{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:33:43Z","timestamp":1772138023244,"version":"3.50.1"},"reference-count":49,"publisher":"Oxford University Press (OUP)","issue":"3","funder":[{"name":"Adaptive Oncology Programme at the Ontario Institute for Cancer Research"},{"DOI":"10.13039\/100007917","name":"USDA Agricultural Research Service","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007917","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Tropical Pest Genetics and Molecular Biology Research Unit","award":["2040-22430-028-000D"],"award-info":[{"award-number":["2040-22430-028-000D"]}]},{"name":"Arthropod borne Animal Diseases Research Unit","award":["3020-32000-018-000-D"],"award-info":[{"award-number":["3020-32000-018-000-D"]}]},{"name":"Arthropod borne Animal Diseases Research Unit","award":["3020-32000-020-000-D"],"award-info":[{"award-number":["3020-32000-020-000-D"]}]},{"name":"Arthropod borne Animal Diseases Research Unit","award":["3020- 32000-019-000-D"],"award-info":[{"award-number":["3020- 32000-019-000-D"]}]},{"DOI":"10.13039\/100007917","name":"USDA Agricultural Research Service","doi-asserted-by":"publisher","award":["0500-00093-001-00-D"],"award-info":[{"award-number":["0500-00093-001-00-D"]}],"id":[{"id":"10.13039\/100007917","id-type":"DOI","asserted-by":"publisher"}]},{"name":"WormBase","award":["U24HG002223"],"award-info":[{"award-number":["U24HG002223"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,3,27]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR bioHeaders Reference genome (FHR), a metadata standard guided by the principles of Findability, Accessibility, Interoperability and Reuse (FAIR) in addition to the principles of Transparency, Responsibility, User focus, Sustainability and Technology. The objective of FHR is to provide an extensive set of data serialisation methods and minimum data field requirements while still maintaining extensibility, flexibility and expressivity in an increasingly decentralised genomic data ecosystem. The effort needed to implement FHR is low; FHR\u2019s design philosophy ensures easy implementation while retaining the benefits gained from recording both machine and human-readable provenance.<\/jats:p>","DOI":"10.1093\/bib\/bbae122","type":"journal-article","created":{"date-parts":[[2024,3,30]],"date-time":"2024-03-30T22:52:46Z","timestamp":1711839166000},"source":"Crossref","is-referenced-by-count":2,"title":["FAIR Header Reference genome: a TRUSTworthy standard"],"prefix":"10.1093","volume":"25","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5719-4024","authenticated-orcid":false,"given":"Adam","family":"Wright","sequence":"first","affiliation":[{"name":"Adaptive Oncology Program , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"},{"name":"661 University Avenue Suite 500 , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6960-357X","authenticated-orcid":false,"given":"Mark D","family":"Wilkinson","sequence":"additional","affiliation":[{"name":"Departamento de Biotecnolog\u2019\u0131a-Biolog\u2019\u0131a Vegetal , Escuela T\u2019ecnica Superior de Ingenier\u2019\u0131a Agron\u2019omica, Alimentaria y de Biosistemas,Centro de Biotecnolog\u2019\u0131a y Gen\u2019omica de Plantas (CBGP, UPM-INIA\/CSIC), , Madrid, ES , Spain"},{"name":"Universidad Polit\u2019ecnica de Madrid (UPM) - Instituto Nacional de Investigaci\u2019on y Tecnolog\u2019\u0131a Agraria y Alimentaria (INIA\/CSIC), Pozuelo de Alarc\u2019on , Escuela T\u2019ecnica Superior de Ingenier\u2019\u0131a Agron\u2019omica, Alimentaria y de Biosistemas,Centro de Biotecnolog\u2019\u0131a y Gen\u2019omica de Plantas (CBGP, UPM-INIA\/CSIC), , Madrid, ES , Spain"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6601-2165","authenticated-orcid":false,"given":"Christopher","family":"Mungall","sequence":"additional","affiliation":[{"name":"Biosystems Data Science, Lawrence Berkeley National Laboratory , Building: 977, 1 Cyclotron Rd, Berkeley, CA 94720 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0459-9607","authenticated-orcid":false,"given":"Scott","family":"Cain","sequence":"additional","affiliation":[{"name":"Adaptive Oncology Program , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"},{"name":"661 University Avenue Suite 500 , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8959-5466","authenticated-orcid":false,"given":"Stephen","family":"Richards","sequence":"additional","affiliation":[{"name":"Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza , MS: BCM226, Houston, TX 77030 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7699-0173","authenticated-orcid":false,"given":"Paul","family":"Sternberg","sequence":"additional","affiliation":[{"name":"Division of Biology and Biological Engineering 140-18, California Institute of Technology , Pasadena, CA 91125 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7665-2385","authenticated-orcid":false,"given":"Ellen","family":"Provin","sequence":"additional","affiliation":[{"name":"Department of Horticultural Studies, Texas A&M University, HFSB 204, TAMU 2133, College Station , TX 77848 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5608-4256","authenticated-orcid":false,"given":"Jonathan L","family":"Jacobs","sequence":"additional","affiliation":[{"name":"American Type Culture Collection, 10801 University Blvd , Manassas, VA 20110 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9511-5139","authenticated-orcid":false,"given":"Scott","family":"Geib","sequence":"additional","affiliation":[{"name":"Tropical Pest Genetics and Molecular Biology Research Unit , Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, , 64 Nowelo St, Hilo HI 96720 , USA"},{"name":"Agricultural Research Service , Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, , 64 Nowelo St, Hilo HI 96720 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4945-5837","authenticated-orcid":false,"given":"Daniela","family":"Raciti","sequence":"additional","affiliation":[{"name":"Division of Biology and Biological Engineering 140-18, California Institute of Technology , Pasadena, CA 91125 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4457-6787","authenticated-orcid":false,"given":"Karen","family":"Yook","sequence":"additional","affiliation":[{"name":"Division of Biology and Biological Engineering 140-18, California Institute of Technology , Pasadena, CA 91125 , USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1983-4588","authenticated-orcid":false,"given":"Lincoln","family":"Stein","sequence":"additional","affiliation":[{"name":"Adaptive Oncology Program , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"},{"name":"661 University Avenue Suite 500 , Ontario Institute for Cancer Research, , Toronto, ON M5G 0A3 , Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3192-6538","authenticated-orcid":false,"given":"David C","family":"Molik","sequence":"additional","affiliation":[{"name":"Arthropod-borne Animal Diseases Research Unit , Center for Grain and Animal Health Research United States Department of Agriculture, , 1515 College Ave, Manhattan, KS 66502 USA"},{"name":"Agricultural Research Service , Center for Grain and Animal Health Research United States Department of Agriculture, , 1515 College Ave, Manhattan, KS 66502 USA"}]}],"member":"286","published-online":{"date-parts":[[2024,3,28]]},"reference":[{"issue":"4","key":"2024033102523340300_ref1","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1093\/jisesa\/ieac038","article-title":"An outsider\u2019s perspective on why we climb mountains and why projects like the i5k matter","volume":"22","author":"Molik","year":"2022","journal-title":"J Insect Sci"},{"issue":"2","key":"2024033102523340300_ref2","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1002\/cfg.278","article-title":"Towards interoperability in genome databases: the MAtDB (MIPS Arabidopsis thaliana database) experience","volume":"4","author":"Schoof","year":"2003","journal-title":"Comp Funct Genom"},{"key":"2024033102523340300_ref3","doi-asserted-by":"crossref","DOI":"10.1093\/bioinformatics\/btac327","article-title":"Assessing and assuring interoperability of a genomics file format","author":"Niu","year":"2022","journal-title":"Bioinformatics"},{"issue":"4693","key":"2024033102523340300_ref4","doi-asserted-by":"crossref","first-page":"1435","DOI":"10.1126\/science.2983426","article-title":"Rapid and sensitive protein similarity searches","volume":"227","author":"Lipman","year":"1985","journal-title":"Science"},{"issue":"4568","key":"2024033102523340300_ref5","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1126\/science.7123223","article-title":"DNA database","volume":"218","author":"Jordan","year":"1982","journal-title":"Science"},{"issue":"1","key":"2024033102523340300_ref6","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1038\/nrg2483","article-title":"Genotype phenotype databases: challenges and solutions for the post-genomic era","volume":"10","author":"Thorisson","year":"2009","journal-title":"Nat Rev Genet"},{"issue":"12","key":"2024033102523340300_ref7","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1038\/nrg3932","article-title":"Human genotype\u2013phenotype databases: aims, challenges and opportunities","volume":"16","author":"Brookes","year":"2015","journal-title":"Nat Rev Genet"},{"issue":"10","key":"2024033102523340300_ref8","doi-asserted-by":"crossref","first-page":"1417","DOI":"10.1101\/gr.191684.115","article-title":"Biological data sciences in genome research","volume":"25","author":"Schatz","year":"2015","journal-title":"Genome Res"},{"key":"2024033102523340300_ref9","volume-title":"2014 IEEE 30th International Conference on Data Engineering Workshops","author":"Sousa","year":"2014"},{"issue":"8","key":"2024033102523340300_ref10","doi-asserted-by":"crossref","first-page":"1537","DOI":"10.1093\/cid\/ciab615","article-title":"Interpretative labor and the bane of nonstandardized metadata in public health surveillance and food safety","volume":"73","author":"Pettengill","year":"2021","journal-title":"Clin Infect Dis"},{"issue":"6","key":"2024033102523340300_ref11","doi-asserted-by":"crossref","first-page":"881","DOI":"10.1007\/s00778-017-0486-1","article-title":"A survey on provenance: what for? 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