{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T00:09:58Z","timestamp":1792109398027,"version":"4.4.0"},"reference-count":0,"publisher":"SAGE Publications","issue":"2","license":[{"start":{"date-parts":[[2006,6,1]],"date-time":"2006-06-01T00:00:00Z","timestamp":1149120000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.sagepub.com\/page\/policies\/text-and-data-mining-license"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["OMICS: A Journal of Integrative Biology"],"published-print":{"date-parts":[[2006,6]]},"abstract":"<jats:p>\n                    <jats:bold>In the eight years since phylogenomics was introduced as the intersection of genomics and\nphylogenetics, the field has provided fundamental insights into gene function, genome history\nand organismal relationships. The utility of phylogenomics is growing with the increase\nin the number and diversity of taxa for which whole genome and large transcriptome sequence\nsets are being generated. We assert that the synergy between genomic and phylogenetic\nperspectives in comparative biology would be enhanced by the development and refinement\nof minimal reporting standards for phylogenetic analyses. Encouraged by the\ndevelopment of the Minimum Information About a Microarray Experiment (MIAME) standard,\nwe propose a similar roadmap for the development of a Minimal Information About\na Phylogenetic Analysis (MIAPA) standard. Key in the successful development and implementation\nof such a standard will be broad participation by developers of phylogenetic analysis\nsoftware, phylogenetic database developers, practitioners of phylogenomics, and journal\neditors.<\/jats:bold>\n                  <\/jats:p>\n                  <jats:p>\n                    <jats:bold>This paper is part of the special issue of OMICS on data standards.<\/jats:bold>\n                  <\/jats:p>","DOI":"10.1089\/omi.2006.10.231","type":"journal-article","created":{"date-parts":[[2006,8,10]],"date-time":"2006-08-10T19:44:17Z","timestamp":1155239057000},"page":"231-237","source":"Crossref","is-referenced-by-count":50,"title":["Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)"],"prefix":"10.1177","volume":"10","author":[{"given":"Jim","family":"Leebens-Mack","sequence":"first","affiliation":[{"name":"Department of Biology, Institute of Molecular Evolutionary Genetics, and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, Pennsylvania."},{"name":"New address: Department of Plant Biology, University of Georgia, Athens, Georgia 30602."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Todd","family":"Vision","sequence":"additional","affiliation":[{"name":"Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Brenner","sequence":"additional","affiliation":[{"name":"New York Botanical Garden, Bronx, New York."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John E.","family":"Bowers","sequence":"additional","affiliation":[{"name":"Applied Genetic Technology Center, Departments of Crop and Soil Science, Botany, and Genetics, University of Georgia, Athens, Georgia."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Steven","family":"Cannon","sequence":"additional","affiliation":[{"name":"USDA-ARS, and Department of Agronomy, Iowa State University, Ames, Iowa."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark J.","family":"Clement","sequence":"additional","affiliation":[{"name":"Networked Computing Laboratory, Computer Science Department, Brigham Young University, Provo, Utah."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Clifford W.","family":"Cunningham","sequence":"additional","affiliation":[{"name":"Department of Biology, Duke University, Durham, North Carolina."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claude","family":"DePamphilis","sequence":"additional","affiliation":[{"name":"Department of Biology, Institute of Molecular Evolutionary Genetics, and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, Pennsylvania."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rob","family":"DeSalle","sequence":"additional","affiliation":[{"name":"Division of Invertebrate Zoology, American Museum of Natural History, New York, New York."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeff J.","family":"Doyle","sequence":"additional","affiliation":[{"name":"L.H. Bailey Hortorium, Cornell University, Ithaca, New York."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jonathan A.","family":"Eisen","sequence":"additional","affiliation":[{"name":"UC Davis Genome Center, Section of Evolution and Ecology, and the Department of Medical Microbiology and Immunology, University of California, Davis, California."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xun","family":"Gu","sequence":"additional","affiliation":[{"name":"Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John","family":"Harshman","sequence":"additional","affiliation":[{"name":"Pepperwood Way, San Jose, California."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert K.","family":"Jansen","sequence":"additional","affiliation":[{"name":"Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Austin, Texas."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elizabeth A.","family":"Kellogg","sequence":"additional","affiliation":[{"name":"Department of Biology, University of Missouri, Saint Louis, Missouri."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eugene V.","family":"Koonin","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brent D.","family":"Mishler","sequence":"additional","affiliation":[{"name":"University Herbarium, Jepson Herbarium, and Department of Integrative Biology, University of California, Berkeley, California."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Herv\u00e9","family":"Philippe","sequence":"additional","affiliation":[{"name":"Canadian Institute for Advanced Research, Centre Robert Cedergren, Departement de Biochimie, Universite de Montreal, Succursale Centre-Ville, Montreal, Canada."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J. Chris","family":"Pires","sequence":"additional","affiliation":[{"name":"Division of Biological Sciences, University of Missouri\u2014Columbia, Columbia, Missouri."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yin-Long","family":"Qiu","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Seung Y.","family":"Rhee","sequence":"additional","affiliation":[{"name":"Department of Plant Biology, Carnegie Institution, Stanford, California."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kimmen","family":"Sj\u00f6lander","sequence":"additional","affiliation":[{"name":"Department of Bioengineering, University of California, Berkeley, California."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Douglas E.","family":"Soltis","sequence":"additional","affiliation":[{"name":"Department of Botany and the Genetics Institute, University of Florida, Gainesville, Florida."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pamela S.","family":"Soltis","sequence":"additional","affiliation":[{"name":"Florida Museum of Natural History and the Genetics Institute, University of Florida, Gainesville, Florida."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dennis W.","family":"Stevenson","sequence":"additional","affiliation":[{"name":"New York Botanical Garden, Bronx, New York."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kerr","family":"Wall","sequence":"additional","affiliation":[{"name":"Department of Biology, Institute of Molecular Evolutionary Genetics, and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, Pennsylvania."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tandy","family":"Warnow","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Texas at Austin, Austin, Texas."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christian","family":"Zmasek","sequence":"additional","affiliation":[{"name":"Burnham Institute for Medical Research, La Jolla, California."}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"179","published-online":{"date-parts":[[2006,7]]},"container-title":["OMICS: A Journal of Integrative Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/omi.2006.10.231","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/omi.2006.10.231","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T22:53:38Z","timestamp":1777676018000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.sagepub.com\/doi\/full\/10.1089\/omi.2006.10.231"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,6]]},"references-count":0,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2006,6]]}},"alternative-id":["10.1089\/omi.2006.10.231"],"URL":"https:\/\/doi.org\/10.1089\/omi.2006.10.231","relation":{},"ISSN":["1536-2310","1557-8100"],"issn-type":[{"value":"1536-2310","type":"print"},{"value":"1557-8100","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,6]]}}}