{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,4]],"date-time":"2026-05-04T20:51:47Z","timestamp":1777927907223,"version":"3.51.4"},"reference-count":14,"publisher":"SAGE Publications","issue":"1","license":[{"start":{"date-parts":[[2010,2,1]],"date-time":"2010-02-01T00:00:00Z","timestamp":1264982400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.sagepub.com\/page\/policies\/text-and-data-mining-license"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["OMICS: A Journal of Integrative Biology"],"published-print":{"date-parts":[[2010,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Using comparative genomics, we identified a new variant of the\n                    <jats:italic toggle=\"yes\">Vibrio<\/jats:italic>\n                    Seventh Pandemic Island-I (VSP-I). Results of polymerase chain reaction (PCR) screening for both known VSP-I variants indicate that the novel variant is present only in non-O1\/non-O139 strains of\n                    <jats:italic toggle=\"yes\">V. cholerae<\/jats:italic>\n                    and\n                    <jats:italic toggle=\"yes\">Vibrio mimicus<\/jats:italic>\n                    . Comparative genomics revealed little sequence divergence in the seventh pandemic VSP-I; however, a second insertion site located on the smaller chromosome was identified. Although the seventh pandemic VSP-I genomic island was detected in all seventh pandemic\n                    <jats:italic toggle=\"yes\">V. cholerae<\/jats:italic>\n                    serogroup O1 and O139 isolates examined in this study, unique genes of the island cannot be used alone as an identifying target, because the seventh pandemic VSP-I was also present in three non-seventh pandemic strains of\n                    <jats:italic toggle=\"yes\">V. cholerae<\/jats:italic>\n                    isolated from Chesapeake Bay. As an alternative, a PCR assay targeting the VC2346 gene was found to be confirmatory for seventh pandemic isolates of\n                    <jats:italic toggle=\"yes\">V. cholerae<\/jats:italic>\n                    .\n                  <\/jats:p>","DOI":"10.1089\/omi.2009.0087","type":"journal-article","created":{"date-parts":[[2010,2,8]],"date-time":"2010-02-08T08:26:49Z","timestamp":1265617609000},"page":"1-7","source":"Crossref","is-referenced-by-count":30,"title":["Occurrence of the\n                    <i>Vibrio cholerae<\/i>\n                    Seventh Pandemic VSP-I Island and a New Variant"],"prefix":"10.1177","volume":"14","author":[{"given":"Christopher J.","family":"Grim","sequence":"first","affiliation":[{"name":"University of Maryland Institute for Advanced Computer Studies"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jinna","family":"Choi","sequence":"additional","affiliation":[{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jongsik","family":"Chun","sequence":"additional","affiliation":[{"name":"Seoul National University","place":["Republic of Korea"]},{"name":"International Vaccine Institute","place":["Republic of Korea"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yoon-Seong","family":"Jeon","sequence":"additional","affiliation":[{"name":"Seoul National University","place":["Republic of Korea"]}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elisa","family":"Taviani","sequence":"additional","affiliation":[{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nur A.","family":"Hasan","sequence":"additional","affiliation":[{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bradd","family":"Haley","sequence":"additional","affiliation":[{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anwar","family":"Huq","sequence":"additional","affiliation":[{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rita R.","family":"Colwell","sequence":"additional","affiliation":[{"name":"University of Maryland Institute for Advanced Computer Studies"},{"name":"University of Maryland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"179","published-online":{"date-parts":[[2010,2]]},"reference":[{"key":"e_1_3_1_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbadis.2003.08.004"},{"key":"e_1_3_1_3_1","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02026-08"},{"key":"e_1_3_1_4_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0907787106"},{"key":"e_1_3_1_5_1","doi-asserted-by":"publisher","DOI":"10.1128\/aem.41.2.555-558.1981"},{"key":"e_1_3_1_6_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.042667999"},{"issue":"1","key":"e_1_3_1_7_1","article-title":"Fast PCR software for PCR primer and probe design and repeat search","volume":"3","author":"Kalendar R.","year":"2009","unstructured":"Kalendar R., , Lee D., , Schulman A.H. 2009. Fast PCR software for PCR primer and probe design and repeat search. Genes, Genomes and Genomics, 3,1.","journal-title":"Genes, Genomes and Genomics"},{"key":"e_1_3_1_8_1","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.8.1.48"},{"key":"e_1_3_1_9_1","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2004-5-2-r12"},{"key":"e_1_3_1_10_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm404"},{"key":"e_1_3_1_11_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00562-07"},{"key":"e_1_3_1_12_1","first-page":"11","article-title":"Optimal alignments in linear space","volume":"4","author":"Myers E.W.","year":"1988","unstructured":"Myers E.W., , Miller W. 1988. Optimal alignments in linear space. Comput Appl Biosci, 4:11\u201317.","journal-title":"Comput Appl Biosci"},{"key":"e_1_3_1_13_1","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.42.10.4657-4671.2004"},{"key":"e_1_3_1_14_1","doi-asserted-by":"publisher","DOI":"10.1099\/00222615-39-4-310"},{"key":"e_1_3_1_15_1","doi-asserted-by":"publisher","DOI":"10.1099\/00221287-13-1-111"}],"container-title":["OMICS: A Journal of Integrative Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.sagepub.com\/doi\/full-xml\/10.1089\/omi.2009.0087","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/omi.2009.0087","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.sagepub.com\/doi\/pdf\/10.1089\/omi.2009.0087","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T22:55:10Z","timestamp":1777676110000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.sagepub.com\/doi\/full\/10.1089\/omi.2009.0087"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,2]]},"references-count":14,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2010,2]]}},"alternative-id":["10.1089\/omi.2009.0087"],"URL":"https:\/\/doi.org\/10.1089\/omi.2009.0087","relation":{},"ISSN":["1536-2310","1557-8100"],"issn-type":[{"value":"1536-2310","type":"print"},{"value":"1557-8100","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,2]]}}}