{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T08:52:54Z","timestamp":1775983974660,"version":"3.50.1"},"reference-count":37,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2022,3,4]],"date-time":"2022-03-04T00:00:00Z","timestamp":1646352000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"Shenzhen Innovation of Science and Technology Commission","award":["JCY20200109140814408"],"award-info":[{"award-number":["JCY20200109140814408"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["22074060"],"award-info":[{"award-number":["22074060"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["22103036"],"award-info":[{"award-number":["22103036"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2021M691413"],"award-info":[{"award-number":["2021M691413"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,5,13]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The Cellular Thermal Shift Assay (CETSA) plays an important role in drug-target identification, and statistical analysis is a crucial step significantly affecting conclusion. We put forward ProSAP (Protein Stability Analysis Pod), an open-source, cross-platform and user-friendly software tool, which provides multiple methods for thermal proteome profiling (TPP) analysis, nonparametric analysis (NPA), proteome integral solubility alteration and isothermal shift assay (iTSA). For testing the performance of ProSAP, we processed several datasets and compare the performance of different algorithms. Overall, TPP analysis is more accurate with fewer false positive targets, but NPA methods are flexible and free from parameters. For iTSA, edgeR and DESeq2 identify more true targets than t-test and Limma, but when it comes to ranking, the four methods show not much difference. ProSAP software is available at https:\/\/github.com\/hcji\/ProSAP and https:\/\/zenodo.org\/record\/5763315.<\/jats:p>","DOI":"10.1093\/bib\/bbac057","type":"journal-article","created":{"date-parts":[[2022,3,2]],"date-time":"2022-03-02T12:07:56Z","timestamp":1646222876000},"source":"Crossref","is-referenced-by-count":18,"title":["ProSAP: a GUI software tool for statistical analysis and assessment of thermal stability data"],"prefix":"10.1093","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7364-0741","authenticated-orcid":false,"given":"Hongchao","family":"Ji","sequence":"first","affiliation":[{"name":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"}]},{"given":"Xue","family":"Lu","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"}]},{"given":"Zhenxiang","family":"Zheng","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"}]},{"given":"Siyuan","family":"Sun","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8172-5235","authenticated-orcid":false,"given":"Chris Soon Heng","family":"Tan","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"}]}],"member":"286","published-online":{"date-parts":[[2022,3,4]]},"reference":[{"key":"2022051813161512200_ref1","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1126\/science.1233606","article-title":"Monitoring drug target engagement in cells and tissues using the cellular thermal shift assay","volume":"341","author":"Molina","year":"2013","journal-title":"Science 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