{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,10]],"date-time":"2026-06-10T16:21:26Z","timestamp":1781108486388,"version":"3.54.1"},"reference-count":95,"publisher":"Informa UK Limited","issue":"1","license":[{"start":{"date-parts":[[2025,11,24]],"date-time":"2025-11-24T00:00:00Z","timestamp":1763942400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"Pack ambition recherche"}],"content-domain":{"domain":["www.tandfonline.com"],"crossmark-restriction":true},"short-container-title":["Gut Microbes"],"published-print":{"date-parts":[[2025,12,31]]},"DOI":"10.1080\/19490976.2025.2579353","type":"journal-article","created":{"date-parts":[[2025,11,24]],"date-time":"2025-11-24T08:30:59Z","timestamp":1763973059000},"update-policy":"https:\/\/doi.org\/10.1080\/tandf_crossmark_01","source":"Crossref","is-referenced-by-count":2,"title":["Small intestine is not colon: a new\n                    <i>in vitro<\/i>\n                    model of the human ileum microbiome integrating the mucosal microenvironment and feeding status"],"prefix":"10.1080","volume":"17","author":[{"given":"Auriane","family":"Bron","sequence":"first","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"Center for Microbial Ecology and Technology (CMET), Department of Biotechnology","place":["Ghent, Belgium"]},{"name":"Ghent University","place":["Ghent, Belgium"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chlo\u00e9","family":"Beltramo","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"Center for Microbial Ecology and Technology (CMET), Department of Biotechnology","place":["Ghent, Belgium"]},{"name":"Ghent University","place":["Ghent, Belgium"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claude","family":"Durif","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Trisha","family":"Arora","sequence":"additional","affiliation":[{"name":"Eurecat, Technology Center of Catalonia","place":["Reus, Spain"]},{"name":"Department of Electrical, Electronic and Control Engineering (DEEEA)","place":["Tarragona, Spain"]},{"name":"Universitat Rovira i Virgili","place":["Tarragona, Spain"]},{"name":"Centre for Omics Sciences (COS), Eurecat - Technology Centre of Catalonia, Rovira i Virgili University Joint Unit, Unique Scientific and Technical Infrastructures (ICTS)","place":["Reus, Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Charlotte","family":"Deschamps","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ingrid","family":"Couturier","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xavier","family":"Domingo-Almenara","sequence":"additional","affiliation":[{"name":"Eurecat, Technology Center of Catalonia","place":["Reus, Spain"]},{"name":"Department of Electrical, Electronic and Control Engineering (DEEEA)","place":["Tarragona, Spain"]},{"name":"Universitat Rovira i Virgili","place":["Tarragona, Spain"]},{"name":"Centre for Omics Sciences (COS), Eurecat - Technology Centre of Catalonia, Rovira i Virgili University Joint Unit, Unique Scientific and Technical Infrastructures (ICTS)","place":["Reus, Spain"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yolanda F.","family":"Otero","sequence":"additional","affiliation":[{"name":"Valbiotis Research & Development Riom Center","place":["Riom, France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylvain","family":"Denis","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6854-5689","authenticated-orcid":false,"given":"Tom","family":"Van de Wiele","sequence":"additional","affiliation":[{"name":"Center for Microbial Ecology and Technology (CMET), Department of Biotechnology","place":["Ghent, Belgium"]},{"name":"Ghent University","place":["Ghent, Belgium"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phanie","family":"Blanquet-Diot","sequence":"additional","affiliation":[{"name":"UMR 454 MEDIS UCA-INRAE, Microbiology, Digestive Environment and Health","place":["Clermont-Ferrand, France"]},{"name":"Universit\u00e9 Clermont Auvergne","place":["Clermont-Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ferrand, France"]},{"name":"International Associated Laboratory Host Microbes Interactions in the Human Gut (HOMIGUT)","place":["Ghent, Belgium"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"301","published-online":{"date-parts":[[2025,11,24]]},"reference":[{"key":"e_1_3_5_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuad022"},{"key":"e_1_3_5_3_1","volume-title":"Les aliments dans le tube digestif","author":"Bernier J-J","year":"1988","unstructured":"Bernier J-J. Les aliments dans le tube digestif. Paris: Doin Editeurs; 1988."},{"key":"e_1_3_5_4_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.nephro.2017.02.014"},{"key":"e_1_3_5_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2022.10.002"},{"key":"e_1_3_5_6_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00018-011-0822-3"},{"key":"e_1_3_5_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2019.08.011"},{"key":"e_1_3_5_8_1","doi-asserted-by":"publisher","DOI":"10.1136\/gut.28.10.1221"},{"key":"e_1_3_5_9_1","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11030573"},{"key":"e_1_3_5_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2020.104104"},{"key":"e_1_3_5_11_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-23198-5"},{"key":"e_1_3_5_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jcmgh.2019.07.006"},{"key":"e_1_3_5_13_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiz096"},{"key":"e_1_3_5_14_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsle\/fny231"},{"key":"e_1_3_5_15_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-020-00860-x"},{"key":"e_1_3_5_16_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.1054061"},{"key":"e_1_3_5_17_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-020-10959-4"},{"key":"e_1_3_5_18_1","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.04344-22"},{"key":"e_1_3_5_19_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-022-12199-0"},{"key":"e_1_3_5_20_1","doi-asserted-by":"publisher","DOI":"10.1002\/bit.20347"},{"key":"e_1_3_5_21_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.mimet.2011.06.010"},{"key":"e_1_3_5_22_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks808"},{"key":"e_1_3_5_23_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.66.11.5066-5072.2000"},{"key":"e_1_3_5_24_1","doi-asserted-by":"publisher","DOI":"10.12688\/f1000research.27268.1"},{"key":"e_1_3_5_25_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3869"},{"key":"e_1_3_5_26_1","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-018-0521-5"},{"key":"e_1_3_5_27_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1219"},{"key":"e_1_3_5_28_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq706"},{"key":"e_1_3_5_29_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-031-44256-8_6"},{"key":"e_1_3_5_30_1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.analchem.6b02927"},{"key":"e_1_3_5_31_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsec\/fiaa255"},{"key":"e_1_3_5_32_1","doi-asserted-by":"publisher","DOI":"10.1172\/JCI103549"},{"key":"e_1_3_5_33_1","doi-asserted-by":"publisher","DOI":"10.1136\/gut.29.8.1035"},{"key":"e_1_3_5_34_1","doi-asserted-by":"publisher","DOI":"10.1023\/A:1018893409596"},{"key":"e_1_3_5_35_1","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2021.618411"},{"key":"e_1_3_5_36_1","doi-asserted-by":"publisher","DOI":"10.1002\/jps.24274"},{"key":"e_1_3_5_37_1","doi-asserted-by":"publisher","DOI":"10.3390\/nu14010180"},{"key":"e_1_3_5_38_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2010.02294.x"},{"key":"e_1_3_5_39_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ejpb.2021.04.005"},{"key":"e_1_3_5_40_1","doi-asserted-by":"publisher","DOI":"10.5604\/01.3001.0010.5493"},{"key":"e_1_3_5_41_1","doi-asserted-by":"publisher","DOI":"10.1136\/gut.14.7.513"},{"key":"e_1_3_5_42_1","doi-asserted-by":"publisher","DOI":"10.1002\/jps.24603"},{"key":"e_1_3_5_43_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmet.2013.03.013"},{"key":"e_1_3_5_44_1","doi-asserted-by":"publisher","DOI":"10.1097\/MCG.0000000000001333"},{"key":"e_1_3_5_45_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.212"},{"key":"e_1_3_5_46_1","doi-asserted-by":"publisher","DOI":"10.1111\/apt.14923"},{"key":"e_1_3_5_47_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41575-019-0193-z"},{"key":"e_1_3_5_48_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.isci.2024.109208"},{"key":"e_1_3_5_49_1","doi-asserted-by":"publisher","DOI":"10.1177\/2050640619852255"},{"key":"e_1_3_5_50_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.femsec.2005.03.012"},{"key":"e_1_3_5_51_1","doi-asserted-by":"publisher","DOI":"10.1590\/S1807-59322007000100008"},{"key":"e_1_3_5_52_1","doi-asserted-by":"publisher","DOI":"10.1159\/000524023"},{"key":"e_1_3_5_53_1","doi-asserted-by":"publisher","DOI":"10.1159\/000496102"},{"key":"e_1_3_5_54_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-023-05989-7"},{"key":"e_1_3_5_55_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2023.2201155"},{"key":"e_1_3_5_56_1","unstructured":"EN - EUR-Lex. n.d. Directive - 2010\/63."},{"key":"e_1_3_5_57_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2024.02.013"},{"key":"e_1_3_5_58_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2015.1044711"},{"key":"e_1_3_5_59_1","doi-asserted-by":"publisher","DOI":"10.4014\/jmb.1908.08037"},{"key":"e_1_3_5_60_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-023-12987-2"},{"key":"e_1_3_5_61_1","doi-asserted-by":"publisher","DOI":"10.1186\/s40104-021-00584-0"},{"key":"e_1_3_5_62_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-009-1947-2"},{"key":"e_1_3_5_63_1","doi-asserted-by":"publisher","DOI":"10.1136\/gutjnl-2020-322260"},{"key":"e_1_3_5_64_1","doi-asserted-by":"publisher","DOI":"10.1111\/mmi.15116"},{"key":"e_1_3_5_65_1","doi-asserted-by":"publisher","DOI":"10.1177\/0022034517752675"},{"key":"e_1_3_5_66_1","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.13589"},{"key":"e_1_3_5_67_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2022.130010"},{"key":"e_1_3_5_68_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-023-00969-0"},{"key":"e_1_3_5_69_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuz013"},{"key":"e_1_3_5_70_1","doi-asserted-by":"publisher","DOI":"10.1038\/srep40248"},{"key":"e_1_3_5_71_1","doi-asserted-by":"publisher","DOI":"10.1038\/s42255-023-00777-z"},{"key":"e_1_3_5_72_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41928-017-0004-x"},{"key":"e_1_3_5_73_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.freeradbiomed.2012.10.554"},{"key":"e_1_3_5_74_1","doi-asserted-by":"publisher","DOI":"10.1016\/0016-5085(93)90129-Z"},{"key":"e_1_3_5_75_1","doi-asserted-by":"publisher","DOI":"10.3748\/wjg.v20.i43.16062"},{"key":"e_1_3_5_76_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41575-022-00673-z"},{"key":"e_1_3_5_77_1","doi-asserted-by":"publisher","DOI":"10.1136\/gut.37.3.418"},{"key":"e_1_3_5_78_1","doi-asserted-by":"publisher","DOI":"10.1128\/mbio.00824-17"},{"key":"e_1_3_5_79_1","doi-asserted-by":"publisher","DOI":"10.3390\/metabo11060406"},{"key":"e_1_3_5_80_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2023.2172671"},{"key":"e_1_3_5_81_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0804437105"},{"key":"e_1_3_5_82_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00394-017-1445-8"},{"key":"e_1_3_5_83_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.xcrm.2023.101190"},{"key":"e_1_3_5_84_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.it.2020.04.005"},{"key":"e_1_3_5_85_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12986-021-00635-3"},{"key":"e_1_3_5_86_1","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.02873-0"},{"key":"e_1_3_5_87_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.clnu.2022.08.029"},{"key":"e_1_3_5_88_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.therap.2017.01.001"},{"key":"e_1_3_5_89_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuac008"},{"key":"e_1_3_5_90_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.foodres.2023.113292"},{"key":"e_1_3_5_91_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2016.13"},{"key":"e_1_3_5_92_1","doi-asserted-by":"publisher","DOI":"10.3390\/nu13093188"},{"key":"e_1_3_5_93_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cgh.2024.06.022"},{"key":"e_1_3_5_94_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.710940"},{"key":"e_1_3_5_95_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.metabol.2023.155712"},{"key":"e_1_3_5_96_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00216-017-0493-5"}],"container-title":["Gut Microbes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.tandfonline.com\/doi\/pdf\/10.1080\/19490976.2025.2579353","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,19]],"date-time":"2025-12-19T02:35:40Z","timestamp":1766111740000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.tandfonline.com\/doi\/full\/10.1080\/19490976.2025.2579353"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11,24]]},"references-count":95,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2025,12,31]]}},"alternative-id":["10.1080\/19490976.2025.2579353"],"URL":"https:\/\/doi.org\/10.1080\/19490976.2025.2579353","relation":{},"ISSN":["1949-0976","1949-0984"],"issn-type":[{"value":"1949-0976","type":"print"},{"value":"1949-0984","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11,24]]},"assertion":[{"value":"The publishing and review policy for this title is described in its Aims & Scope.","order":1,"name":"peerreview_statement","label":"Peer Review Statement"},{"value":"http:\/\/www.tandfonline.com\/action\/journalInformation?show=aimsScope&journalCode=kgmi20","URL":"http:\/\/www.tandfonline.com\/action\/journalInformation?show=aimsScope&journalCode=kgmi20","order":2,"name":"aims_and_scope_url","label":"Aim & Scope"},{"value":"2025-03-24","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-09-29","order":1,"name":"revised","label":"Revised","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-10-20","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-11-24","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"2579353"}}