{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T20:06:53Z","timestamp":1791230813694,"version":"4.1.0"},"reference-count":70,"publisher":"SAGE Publications","issue":"1","license":[{"start":{"date-parts":[[2021,1,1]],"date-time":"2021-01-01T00:00:00Z","timestamp":1609459200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.sagepub.com\/page\/policies\/text-and-data-mining-license"}],"content-domain":{"domain":["journals.sagepub.com"],"crossmark-restriction":true},"short-container-title":["Microbial Drug Resistance"],"published-print":{"date-parts":[[2021,1]]},"abstract":"<jats:p>\n                    <jats:italic toggle=\"yes\">Salmonella enterica<\/jats:italic>\n                    serovars Heidelberg and Minnesota frequently display several genetic mobile elements making them potential spreaders of resistance genes. Here, we phenotypically determined the antibiotic resistance profile and subsequently performed whole-genome sequencing on 36 isolates recovered from samples of fresh poultry meat, within the Portuguese Official Inspection Plan for Imported Foodstuffs. Several isolates of both serovars showed high genetic relatedness either with isolates from raw poultry meat imported to the Netherlands from Brazil or with isolates from samples from the broiler production chain in Brazil. The multidrug-resistant (MDR) character was common to the vast majority (94.4%) of isolates from both serovars, and several isolates carried the plasmid IncA\/C2 containing the \u03b2-lactamase gene\n                    <jats:italic toggle=\"yes\">bla<\/jats:italic>\n                    <jats:sub>CMY-2<\/jats:sub>\n                    and IncX1 containing a type IV secretion system. These results somehow mirror the scenario observed in the Netherlands, showing the introduction, through fresh imported poultry meat in compliance with European legislation, of MDR\n                    <jats:italic toggle=\"yes\">Salmonella enterica<\/jats:italic>\n                    serovars Heidelberg and Minnesota in Europe, with the potential spread of resistance markers. These data suggest the need to revise the hygiene criteria for foodstuffs monitoring before its placement on the market, with the determination of the resistome being an invaluable contribute to limit the dissemination of resistance markers.\n                  <\/jats:p>","DOI":"10.1089\/mdr.2019.0384","type":"journal-article","created":{"date-parts":[[2020,5,27]],"date-time":"2020-05-27T22:43:51Z","timestamp":1590619431000},"page":"87-98","update-policy":"https:\/\/doi.org\/10.1177\/sage-journals-update-policy","source":"Crossref","is-referenced-by-count":26,"title":["Characterization of Multidrug-Resistant Isolates of\n                    <i>Salmonella enterica<\/i>\n                    Serovars Heidelberg and Minnesota from Fresh Poultry Meat Imported to Portugal"],"prefix":"10.1177","volume":"27","author":[{"given":"Leonor","family":"Silveira","sequence":"first","affiliation":[{"name":"National Reference Laboratory of Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexandra","family":"Nunes","sequence":"additional","affiliation":[{"name":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health (INSA), Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"\u00c2ngela","family":"Pista","sequence":"additional","affiliation":[{"name":"National Reference Laboratory of Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joana","family":"Isidro","sequence":"additional","affiliation":[{"name":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health (INSA), Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cristina","family":"Belo Correia","sequence":"additional","affiliation":[{"name":"Food Microbiology Laboratory, Reference Unit, Department of Food and Nutrition, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Margarida","family":"Saraiva","sequence":"additional","affiliation":[{"name":"Food Microbiology Laboratory, Reference Unit, Department of Food and Nutrition, National Institute of Health, Porto, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rita","family":"Batista","sequence":"additional","affiliation":[{"name":"Food Microbiology Laboratory, Reference Unit, Department of Food and Nutrition, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Isabel","family":"Castanheira","sequence":"additional","affiliation":[{"name":"Food Microbiology Laboratory, Reference Unit, Department of Food and Nutrition, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jorge","family":"Machado","sequence":"additional","affiliation":[{"name":"National Reference Laboratory of Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jo\u00e3o Paulo","family":"Gomes","sequence":"additional","affiliation":[{"name":"Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health (INSA), Lisbon, Portugal."}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"179","published-online":{"date-parts":[[2021,1,15]]},"reference":[{"key":"e_1_3_4_2_2","first-page":"Switzerland","article-title":"Antimicrobial resistance\u2014Global Report on Surveillance","author":"World Health Organization","year":"2014","unstructured":"World Health Organization. 2014. Antimicrobial resistance\u2014Global Report on Surveillance. WHO,, Geneva, Switzerland.","journal-title":"WHO,"},{"key":"e_1_3_4_3_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2011.03570.x"},{"key":"e_1_3_4_4_2","first-page":"277","article-title":"The Antibiotic Resistance Crisis Part 1: causes and Threats","volume":"40","author":"Ventola, C.L","year":"2015","unstructured":"Ventola, C.L. 2015. The Antibiotic Resistance Crisis Part 1: causes and Threats. Pharm. Ther. 40:277\u2013283.","journal-title":"Pharm. Ther"},{"key":"e_1_3_4_5_2","volume-title":"Salmonella enterica","author":"Monte D.F.","unstructured":"Monte D.F., , Lincopan N., , Berman H., , Cerdeira L., , Keelara S., , Thakur S., , Fedorka-Cray P.J, , and Landgraf M.. 2019. Genomic Features of High-Priority Salmonella enterica. Serovars Circulating in the Food Production Chain, Brazil, 2000\u20132016. Sci. Rep. 9: 1, 1058."},{"key":"e_1_3_4_6_2","unstructured":"European Centre for Disease Prevention and Control. 2018. Stockholm Annual epidemiological report for 2015 - Salmonellosis."},{"key":"e_1_3_4_7_2","doi-asserted-by":"crossref","first-page":"e0007187","DOI":"10.1371\/journal.pntd.0007187","article-title":"Increasing incidence of invasive nontyphoidal Salmonella infections in Queensland, Australia, 2007\u20132016","volume":"13","author":"Parisi A.","year":"2019","unstructured":"Parisi A., , Crump J.A, , Stafford R., , Glass K., , Howden B.P, , and Kirk M.D.. 2019. Increasing incidence of invasive nontyphoidal Salmonella infections in Queensland, Australia, 2007\u20132016. PLoS Negl. Trop. Dis. 13:e0007187.","journal-title":"PLoS Negl. Trop. Dis"},{"key":"e_1_3_4_8_2","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1086\/381580","article-title":"Hospitalizations and deaths due to Salmonella infections, FoodNet, 1996\u20131999","volume":"38","author":"Kennedy M.","year":"2004","unstructured":"Kennedy M., , Villar R., , Vugia D.J, , Rabatsky-ehr T., , Farley M.M, , Pass M., , Smith K., , Smith P., , Cieslak P.R, , Imhoff B., , and Griffin P.M.. 2004. Hospitalizations and deaths due to Salmonella infections, FoodNet, 1996\u20131999. Clin. Infect. Dis. 38:142\u2013148.","journal-title":"Clin. Infect. Dis"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2015.12.004"},{"key":"e_1_3_4_10_2","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1016\/j.vetmic.2019.04.004","article-title":"Longitudinal study reveals persistent environmental Salmonella Heidelberg in Brazilian broiler farms","volume":"233","author":"Voss-Rech D.","year":"2019","unstructured":"Voss-Rech D., , Kramer B., , Silva V.S, , Rebelatto R., , Abreu P.G, , Coldebella A., , and Vaz C.S.L. 2019. Longitudinal study reveals persistent environmental Salmonella Heidelberg in Brazilian broiler farms. Vet. Microbiol. 233:118\u2013123.","journal-title":"Vet. Microbiol"},{"key":"e_1_3_4_11_2","doi-asserted-by":"publisher","DOI":"10.3382\/ps\/peu081"},{"key":"e_1_3_4_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00015-13"},{"key":"e_1_3_4_13_2","first-page":"1","article-title":"Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens","volume":"10","author":"Dhanani A.S.","year":"2015","unstructured":"Dhanani A.S., , Block G., , Dewar K., , Forgetta V., , and Topp E.. 2015. Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. PLoS One, 10:1\u201324.","journal-title":"PLoS One"},{"key":"e_1_3_4_14_2","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1111\/1462-2920.12351","article-title":"A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain","volume":"16","author":"Aviv G.","year":"2014","unstructured":"Aviv G., , Tsyba K., , Steck N., , Cornelius A., , Rahav G., , Guntram A., , and Gal-mor O.. 2014. A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain. Environ. Microbiol. Rep. 16:977\u2013994.","journal-title":"Environ. Microbiol. Rep"},{"key":"e_1_3_4_15_2","first-page":"EO5077","article-title":"The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-Borne Outbreaks in 2016","volume":"15","author":"European Food Safety Authority & European Centre for Disease Prevention and Control","year":"2017","unstructured":"European Food Safety Authority & European Centre for Disease Prevention and Control. 2017. The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-Borne Outbreaks in 2016. EFSA J, 15:EO5077.","journal-title":"EFSA J"},{"key":"e_1_3_4_16_2","unstructured":"European Centre for Disease Prevention and Control. Surveillance Altas of Infectious Diseases. Available at https:\/\/atlas.ecdc.europa.eu\/public\/index.aspx. (Accessed January12 2020)"},{"key":"e_1_3_4_17_2","doi-asserted-by":"crossref","first-page":"e01919","DOI":"10.1128\/AAC.01919-16","article-title":"A Whole-genome sequencing approach to study cefoxitin-resistant Salmonella enterica Serovar Heidelberg isolates from various sources","volume":"61","author":"Edirmanasinghe R.","year":"2017","unstructured":"Edirmanasinghe R., , Finley R., , Parmley E.J, , Avery B.P, , Carson C., , Bekal S., , Golding G., , and Mulvey M.R.. 2017. A Whole-genome sequencing approach to study cefoxitin-resistant Salmonella enterica Serovar Heidelberg isolates from various sources. Antimicrob. Agents Chemother. 61:e01919-16.","journal-title":"Antimicrob. Agents Chemother"},{"key":"e_1_3_4_18_2","doi-asserted-by":"crossref","first-page":"184","DOI":"10.3389\/fvets.2017.00184","article-title":"Phenotypic and genotypic features of a Salmonella Heidelberg strain isolated in broilers in brazil and their possible association to antibiotics and short-chain organic acids resistance and susceptibility","volume":"4","author":"Santin E.","year":"2017","unstructured":"Santin E., , Hayashi R.M, , Wammes J.C, , Gonzalez-Esquerra R., , Carazzolle M.F, , C.C. de Melo Freire M., , Monzani P.S, , and da Cunha A.F.. 2017. Phenotypic and genotypic features of a Salmonella Heidelberg strain isolated in broilers in brazil and their possible association to antibiotics and short-chain organic acids resistance and susceptibility. Front. Vet. Sci. 4:184.","journal-title":"Front. Vet. Sci"},{"key":"e_1_3_4_19_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13099-018-0279-0","article-title":"Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies Enterica serovar Heidelberg","volume":"10","author":"Antony L.","year":"2018","unstructured":"Antony L., , Behr M., , Sockett D., , Miskim ins D., , Aulik N., , Christopher-Hennings J., , Nelson E., , Allard M.W, , and Scaria J.. 2018. Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies Enterica serovar Heidelberg. Gut Pathog. 10:1\u20139.","journal-title":"Gut Pathog"},{"key":"e_1_3_4_20_2","volume-title":"Salmonella enterica","author":"Castellanos L.R.","unstructured":"Castellanos L.R., , van der Graaf-van Bloois L., , Donado-Godoy P., , Le\u00f3n M., , Clavijo V., , Ar\u00e9valo A., , Bernal J.F, , Mevius D.J, , Wagenaar J.A, , Zomer A., , and Hordijk J.. 2018. Genomic Characterization Of Extended-Spectrum Cephalosporin-Resistant Salmonella enterica. In The Colombian Poultry Chain. Front. Microbiol. 9: , 2431."},{"key":"e_1_3_4_21_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fvets.2017.00156","article-title":"Characterization of a multidrug-resistant Salmonella enterica Serovar Heidelberg outbreak strain in commercial turkeys: colonization, transmission, and host transcriptional response","volume":"4","author":"Bearson B.L.","year":"2017","unstructured":"Bearson B.L., , Bearson S.M.D, , Looft T., , Cai G., , and Shippy D.C.. 2017. Characterization of a multidrug-resistant Salmonella enterica Serovar Heidelberg outbreak strain in commercial turkeys: colonization, transmission, and host transcriptional response. Front. Vet. Sci. 4:1\u20137.","journal-title":"Front. Vet. Sci"},{"key":"e_1_3_4_22_2","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1080\/03079457.2013.811465","article-title":"Antimicrobial resistance of Salmonella enterica Serovar Heidelberg isolated from poultry in Alberta","volume":"46","author":"Amand J.A.S.","year":"2013","unstructured":"Amand J.A.S., , Otto S.J.G, , Cassis R., , and Christianson C.B.A. 2013. Antimicrobial resistance of Salmonella enterica Serovar Heidelberg isolated from poultry in Alberta. Avian Pathol. 46:379\u2013386.","journal-title":"Avian Pathol"},{"key":"e_1_3_4_23_2","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/j.fm.2018.01.004","article-title":"Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica Serovar Heidelberg involved in foodborne outbreaks in Qu\u00e9bec","volume":"73","author":"Vincent C.","year":"2018","unstructured":"Vincent C., , Usongo V., , Berry C., , Tremblay D.M, , Moineau S., , Yousfi K., , Doualla-Bell F., , Fournier E., , Nadon C., , Goodridge L., , and Bekal S.. 2018. Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica Serovar Heidelberg involved in foodborne outbreaks in Qu\u00e9bec. Food Microbiol. 73:99\u2013110.","journal-title":"Food Microbiol"},{"key":"e_1_3_4_24_2","first-page":"515","volume":"50","author":"Mendon\u00e7a E.P.","year":"2019","unstructured":"Mendon\u00e7a E.P., , de Melo R.T, , Nalevaiko P.C, , Monteiro G.P, , Fonseca B.B, , Galv\u00e3o N.N, , Giombelli A., , and Rossi D.A.. 2019. Spread of the serotypes and antimicrobial resistance in strains of Salmonella spp. isolated from broiler. Braz. J. Microbiol. 50:515\u2013522.","journal-title":"Spread of the serotypes and antimicrobial resistance in strains of Salmonella spp. isolated from broiler. Braz. J. Microbiol"},{"key":"e_1_3_4_25_2","unstructured":"ISO 6579:2002. Microbiology of food and animal feeding stuffs\u2014horizontal method for the detection of Salmonella spp. International Organization for Standardization. Geneve Switzerland."},{"key":"e_1_3_4_26_2","first-page":"Switzerland","article-title":"Antigenic Formulae of the Salmonella Serovars","author":"Grimont P.A.D.","year":"2007","unstructured":"Grimont P.A.D., , and F.-X Weill. 2007. Antigenic Formulae of the Salmonella Serovars. WHO Collaborating Centre for Reference and Research on Salmonella,, Geneva, Switzerland.","journal-title":"WHO Collaborating Centre for Reference and Research on Salmonella,"},{"key":"e_1_3_4_27_2","unstructured":"The European Committee on Antimicrobial Susceptibility Testing. 2017. Disk Diffusion Method for Antimicrobial Susceptibility Testing Antimicrobial susceptibility testing EUCAST disk diffusion method. Available at https:\/\/www.eucast.org\/ast_of_bacteria\/disk_diffusion_implementation\/ (accessed May19 2020)."},{"key":"e_1_3_4_28_2","unstructured":"The European Committee on Antimicrobial Susceptibility Testing. 2018. The European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 8.0 2018. Available at https:\/\/eucast.org\/clinical_breakpoints\/ (accessed May19 2020)."},{"key":"e_1_3_4_29_2","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1155\/2019\/1860275","article-title":"Multidrug-resistant Salmonella enterica Serovar rissen clusters detected in azores archipelago, Portugal","volume":"2019","author":"Silveira L.","year":"2019","unstructured":"Silveira L., , Pinto M., , Isidro J., , \u00c2. Pista, Themudo P., , Vieira L., , Machado J., , and Gomes J.P.. 2019. Multidrug-resistant Salmonella enterica Serovar rissen clusters detected in azores archipelago, Portugal. Int. J. Genomics, 2019:9.","journal-title":"Int. J. Genomics"},{"key":"e_1_3_4_30_2","unstructured":"Machado M. J. Halkilahti A. Jaakkonen D. Silva I. Mendes Y. Nalbantoglu V. Borges M. Ramirez M. Rossi and J. Carri\u00e7o. INNUca - Reads Control and Assembly. Available at https:\/\/github.com\/B-UMMI\/INNUca."},{"key":"e_1_3_4_31_2","unstructured":"Andrews FastQC S.: a quality control tool for high throughput sequence data. (2010). Available at www.bioinformatics.babraham.ac.uk\/projects\/fastqc."},{"key":"e_1_3_4_32_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"e_1_3_4_33_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_4_34_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0112963"},{"key":"e_1_3_4_35_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-9-75"},{"key":"e_1_3_4_36_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep08365"},{"key":"e_1_3_4_37_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1226"},{"key":"e_1_3_4_38_2","unstructured":"Seemann T. mlst. Available at https:\/\/github.com\/tseemann\/mlst."},{"key":"e_1_3_4_39_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00323-15"},{"key":"e_1_3_4_40_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks261"},{"key":"e_1_3_4_41_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02412-14"},{"key":"e_1_3_4_42_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw387"},{"key":"e_1_3_4_43_2","unstructured":"Centre For Genomic Epidemiology. SPIFinder. Available at https:\/\/cge.cbs.dtu.dk\/services\/SPIFinder\/."},{"key":"e_1_3_4_44_2","doi-asserted-by":"crossref","first-page":"e1007261","DOI":"10.1371\/journal.pgen.1007261","article-title":"A genomic overview of the population structure of Salmonella","volume":"14","author":"Alikhan N.-F.","year":"2018","unstructured":"Alikhan N.-F., , Zhou Z., , Sergeant M.J, , and Achtman M.. 2018. A genomic overview of the population structure of Salmonella. PLoS Genet. 14:e1007261.","journal-title":"PLoS Genet"},{"key":"e_1_3_4_45_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.251678.119"},{"key":"e_1_3_4_46_2","doi-asserted-by":"crossref","first-page":"e0219795","DOI":"10.1371\/journal.pone.0219795","article-title":"Characterization and whole genome sequencing of closely related multidrug- resistant Salmonella enterica serovar Heidelberg isolates from imported poultry meat in the Netherlands","volume":"14","author":"van den Berg R.R.","year":"2019","unstructured":"van den Berg R.R., , Dissel S., , M.Rapallini L.B.A, , van der Weijden C.C, , Wit B., , and Id R.H.. 2019. Characterization and whole genome sequencing of closely related multidrug- resistant Salmonella enterica serovar Heidelberg isolates from imported poultry meat in the Netherlands. PLoS One, 14:e0219795.","journal-title":"PLoS One"},{"key":"e_1_3_4_47_2","article-title":"INNUENDO whole genome and core genome MLST schemas and datasets for Salmonella enterica","author":"Rossi M.","year":"2018","unstructured":"Rossi M., , Da Silva M.S, , Ribeiro-Gon\u00e7alves B.F, , Silva D.N, , Machado M.P, , Oleastro M., , Borges V., , Isidro J., , Viera L., , Halkilahti J., , Jaakkonen A., , Palma F., , Salmenlinna S., , Hakkinen M., , Garaizar J., , Bikandi J., , Hilbert F., , and Carri\u00e7o J.A.. 2018. INNUENDO whole genome and core genome MLST schemas and datasets for Salmonella enterica. Zenodo [Epub ahead of print]; DOI:10.5281\/ZENODO.1323684.","journal-title":"Zenodo"},{"key":"e_1_3_4_48_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1099\/mgen.0.000166","article-title":"chewBBACA: a complete suite for gene-by-gene schema creation and strain identification","volume":"4","author":"Silva M.","year":"2018","unstructured":"Silva M., , Machado M.P, , Silva D.N, , Rossi M., , Moran-Gilad J., , Santos S., , Ramirez M., , and Carri\u00e7o J.A.. 2018. chewBBACA: a complete suite for gene-by-gene schema creation and strain identification. Microb. Genomics, 4:1\u20137.","journal-title":"Microb. Genomics"},{"key":"e_1_3_4_49_2","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1186\/1471-2105-13-87","article-title":"PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods","volume":"13","author":"Francisco A.P.","year":"2012","unstructured":"Francisco A.P., , Vaz C., , Monteiro P.T, , Melo-Cristino J., , Ramirez M., , and Carri\u00e7o J.A.. 2012. PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinformatics, 13:87.","journal-title":"BMC Bioinformatics"},{"key":"e_1_3_4_50_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw359"},{"key":"e_1_3_4_51_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-152"},{"key":"e_1_3_4_52_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw582"},{"key":"e_1_3_4_53_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fct.2008.02.006"},{"key":"e_1_3_4_54_2","first-page":"1","volume":"43","author":"Fluit, A.C","year":"2005","unstructured":"Fluit, A.C. 2005. Towards more virulent and antibiotic-resistant Salmonella?, 43:1\u201311.","journal-title":"Towards more virulent and antibiotic-resistant Salmonella?"},{"key":"e_1_3_4_55_2","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1128\/JCM.02200-15","article-title":"Usefulness of high-quality core genome single-nucleotide variant analysis for subtyping the highly clonal and the most prevalent Salmonella enterica Serovar Heidelberg clone in the context of outbreak investigations","volume":"54","author":"Bekal S.","year":"2016","unstructured":"Bekal S., , Berry C., , Reimer A.R, , Van Domselaar G., , Beaudry G., , Fournier E., , Doualla-Bell F., , Levac E., , Gaulin C., , Ramsay D., , Huot C., , Walker M., , Sieffert C., , and Tremblay C.. 2016. Usefulness of high-quality core genome single-nucleotide variant analysis for subtyping the highly clonal and the most prevalent Salmonella enterica Serovar Heidelberg clone in the context of outbreak investigations. J. Clin. Microbiol. 54:289\u2013295.","journal-title":"J. Clin. Microbiol"},{"key":"e_1_3_4_56_2","doi-asserted-by":"crossref","first-page":"1046","DOI":"10.1093\/gbe\/evu079","article-title":"Comparative genomic analysis and virulence differences in closely related Salmonella enterica serotype Heidelberg isolates from humans, retailmeats, and animals","volume":"6","author":"Hoffmann M.","year":"2014","unstructured":"Hoffmann M., , Zhao S., , Pettengill J., , Luo Y., , Monday S.R, , Abbott J., , Ayers S.L, , Cinar H.N, , Muruvanda T., , Li C., , Allard M.W, , Whichard J., , Meng J., , Brown E.W, , and McDermott P.F.. 2014. Comparative genomic analysis and virulence differences in closely related Salmonella enterica serotype Heidelberg isolates from humans, retailmeats, and animals. Genome Biol. Evol. 6:1046\u20131068.","journal-title":"Genome Biol. Evol"},{"key":"e_1_3_4_57_2","first-page":"1","article-title":"Regulation (EC) No 852\/2004 of the European Parliament and of the council of 29 April 2004 on the hygiene of foodstuffs","volume":"139","author":"European Comission","year":"2004","unstructured":"European Comission. 2004. Regulation (EC) No 852\/2004 of the European Parliament and of the council of 29 April 2004 on the hygiene of foodstuffs. Off. J. Eur. Union. 139:1\u201354.","journal-title":"Off. J. Eur. Union"},{"key":"e_1_3_4_58_2","first-page":"1","article-title":"Commission Regulation (EC) No 2073\/2005 Of 15 November 2005 On Microbial Criteria For Foodstuffs","volume":"338","author":"European Commission","year":"2005","unstructured":"European Commission. 2005. Commission Regulation (EC) No 2073\/2005 Of 15 November 2005 On Microbial Criteria For Foodstuffs. Off. J. Eur. Union, L338:1\u201326.","journal-title":"Off. J. Eur. Union"},{"key":"e_1_3_4_59_2","first-page":"1","article-title":"Commission Regulation (EC) No 2073\/2005 of 15 November 2005 on Microbiological Criteria for Foodstuffs","volume":"338","author":"European Commission","year":"2019","unstructured":"European Commission. 2019. Commission Regulation (EC) No 2073\/2005 of 15 November 2005 on Microbiological Criteria for Foodstuffs. Eur. Union Off. J. 338:1\u201326.","journal-title":"Eur. Union Off. J"},{"key":"e_1_3_4_60_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2018.0044"},{"key":"e_1_3_4_61_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2017.05.040"},{"key":"e_1_3_4_62_2","first-page":"1","article-title":"Characterization of CMY-2-type Beta-lactamase-producing Escherichia coli isolated from chicken carcasses and human infection in a city of South Brazil","volume":"19","author":"Koga V.L.","year":"2019","unstructured":"Koga V.L., , Maluta R.P, , Da Silveira W.D, , Ribeiro R.A, , Hungria M., , Vespero E.C, , Nakazato G., , and Kobayashi R.K.T. 2019. Characterization of CMY-2-type Beta-lactamase-producing Escherichia coli isolated from chicken carcasses and human infection in a city of South Brazil. BMC Microbiol. 19:1\u20139.","journal-title":"BMC Microbiol"},{"key":"e_1_3_4_63_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fmicb.2019.02267","article-title":"Genetic features of mcr-1 mediated colistin resistance in CMY-2-producing Escherichia coli from romanian poultry","volume":"10","author":"Maciuca I.E.","year":"2019","unstructured":"Maciuca I.E., , Cummins M.L, , Cozma A.P, , Rimbu C.M, , Guguianu E., , Panzaru C., , Licker M., , Szekely E., , Flonta M., , Djordjevic S.P, , and Timofte D.. 2019. Genetic features of mcr-1 mediated colistin resistance in CMY-2-producing Escherichia coli from romanian poultry. Front. Microbiol. 10:1\u201315.","journal-title":"Front. Microbiol"},{"key":"e_1_3_4_64_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-018-4976-3","article-title":"Whole genome analyses Of CMY-2-producing Escherichia coli isolates from humans, animals and food in germany","volume":"19","author":"Pietsch M.","year":"2018","unstructured":"Pietsch M., , Irrgang A., , Roschanski N., , Brenner Michael G., , Hamprecht A., , Rieber H., , K\u00e4sbohrer A., , Schwarz S., , R\u00f6sler U., , Kreienbrock L., , Pfeifer Y., , Fuchs S., , Werner G., , B\u00fchling A., , Domurath B., , Wendt C., , Valenza G., , Wahl H.G, , Hellkamp J., , Arvand M., , Kresken M., , Podschun R., , Schneider S., , Tobisch S., , Witt M., , Eckmanns T., , Hachmann U., , B\u00fchrlen U., , von Salviati-Claudius C., , Lu H.M, , Laube H., , and Hering J.. 2018. Whole genome analyses Of CMY-2-producing Escherichia coli isolates from humans, animals and food in germany. BMC Genomics, 19:1\u201317.","journal-title":"BMC Genomics"},{"key":"e_1_3_4_65_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1128\/AAC.02528-18","article-title":"Fate of CMY-2-encoding plasmids introduced into the human fecal microbiota by exogenous Escherichia coli","volume":"63","author":"Anjum M.","year":"2019","unstructured":"Anjum M., , Madsen J.S, , Nesme J., , Jana B., , Wiese M., , Jasinskyte D., , Nielsen D.S, , S\u00f8rensen S.J, , Dalsgaard A., , Moodley A., , Bortolaia V., , and Guardabassi L.. 2019. Fate of CMY-2-encoding plasmids introduced into the human fecal microbiota by exogenous Escherichia coli. Antimicrob. Agents Chemother. 63:1\u201313.","journal-title":"Antimicrob. Agents Chemother"},{"key":"e_1_3_4_66_2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1590\/1516-635x17011-10","article-title":"Fluoroquinolones in industrial poultry production, bacterial resistance and food residues: a review","volume":"17","author":"Gouv\u00eaa R.","year":"2015","unstructured":"Gouv\u00eaa R., , dos Santos F.F, , de Aquino M.H.C, , and de Pereira A.V.L. 2015. Fluoroquinolones in industrial poultry production, bacterial resistance and food residues: a review. Rev. Bras. Ci\u00eanc. Av\u00edc. 17:1\u201310.","journal-title":"Rev. Bras. Ci\u00eanc. Av\u00edc"},{"key":"e_1_3_4_67_2","doi-asserted-by":"crossref","first-page":"e77866","DOI":"10.1371\/journal.pone.0077866","article-title":"Impact of plasmids, including those encoding VirB4\/D4 Type IV secretion systems, on Salmonella enterica serovar Heidelberg virulence in macrophages and epithelial cells","volume":"8","author":"Gokulan K.","year":"2013","unstructured":"Gokulan K., , Khare S., , Rooney A.W, , Han J., , Lynne A.M, , and Foley S.L.. 2013. Impact of plasmids, including those encoding VirB4\/D4 Type IV secretion systems, on Salmonella enterica serovar Heidelberg virulence in macrophages and epithelial cells. PLoS One, 8:e77866.","journal-title":"PLoS One"},{"key":"e_1_3_4_68_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micres.2014.06.007"},{"key":"e_1_3_4_69_2","doi-asserted-by":"crossref","first-page":"e00410","DOI":"10.1128\/AAC.00410-17","article-title":"First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar Heidelberg isolated from broiler chickens","volume":"61","author":"Rehman M.A.","year":"2017","unstructured":"Rehman M.A., , Yin X., , Persaud-Lachhman M.G, , and Diarra M.S.. 2017. First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar Heidelberg isolated from broiler chickens. Antimicrob. Agents Chemother. 61:e00410-17.","journal-title":"Antimicrob. Agents Chemother"},{"key":"e_1_3_4_70_2","first-page":"Switzerland","article-title":"Five Keys for Safer Food","author":"World Health Organization","year":"2006","unstructured":"World Health Organization. 2006. Five Keys for Safer Food. WHO,, Geneva, Switzerland.","journal-title":"WHO,"},{"key":"e_1_3_4_71_2","first-page":"e00009","article-title":"Whole genome sequencing identifies in vivo acquisition of a bla CTX-M-27 -encoding IncFII transmissible plasmid as the cause of ceftriaxone treatment failure for an invasive Salmonella enterica serovar Typhimurium infection","volume":"61","author":"McCollister B.","year":"2016","unstructured":"McCollister B., , Kotter C.V, , Frank D.N, , Washburn T., , and Jobling M.G.. 2016. Whole genome sequencing identifies in vivo acquisition of a bla CTX-M-27 -encoding IncFII transmissible plasmid as the cause of ceftriaxone treatment failure for an invasive Salmonella enterica serovar Typhimurium infection. Antimicrob. Agents Chemother. 61:e00009-17","journal-title":"Antimicrob. Agents Chemother"}],"container-title":["Microbial Drug Resistance"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.sagepub.com\/doi\/full-xml\/10.1089\/mdr.2019.0384","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/mdr.2019.0384","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/mdr.2019.0384","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T20:36:49Z","timestamp":1777667809000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.sagepub.com\/doi\/full\/10.1089\/mdr.2019.0384"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,1]]},"references-count":70,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,1]]}},"alternative-id":["10.1089\/mdr.2019.0384"],"URL":"https:\/\/doi.org\/10.1089\/mdr.2019.0384","relation":{},"ISSN":["1076-6294","1931-8448"],"issn-type":[{"value":"1076-6294","type":"print"},{"value":"1931-8448","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,1]]}}}