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As an RNA virus, COVID-19 is more susceptible to variation than other viruses. Many problems involved in this epidemic have made biosafety and biosecurity (hereafter collectively referred to as \u2018biosafety\u2019) a popular and timely topic globally. Biosafety research covers a broad and diverse range of topics, and it is important to quickly identify hotspots and trends in biosafety research through big data analysis. However, the data-driven literature on biosafety research discovery is quite scant. We developed a novel topic model based on latent Dirichlet allocation, affinity propagation clustering and the PageRank algorithm (LDAPR) to extract knowledge from biosafety research publications from 2011 to 2020. Then, we conducted hotspot and trend analysis with LDAPR and carried out further studies, including annual hot topic extraction, a 10-year keyword evolution trend analysis, topic map construction, hot region discovery and fine-grained correlation analysis of interdisciplinary research topic trends. These analyses revealed valuable information that can guide epidemic prevention work: (1) the research enthusiasm over a certain infectious disease not only is related to its epidemic characteristics but also is affected by the progress of research on other diseases, and (2) infectious diseases are not only strongly related to their corresponding microorganisms but also potentially related to other specific microorganisms. The detailed experimental results and our code are available at https:\/\/github.com\/KEAML-JLU\/Biosafety-analysis.<\/jats:p>","DOI":"10.1093\/bib\/bbac194","type":"journal-article","created":{"date-parts":[[2022,4,27]],"date-time":"2022-04-27T19:30:46Z","timestamp":1651087846000},"source":"Crossref","is-referenced-by-count":5,"title":["Discovering trends and hotspots of biosafety and biosecurity research via machine learning"],"prefix":"10.1093","volume":"23","author":[{"given":"Renchu","family":"Guan","sequence":"first","affiliation":[{"name":"Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Jilin University , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Zhuhai Sub Laboratory , Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education, , Zhuhai, 519041, Guangdong, China"},{"name":"Zhuhai College of Science and Technology , Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education, , Zhuhai, 519041, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haoyu","family":"Pang","sequence":"additional","affiliation":[{"name":"Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Jilin University , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yanchun","family":"Liang","sequence":"additional","affiliation":[{"name":"Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Jilin University , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Zhuhai Sub Laboratory , Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education, , Zhuhai, 519041, Guangdong, China"},{"name":"Zhuhai College of Science and Technology , Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education, , Zhuhai, 519041, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhongjun","family":"Shao","sequence":"additional","affiliation":[{"name":"Department of Epidemiology , Ministry of Education Key Laboratory of Hazard Assessment and Control in Special Operational Environment, School of Public Health, , Xi\u2019an, 710032, Shaanxi, China"},{"name":"Air Force Medical University , Ministry of Education Key Laboratory of Hazard Assessment and Control in Special Operational Environment, School of Public Health, , Xi\u2019an, 710032, Shaanxi, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xin","family":"Gao","sequence":"additional","affiliation":[{"name":"Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"},{"name":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"},{"name":"BioMap , Beijing, 100192, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dong","family":"Xu","sequence":"additional","affiliation":[{"name":"Department of Electric Engineering and Computer Science, and Christopher S. Bond Life Sciences Center , , Columbia, 65201, Missouri, USA"},{"name":"University of Missouri , , Columbia, 65201, Missouri, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaoyue","family":"Feng","sequence":"additional","affiliation":[{"name":"Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"},{"name":"Jilin University , College of Computer Science and Technology, , Changchun, 130012, Jilin, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2022,5,22]]},"reference":[{"issue":"10218","key":"2022092013214250500_ref1","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1016\/S0140-6736(19)32999-X","article-title":"Over-the-counter medicines in Pakistan: misuse and overuse","volume":"395","author":"Ali","year":"2020","journal-title":"The Lancet"},{"issue":"1","key":"2022092013214250500_ref2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/srep05824","article-title":"Evaluation of transmission risks associated with in vivo replication of several high containment pathogens in a biosafety level 4 laboratory","volume":"4","author":"Alimonti","year":"2014","journal-title":"Sci Rep"},{"issue":"5","key":"2022092013214250500_ref3","doi-asserted-by":"crossref","first-page":"452","DOI":"10.1016\/j.mib.2003.09.001","article-title":"Persistence of antibiotic resistant bacteria","volume":"6","author":"Andersson","year":"2003","journal-title":"Curr Opin Microbiol"},{"issue":"9893","key":"2022092013214250500_ref4","doi-asserted-by":"crossref","first-page":"662","DOI":"10.1016\/S0140-6736(13)61504-4","article-title":"Assessing the pandemic potential of mers-cov","volume":"382","author":"Bauch","year":"2013","journal-title":"The Lancet"},{"issue":"1","key":"2022092013214250500_ref5","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1214\/07-AOAS114","article-title":"A correlated topic model of science","volume":"1","author":"Blei","year":"2007","journal-title":"The Annals of Applied Statistics"},{"key":"2022092013214250500_ref6","first-page":"993","article-title":"Latent dirichlet allocation. 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