{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T06:58:46Z","timestamp":1793343526549,"version":"4.5.0"},"reference-count":48,"publisher":"Informa UK Limited","issue":"1","license":[{"start":{"date-parts":[[2026,9,2]],"date-time":"2026-09-02T00:00:00Z","timestamp":1788307200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2026,9,2]],"date-time":"2026-09-02T00:00:00Z","timestamp":1788307200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/doi.org\/10.1080\/policies-text-data-mining"}],"funder":[{"DOI":"10.13039\/100000011","name":"Howard Hughes Medical Institute","doi-asserted-by":"publisher","award":["GT17584"],"award-info":[{"award-number":["GT17584"]}],"id":[{"id":"10.13039\/100000011","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000054","name":"National Cancer Institute","doi-asserted-by":"publisher","award":["U54CA272220"],"award-info":[{"award-number":["U54CA272220"]}],"id":[{"id":"10.13039\/100000054","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100008460","name":"National Center for Complementary and Integrative Health","doi-asserted-by":"publisher","award":["R21AT013617"],"award-info":[{"award-number":["R21AT013617"]}],"id":[{"id":"10.13039\/100008460","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000062","name":"National Institute of Diabetes and Digestive and Kidney Diseases","doi-asserted-by":"publisher","award":["P30 DK120515"],"award-info":[{"award-number":["P30 DK120515"]}],"id":[{"id":"10.13039\/100000062","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R35GM142547"],"award-info":[{"award-number":["R35GM142547"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.tandfonline.com"],"crossmark-restriction":true},"short-container-title":["Gut Microbes"],"published-print":{"date-parts":[[2026,12,31]]},"DOI":"10.1080\/19490976.2026.2725403","type":"journal-article","created":{"date-parts":[[2026,9,2]],"date-time":"2026-09-02T11:10:16Z","timestamp":1788347416000},"update-policy":"https:\/\/doi.org\/10.1080\/tandf_crossmark_01","source":"Crossref","is-referenced-by-count":1,"title":["Metagenome-scale modeling to assess microbiome metabolic complementarity for precision microbiota transplantation therapies"],"prefix":"10.1080","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0009-0008-2405-8983","authenticated-orcid":false,"given":"Zetian","family":"Zhang","sequence":"first","affiliation":[{"name":"School of Biomedical Sciences, The University of Hong Kong","place":["Hong Kong SAR, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark","family":"Holton","sequence":"additional","affiliation":[{"name":"Department of Medicine, Division of Gastroenterology, University of California","place":["San Diego, USA"]},{"name":"Biomedical Sciences Graduate Program, University of California","place":["San Diego, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel M.","family":"Ferrer","sequence":"additional","affiliation":[{"name":"Department of Medicine, Division of Gastroenterology, University of California","place":["San Diego, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8611-7207","authenticated-orcid":false,"given":"Arielle D.","family":"Tripp","sequence":"additional","affiliation":[{"name":"Department of Epidemiology & Biostatistics, University of California San Francisco","place":["San Francisco, USA"]},{"name":"Institute of Data Science & Biotechnology, Gladstone Institutes","place":["San Francisco, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexander","family":"Richter","sequence":"additional","affiliation":[{"name":"Department of Medicine, Division of Gastroenterology, University of California","place":["San Diego, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3282-0866","authenticated-orcid":false,"given":"Purushottam D.","family":"Dixit","sequence":"additional","affiliation":[{"name":"Department of Biomedical Engineering, Yale University","place":["New Haven, USA"]},{"name":"Systems Biology Institute, Yale University","place":["New Haven, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1045-1721","authenticated-orcid":false,"given":"Guillaume","family":"Urtecho","sequence":"additional","affiliation":[{"name":"Department of Medicine, Division of Gastroenterology, University of California","place":["San Diego, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"301","published-online":{"date-parts":[[2026,9,2]]},"reference":[{"key":"e_1_3_7_2_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-017-01973-8"},{"key":"e_1_3_7_3_1","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa2106516"},{"key":"e_1_3_7_4_1","doi-asserted-by":"publisher","DOI":"10.1053\/j.gastro.2012.06.031"},{"key":"e_1_3_7_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.nutres.2020.06.018"},{"key":"e_1_3_7_6_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2023.03.020"},{"key":"e_1_3_7_7_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2024.2424914"},{"key":"e_1_3_7_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2018.01.003"},{"key":"e_1_3_7_9_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-022-01964-3"},{"key":"e_1_3_7_10_1","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-023-01623-w"},{"key":"e_1_3_7_11_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-022-01913-0"},{"key":"e_1_3_7_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.xcrm.2022.100711"},{"key":"e_1_3_7_13_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2025.2597628"},{"key":"e_1_3_7_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-023-00969-0"},{"key":"e_1_3_7_15_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3552"},{"key":"e_1_3_7_16_1","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.13659"},{"key":"e_1_3_7_17_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-018-0092-4"},{"key":"e_1_3_7_18_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2026.03.036"},{"key":"e_1_3_7_19_1","doi-asserted-by":"publisher","DOI":"10.1111\/ele.13954"},{"key":"e_1_3_7_20_1","doi-asserted-by":"publisher","DOI":"10.1128\/msystems.00606-19"},{"key":"e_1_3_7_21_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2025.2534673"},{"key":"e_1_3_7_22_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-024-01728-4"},{"key":"e_1_3_7_23_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2025.101367"},{"key":"e_1_3_7_24_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2024.10.007"},{"key":"e_1_3_7_25_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky537"},{"key":"e_1_3_7_26_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-025-01972-2"},{"key":"e_1_3_7_27_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature13827"},{"key":"e_1_3_7_28_1","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.1319"},{"key":"e_1_3_7_29_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-020-00834-3"},{"key":"e_1_3_7_30_1","doi-asserted-by":"publisher","DOI":"10.1053\/j.gastro.2020.04.014"},{"key":"e_1_3_7_31_1","doi-asserted-by":"publisher","DOI":"10.1097\/MD.0000000000014513"},{"key":"e_1_3_7_32_1","doi-asserted-by":"publisher","DOI":"10.14309\/ajg.0000000000001997"},{"key":"e_1_3_7_33_1","doi-asserted-by":"publisher","DOI":"10.1053\/j.gastro.2026.04.039"},{"key":"e_1_3_7_34_1","doi-asserted-by":"publisher","DOI":"10.1136\/gutjnl-2019-319630"},{"key":"e_1_3_7_35_1","doi-asserted-by":"publisher","DOI":"10.1016\/S2468-1253(19)30198-0"},{"key":"e_1_3_7_36_1","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2020.1794263"},{"key":"e_1_3_7_37_1","doi-asserted-by":"publisher","DOI":"10.1016\/S2468-1253(17)30338-2"},{"key":"e_1_3_7_38_1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.3703"},{"key":"e_1_3_7_39_1","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2019.00002"},{"key":"e_1_3_7_40_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.ady1729"},{"key":"e_1_3_7_41_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.aad8852"},{"key":"e_1_3_7_42_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2016.03.004"},{"key":"e_1_3_7_43_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.aat9076"},{"key":"e_1_3_7_44_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-021-00966-0"},{"key":"e_1_3_7_45_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-019-0559-3"},{"key":"e_1_3_7_46_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty560"},{"key":"e_1_3_7_47_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1891-0"},{"key":"e_1_3_7_48_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"e_1_3_7_49_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8"}],"container-title":["Gut Microbes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.tandfonline.com\/doi\/pdf\/10.1080\/19490976.2026.2725403","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.tandfonline.com\/doi\/full-xml\/10.1080\/19490976.2026.2725403","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/www.tandfonline.com\/doi\/pdf\/10.1080\/19490976.2026.2725403","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,2]],"date-time":"2026-09-02T11:10:18Z","timestamp":1788347418000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.tandfonline.com\/doi\/full\/10.1080\/19490976.2026.2725403"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,2]]},"references-count":48,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,12,31]]}},"alternative-id":["10.1080\/19490976.2026.2725403"],"URL":"https:\/\/doi.org\/10.1080\/19490976.2026.2725403","relation":{},"ISSN":["1949-0976","1949-0984"],"issn-type":[{"value":"1949-0976","type":"print"},{"value":"1949-0984","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,2]]},"assertion":[{"value":"The publishing and review policy for this title is described in its Aims & Scope.","order":1,"name":"peerreview_statement","label":"Peer Review Statement"},{"value":"http:\/\/www.tandfonline.com\/action\/journalInformation?show=aimsScope&journalCode=kgmi20","URL":"http:\/\/www.tandfonline.com\/action\/journalInformation?show=aimsScope&journalCode=kgmi20","order":2,"name":"aims_and_scope_url","label":"Aim & Scope"},{"value":"2026-05-01","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-08-03","order":1,"name":"revised","label":"Revised","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-08-24","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-09-02","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"2725403"}}