{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T23:10:09Z","timestamp":1787008209840,"version":"build-2736575974"},"reference-count":21,"publisher":"SAGE Publications","issue":"12","license":[{"start":{"date-parts":[[2020,12,1]],"date-time":"2020-12-01T00:00:00Z","timestamp":1606780800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.sagepub.com\/page\/policies\/text-and-data-mining-license"}],"content-domain":{"domain":["journals.sagepub.com"],"crossmark-restriction":true},"short-container-title":["Microbial Drug Resistance"],"published-print":{"date-parts":[[2020,12,1]]},"abstract":"<jats:p>\n                    Whole-genome sequencing analyses have provided important data and information on the repertoire of resistance genes in several bacterial species. This study examined to what extent the antimicrobial resistance genes found in a set of whole-genome-sequenced\n                    <jats:italic toggle=\"yes\">Salmonella<\/jats:italic>\n                    Enteritidis strains from Brazil correlated with the phenotypic antimicrobial resistance possibly related to these genes. The genotypic resistance data from the strains studied were compared with publicly available data from strains isolated in other countries. The genotypic resistance profiles were accessed on the NCBI Pathogen Detection website, and the phenotypic resistance profiles were determined by the disk diffusion technique according to the Clinical and Laboratory Standards Institute guidelines. Fourteen of the 256 sequenced strains presented antimicrobial resistance genes, with the highest prevalence of resistance genes to aminoglycosides\u2014with 16 genes detected in seven strains\u2014not only in Brazilian strains but also in the strains from other parts of the world. The strongest correlation between phenotypic and genotypic resistance was found for tetracycline (75%). The genotypic and phenotypic profiles of the\n                    <jats:italic toggle=\"yes\">S.<\/jats:italic>\n                    Enteritidis strains studied only partially matched, and they diverged in some antimicrobial classes more strongly than in other classes. The advances on whole-genome sequencing analyses associated with a better understanding of the correlation between phenotypic and genotypic resistance data may improve this powerful tool for antimicrobial resistance prediction.\n                  <\/jats:p>","DOI":"10.1089\/mdr.2019.0477","type":"journal-article","created":{"date-parts":[[2020,4,20]],"date-time":"2020-04-20T17:06:38Z","timestamp":1587402398000},"page":"1466-1471","update-policy":"https:\/\/doi.org\/10.1177\/sage-journals-update-policy","source":"Crossref","is-referenced-by-count":6,"title":["Partial Correlation Between Phenotypic and Genotypic Antimicrobial Resistance of\n                    <i>Salmonella enterica<\/i>\n                    Serovar Enteritidis Strains from Brazil"],"prefix":"10.1177","volume":"26","author":[{"given":"F\u00e1bio","family":"Campioni","sequence":"first","affiliation":[{"name":"Departamento de An\u00e1lises Cl\u00ednicas, Toxicol\u00f3gicas e Bromatol\u00f3gicas - Faculdade de Ci\u00eancias Farmac\u00eauticas de Ribeir\u00e3o Preto, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carolina N.","family":"Gomes","sequence":"additional","affiliation":[{"name":"Departamento de An\u00e1lises Cl\u00ednicas, Toxicol\u00f3gicas e Bromatol\u00f3gicas - Faculdade de Ci\u00eancias Farmac\u00eauticas de Ribeir\u00e3o Preto, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alzira M.M.","family":"Bergamini","sequence":"additional","affiliation":[{"name":"Instituto Adolfo Lutz de Ribeir\u00e3o Preto, Rua Minas 877, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D\u00e1lia P.","family":"Rodrigues","sequence":"additional","affiliation":[{"name":"Funda\u00e7\u00e3o Instituto Oswaldo Cruz - FIOCRUZ - Laborat\u00f3rio de Enterobact\u00e9rias - Avenida Brasil, Rio de Janeiro, Rio de Janeiro, Brazil."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juliana P.","family":"Falc\u00e3o","sequence":"additional","affiliation":[{"name":"Departamento de An\u00e1lises Cl\u00ednicas, Toxicol\u00f3gicas e Bromatol\u00f3gicas - Faculdade de Ci\u00eancias Farmac\u00eauticas de Ribeir\u00e3o Preto, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil."}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"179","published-online":{"date-parts":[[2020,12,3]]},"reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2010.0787"},{"key":"e_1_3_4_3_2","unstructured":"Brasil. 2019. Surtos de doen\u00e7as transmitidas por alimentos no Brasil. In. Minist\u00e9rio da Sa\u00fade do Brasil Brasil."},{"key":"e_1_3_4_4_2","unstructured":"CDC. 2017. DataFoodborne Diseases Active Surveillance Network (FoodNet): FoodNet 2015 Surveillance Report (Final Report). CDC Atlanta GA."},{"key":"e_1_3_4_5_2","first-page":"p","article-title":"The European Union summary report of antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2015","author":"European Food Safety Authority","year":"2017","unstructured":"European Food Safety Authority. 2017. The European Union summary report of antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2015. EFSA and, ECDC, p 212.","journal-title":"EFSA and"},{"key":"e_1_3_4_6_2","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.ARBA-0014-2017"},{"key":"e_1_3_4_7_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02536-15"},{"key":"e_1_3_4_8_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40246-015-0037-z"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.01030-16"},{"key":"e_1_3_4_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01610-18"},{"key":"e_1_3_4_11_2","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00399-17"},{"key":"e_1_3_4_12_2","first-page":"Clinical","article-title":"Performance Standards for Antimicrobial Susceptibility Testing","author":"CLSI","year":"2018","unstructured":"CLSI. 2018. Performance Standards for Antimicrobial Susceptibility Testing. In CLSI Supplement M100. (Wayne,, PA, Clinical and Laboratory Standards Institute.","journal-title":"In CLSI Supplement M100. 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Food Sci Nutr. 2:436\u2013442.","journal-title":"isolated from human,"},{"key":"e_1_3_4_20_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2016.11.012"},{"key":"e_1_3_4_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01405-18"},{"key":"e_1_3_4_22_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkz161"}],"container-title":["Microbial Drug Resistance"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.sagepub.com\/doi\/full-xml\/10.1089\/mdr.2019.0477","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/mdr.2019.0477","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/mdr.2019.0477","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T20:37:14Z","timestamp":1777667834000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.sagepub.com\/doi\/10.1089\/mdr.2019.0477"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,12,1]]},"references-count":21,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2020,12,1]]}},"alternative-id":["10.1089\/mdr.2019.0477"],"URL":"https:\/\/doi.org\/10.1089\/mdr.2019.0477","relation":{},"ISSN":["1076-6294","1931-8448"],"issn-type":[{"value":"1076-6294","type":"print"},{"value":"1931-8448","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,12,1]]}}}