dependent Lon protease toward ribosomal S2 protein","volume":"579","author":"Nishii","year":"2005","journal-title":"FEBS Lett."},{"key":"10.1074\/mcp.M600282-MCP200_bib42","doi-asserted-by":"crossref","first-page":"3080","DOI":"10.1021\/bi00554a038","article-title":"Analysis of cosolvent and divalent cation effects on association equilibrium and activity of ribosomes","volume":"19","author":"Hoa","year":"1980","journal-title":"Biochemistry"},{"key":"10.1074\/mcp.M600282-MCP200_bib43","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1126\/science.289.5481.905","article-title":"The complete atomic structure of the large ribosomal subunit at 2.4 A resolution","volume":"289","author":"Ban","year":"2000","journal-title":"Science"},{"key":"10.1074\/mcp.M600282-MCP200_bib44","doi-asserted-by":"crossref","first-page":"827","DOI":"10.1126\/science.1117230","article-title":"Structures of the bacterial ribosome at 3.5 A resolution","volume":"310","author":"Schuwirth","year":"2005","journal-title":"Science"},{"key":"10.1074\/mcp.M600282-MCP200_bib45","first-page":"161","article-title":"Intrinsic protein disorder in complete genomes","volume":"11","author":"Dunker","year":"2000","journal-title":"Genome Inform. Ser. Workshop Genome Inform."},{"key":"10.1074\/mcp.M600282-MCP200_bib46","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1002\/jmr.747","article-title":"Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling","volume":"18","author":"Uversky","year":"2005","journal-title":"J. Mol. Recognit."},{"key":"10.1074\/mcp.M600282-MCP200_bib47","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1128\/jb.165.1.193-197.1986","article-title":"Isolation and characterization of lon mutants in Salmonella typhimurium","volume":"165","author":"Downs","year":"1986","journal-title":"J. Bacteriol."},{"key":"10.1074\/mcp.M600282-MCP200_bib48","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1146\/annurev.genet.30.1.465","article-title":"Proteases and their targets in Escherichia coli","volume":"30","author":"Gottesman","year":"1996","journal-title":"Annu. Rev. Genet"},{"key":"10.1074\/mcp.M600282-MCP200_bib49","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1046\/j.1365-2958.1996.1231493.x","article-title":"Degradation by proteases Lon, Clp and HtrA, of Escherichia coli proteins aggregated in vivo by heat shock; HtrA protease action in vivo and in vitro","volume":"22","author":"Laskowska","year":"1996","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib50","doi-asserted-by":"crossref","first-page":"4207","DOI":"10.1128\/JB.187.12.4207-4213.2005","article-title":"Defense against protein carbonylation by DnaK\/DnaJ and proteases of the heat shock regulon","volume":"187","author":"Fredriksson","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1074\/mcp.M600282-MCP200_bib51","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1016\/j.jbiotec.2005.04.006","article-title":"Lon and ClpP proteases participate in the physiological disintegration of bacterial inclusion bodies","volume":"119","author":"Vera","year":"2005","journal-title":"J. Biotechnol."},{"key":"10.1074\/mcp.M600282-MCP200_bib52","doi-asserted-by":"crossref","first-page":"4761","DOI":"10.1128\/jb.176.15.4761-4765.1994","article-title":"Degradation of rRNA in Salmonella strains: a novel mechanism to regulate the concentrations of rRNA and ribosomes","volume":"176","author":"Hsu","year":"1994","journal-title":"J. Bacteriol."},{"key":"10.1074\/mcp.M600282-MCP200_bib53","doi-asserted-by":"crossref","first-page":"705","DOI":"10.1126\/science.1061315","article-title":"Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli","volume":"293","author":"Kuroda","year":"2001","journal-title":"Science"},{"key":"10.1074\/mcp.M600282-MCP200_bib54","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/S0022-2836(03)00725-3","article-title":"Evidence of a thermal unfolding dimeric intermediate for the Escherichia coli histone-like HU proteins: thermodynamics and structure","volume":"331","author":"Ramstein","year":"2003","journal-title":"J. Mol. Biol."},{"key":"10.1074\/mcp.M600282-MCP200_bib55","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1042\/BJ20050453","article-title":"H-NS is a part of a thermally controlled mechanism for bacterial gene regulation","volume":"391","author":"Ono","year":"2005","journal-title":"Biochem. J."},{"key":"10.1074\/mcp.M600282-MCP200_bib56","doi-asserted-by":"crossref","first-page":"7691","DOI":"10.1073\/pnas.86.20.7691","article-title":"Lon-dependent regulation of the DNA binding protein HU in Escherichia coli","volume":"86","author":"Bonnefoy","year":"1989","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1074\/mcp.M600282-MCP200_bib57","doi-asserted-by":"crossref","first-page":"10776","DOI":"10.1073\/pnas.96.19.10776","article-title":"Differential protease-mediated turnover of H-NS and StpA revealed by a mutation altering protein stability and stationary-phase survival of Escherichia coli","volume":"96","author":"Johansson","year":"1999","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1074\/mcp.M600282-MCP200_bib58","doi-asserted-by":"crossref","first-page":"1364","DOI":"10.1111\/j.1365-2958.2004.04353.x","article-title":"The ATP-dependent ClpXP and Lon proteases regulate expression of the Yersinia pestis type III secretion system via regulated proteolysis of YmoA, a small histone-like protein","volume":"54","author":"Jackson","year":"2004","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib59","doi-asserted-by":"crossref","first-page":"2002","DOI":"10.1128\/IAI.72.4.2002-2013.2004","article-title":"Lon protease activity causes down-regulation of Salmonella pathogenicity island 1 invasion gene expression after infection of epithelial cells","volume":"72","author":"Boddicker","year":"2004","journal-title":"Infect. Immun."},{"key":"10.1074\/mcp.M600282-MCP200_bib60","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1111\/j.1365-2958.2004.04425.x","article-title":"Degradation of the HilC and HilD regulator proteins by ATP-dependent Lon protease leads to downregulation of Salmonella pathogenicity island 1 gene expression","volume":"55","author":"Takaya","year":"2005","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib61","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1128\/IAI.71.2.690-696.2003","article-title":"Lon, a stress-induced ATP-dependent protease, is critically important for systemic Salmonella enterica serovar typhimurium infection of mice","volume":"71","author":"Takaya","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1074\/mcp.M600282-MCP200_bib62","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1016\/j.sbi.2005.03.005","article-title":"A cradle for new proteins: trigger factor at the ribosome","volume":"15","author":"Maier","year":"2005","journal-title":"Curr. Opin. Struct. Biol."},{"key":"10.1074\/mcp.M600282-MCP200_bib63","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1016\/S0092-8674(02)00619-0","article-title":"Ribosome structure and the mechanism of translation","volume":"108","author":"Ramakrishnan","year":"2002","journal-title":"Cell"},{"key":"10.1074\/mcp.M600282-MCP200_bib64","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1146\/annurev.micro.58.030603.123818","article-title":"Stationary-phase physiology","volume":"58","author":"Nystrom","year":"2004","journal-title":"Annu. Rev. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib65","doi-asserted-by":"crossref","first-page":"3027","DOI":"10.1074\/jbc.273.5.3027","article-title":"Identification of the major oxidatively damaged proteins in Escherichia coli cells exposed to oxidative stress","volume":"273","author":"Tamarit","year":"1998","journal-title":"J. Biol. Chem."},{"key":"10.1074\/mcp.M600282-MCP200_bib66","doi-asserted-by":"crossref","first-page":"26027","DOI":"10.1074\/jbc.274.37.26027","article-title":"Oxidative stress defense and deterioration of growth-arrested Escherichia coli cells","volume":"274","author":"Dukan","year":"1999","journal-title":"J. Biol. Chem."},{"key":"10.1074\/mcp.M600282-MCP200_bib67","doi-asserted-by":"crossref","first-page":"2727","DOI":"10.1099\/00221287-148-9-2727","article-title":"ClpP is involved in the stress response and degradation of misfolded proteins in Salmonella enterica serovar typhimurium","volume":"148","author":"Thomsen","year":"2002","journal-title":"Microbiology"},{"key":"10.1074\/mcp.M600282-MCP200_bib68","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1046\/j.1365-2958.1997.5601928.x","article-title":"The HtrA family of serine proteases","volume":"26","author":"Pallen","year":"1997","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib69","doi-asserted-by":"crossref","first-page":"1057","DOI":"10.1111\/j.1462-5822.2004.00418.x","article-title":"Identification of Salmonella typhimurium genes responsible for interference with peptide presentation on MHC class I molecules: Deltayej Salmonella mutants induce superior CD8+ T-cell responses","volume":"6","author":"Qimron","year":"2004","journal-title":"Cell Micro biol."},{"key":"10.1074\/mcp.M600282-MCP200_bib70","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1086\/426945","article-title":"Genomewide analysis of gene expression in Staphylococcus epidermidis biofilms: insights into the pathophysiology of S. epidermidis biofilms and the role of phenol-soluble modulins in formation of biofilms","volume":"191","author":"Yao","year":"2005","journal-title":"J. Infect. Dis."},{"key":"10.1074\/mcp.M600282-MCP200_bib71","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1038\/19439","article-title":"Antibacterial peptide from H. pylori","volume":"398","author":"Putsep","year":"1999","journal-title":"Nature"},{"key":"10.1074\/mcp.M600282-MCP200_bib72","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1111\/j.1365-2958.2004.04054.x","article-title":"Cell-to-cell signalling in Escherichia coli and Salmonella enterica","volume":"52","author":"Ahmer","year":"2004","journal-title":"Mol. Microbiol."},{"key":"10.1074\/mcp.M600282-MCP200_bib73","doi-asserted-by":"crossref","first-page":"867","DOI":"10.1038\/nature05233","article-title":"A linguistic model for the rational design of antimicrobial peptides","volume":"443","author":"Loose","year":"2006","journal-title":"Nature"},{"key":"10.1074\/mcp.M600282-MCP200_bib74","doi-asserted-by":"crossref","first-page":"29131","DOI":"10.1074\/jbc.M604640200","article-title":"Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages","volume":"281","author":"Shi","year":"2006","journal-title":"J. Biol. Chem."}],"container-title":["Molecular &amp; Cellular Proteomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1535947620317503?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1535947620317503?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1074\/mcp.M600282-MCP200","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T00:30:12Z","timestamp":1761525012000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1535947620317503"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,4]]},"references-count":74,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2007,4]]}},"alternative-id":["S1535947620317503"],"URL":"https:\/\/doi.org\/10.1074\/mcp.m600282-mcp200","relation":{},"ISSN":["1535-9476"],"issn-type":[{"value":"1535-9476","type":"print"}],"subject":[],"published":{"date-parts":[[2007,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Targeted Protein Degradation by Salmonella under Phagosome-mimicking Culture Conditions Investigated Using Comparative Peptidomics","name":"articletitle","label":"Article Title"},{"value":"Molecular & Cellular Proteomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1074\/mcp.M600282-MCP200","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2007 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.","name":"copyright","label":"Copyright"}]}}