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Med. Biol."],"published-print":{"date-parts":[[2023,4,21]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    <jats:italic>Objective<\/jats:italic>\n                    . In radiotherapy, the internal movement of organs between treatment sessions causes errors in the final radiation dose delivery. To assess the need for adaptation, motion models can be used to simulate dominant motion patterns and assess anatomical robustness before delivery. Traditionally, such models are based on principal component analysis (PCA) and are either patient-specific (requiring several scans per patient) or population-based, applying the same set of deformations to all patients. We present a hybrid approach which, based on population data, allows to predict patient-specific inter-fraction variations for an individual patient.\n                    <jats:italic>Approach<\/jats:italic>\n                    . We propose a deep learning probabilistic framework that generates deformation vector fields warping a patient's planning computed tomography (CT) into possible patient-specific anatomies. This daily anatomy model (DAM) uses few random variables capturing groups of correlated movements. Given a new planning CT, DAM estimates the joint distribution over the variables, with each sample from the distribution corresponding to a different deformation. We train our model using dataset of 312 CT pairs with prostate, bladder, and rectum delineations from 38 prostate cancer patients. For 2 additional patients (22 CTs), we compute the contour overlap between real and generated images, and compare the sampled and \u2018ground truth\u2019 distributions of volume and center of mass changes.\n                    <jats:italic>Results<\/jats:italic>\n                    . With a DICE score of 0.86 \u00b1 0.05 and a distance between prostate contours of 1.09 \u00b1 0.93 mm, DAM matches and improves upon previously published PCA-based models, using as few as 8 latent variables. The overlap between distributions further indicates that DAM\u2019s sampled movements match the range and frequency of clinically observed daily changes on repeat CTs.\n                    <jats:italic>Significance<\/jats:italic>\n                    . Conditioned only on planning CT values and organ contours of a new patient without any pre-processing, DAM can accurately deformations seen during following treatment sessions, enabling anatomically robust treatment planning and robustness evaluation against inter-fraction anatomical changes.\n                  <\/jats:p>","DOI":"10.1088\/1361-6560\/acc71d","type":"journal-article","created":{"date-parts":[[2023,3,23]],"date-time":"2023-03-23T18:42:28Z","timestamp":1679596948000},"page":"085018","update-policy":"https:\/\/doi.org\/10.1088\/crossmark-policy","source":"Crossref","is-referenced-by-count":14,"title":["A probabilistic deep learning model of inter-fraction anatomical variations in radiotherapy"],"prefix":"10.1088","volume":"68","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2328-1429","authenticated-orcid":true,"given":"Oscar","family":"Pastor-Serrano","sequence":"first","affiliation":[{"name":"Delft University of Technology"},{"name":"Stanford University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Steven","family":"Habraken","sequence":"additional","affiliation":[{"name":"Erasmus University Medical Center"},{"name":"Department of Medical Physics and Informatics"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mischa","family":"Hoogeman","sequence":"additional","affiliation":[{"name":"Erasmus University Medical Center"},{"name":"Department of Medical Physics and Informatics"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danny","family":"Lathouwers","sequence":"additional","affiliation":[{"name":"Delft University of Technology"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3199-5608","authenticated-orcid":true,"given":"Dennis","family":"Schaart","sequence":"additional","affiliation":[{"name":"Delft University of Technology"},{"name":"Department of Medical Physics and Informatics"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2180-568X","authenticated-orcid":true,"given":"Yusuke","family":"Nomura","sequence":"additional","affiliation":[{"name":"Stanford University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lei","family":"Xing","sequence":"additional","affiliation":[{"name":"Stanford University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0975-4226","authenticated-orcid":true,"given":"Zolt\u00e1n","family":"Perk\u00f3","sequence":"additional","affiliation":[{"name":"Delft University of Technology"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"266","published-online":{"date-parts":[[2023,4,10]]},"reference":[{"key":"pmbacc71dbib1","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1016\/S0360-3016(98)00248-X","type":"journal-article","article-title":"Prostate target volume variations during a course of radiotherapy","volume":"42","author":"Antolak","year":"1998","journal-title":"Int. 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