{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,10]],"date-time":"2026-02-10T18:43:15Z","timestamp":1770748995202,"version":"3.50.0"},"reference-count":54,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2010,1,1]]},"DOI":"10.1093\/bib\/bbp058","type":"journal-article","created":{"date-parts":[[2010,1,7]],"date-time":"2010-01-07T02:09:17Z","timestamp":1262830157000},"page":"3-14","source":"Crossref","is-referenced-by-count":55,"title":["Genome variation discovery with high-throughput sequencing data"],"prefix":"10.1093","volume":"11","author":[{"given":"A. V.","family":"Dalca","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.","family":"Brudno","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2010,1,6]]},"reference":[{"issue":"1","key":"1_30238675","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1038\/nmeth1155","volume":"5","author":"Rusk","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"10","key":"2_32164788","doi-asserted-by":"publisher","first-page":"1135","DOI":"10.1038\/nbt1486","volume":"26","author":"Shendure","year":"2008","journal-title":"Nature biotechnology","ISSN":"https:\/\/id.crossref.org\/issn\/1087-0156","issn-type":"print"},{"key":"3_36293427","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/j.nbt.2008.12.009","volume":"25","year":"2009","journal-title":"NEW BIOTECHNOL"},{"issue":"5","key":"4_30650833","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1101\/gr.074492.107","volume":"18","year":"2008","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"5","key":"5_30630013","doi-asserted-by":"publisher","first-page":"810","DOI":"10.1101\/gr.7337908","volume":"18","year":"2008","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"2","key":"6_32756438","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1101\/gr.079053.108","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"6","key":"7_34166455","doi-asserted-by":"publisher","first-page":"1117","DOI":"10.1101\/gr.089532.108","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7218","key":"8_32561536","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1038\/nature07517","volume":"456","author":"Bentley","year":"2008","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"7218","key":"9_32561537","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1038\/nature07484","volume":"456","author":"Wang","year":"2008","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"7","key":"10_31403653","doi-asserted-by":"publisher","first-page":"613","DOI":"10.1038\/nmeth.1223","volume":"5","author":"Cloonan","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"7","key":"11_31403652","doi-asserted-by":"publisher","first-page":"621","DOI":"10.1038\/nmeth.1226","volume":"5","author":"Mortazavi","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"5830","key":"12_28787857","doi-asserted-by":"publisher","first-page":"1497","DOI":"10.1126\/science.1141319","volume":"316","year":"2007","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"10","key":"13_29387679","doi-asserted-by":"publisher","first-page":"e254","DOI":"10.1371\/journal.pbio.0050254","volume":"5","author":"Levy","year":"2007","journal-title":"PLoS biology","ISSN":"https:\/\/id.crossref.org\/issn\/1544-9173","issn-type":"print"},{"issue":"5872","key":"14_30742143","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1126\/science.1150427","volume":"320","author":"Harris","year":"2008","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"key":"15_31391374","doi-asserted-by":"publisher","first-page":"387","DOI":"10.1146\/annurev.genom.9.081307.164359","volume":"9","author":"Mardis","year":"2008","journal-title":"Annual review of genomics and human genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1527-8204","issn-type":"print"},{"issue":"2","key":"16_5495062","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1080\/07391102.1989.10507773","volume":"7","author":"Jett","year":"1989","journal-title":"Journal of biomolecular structure &amp; dynamics","ISSN":"https:\/\/id.crossref.org\/issn\/0739-1102","issn-type":"print"},{"issue":"5910","key":"17_32669992","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1126\/science.1162986","volume":"323","year":"2009","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"9","key":"18_35448503","doi-asserted-by":"publisher","first-page":"847","DOI":"10.1038\/nbt.1561","volume":"27","author":"Pushkarev","year":"2009","journal-title":"Nature biotechnology","ISSN":"https:\/\/id.crossref.org\/issn\/1087-0156","issn-type":"print"},{"issue":"11 Suppl","key":"19_35903106","doi-asserted-by":"publisher","first-page":"S13","DOI":"10.1038\/nmeth.1374","volume":"6","author":"Medvedev","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"21","key":"20_31655326","doi-asserted-by":"publisher","first-page":"2431","DOI":"10.1093\/bioinformatics\/btn416","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"11","key":"21_31738833","doi-asserted-by":"publisher","first-page":"1851","DOI":"10.1101\/gr.078212.108","volume":"18","year":"2008","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"5","key":"22_30340371","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1093\/bioinformatics\/btn025","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"7","key":"23_34039903","doi-asserted-by":"publisher","first-page":"967","DOI":"10.1093\/bioinformatics\/btp087","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"24_34218706","doi-asserted-by":"publisher","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"14","key":"25_34872029","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"16","key":"26_35017673","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"27_32423321","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1093\/bioinformatics\/btn565","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"6","key":"28_34756303","doi-asserted-by":"publisher","first-page":"1124","DOI":"10.1101\/gr.088013.108","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"30_36293428","first-page":"5","volume":"5","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"10","key":"31_35516162","doi-asserted-by":"publisher","first-page":"1061","DOI":"10.1038\/ng.437","volume":"41","author":"Alkan","year":"2009","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"3","key":"32_9214743","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1006\/jmbi.1990.9999","volume":"215","author":"Altschul","year":"1990","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"1","key":"33_8448214","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"Smith","year":"1981","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"key":"34_24712619","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1137\/0222058","volume":"22","year":"1993","journal-title":"SIAM J COMPUT"},{"issue":"3","key":"35_16993340","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1093\/bioinformatics\/18.3.440","volume":"18","author":"Ma","year":"2002","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"9","key":"36_35097605","doi-asserted-by":"publisher","first-page":"1527","DOI":"10.1101\/gr.091868.109","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"37_35041889","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1186\/1471-2105-10-175","volume":"10","author":"Homer","year":"2009","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"4","key":"40_6384794","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1038\/70570","volume":"23","author":"Marth","year":"1999","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"3","key":"41_5716578","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1089\/cmb.1997.4.369","volume":"4","author":"Anson","year":"1997","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"9","key":"42_35283709","doi-asserted-by":"publisher","first-page":"1542","DOI":"10.1101\/gr.092072.109","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"5","key":"43_28300018","doi-asserted-by":"publisher","first-page":"659","DOI":"10.1101\/gr.6151507","volume":"17","year":"2007","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"13","key":"44_31321773","doi-asserted-by":"publisher","first-page":"i59","DOI":"10.1093\/bioinformatics\/btn176","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"5849","key":"45_29502362","doi-asserted-by":"publisher","first-page":"420","DOI":"10.1126\/science.1149504","volume":"318","year":"2007","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"2","key":"46_34139407","doi-asserted-by":"publisher","first-page":"R23","DOI":"10.1186\/gb-2009-10-2-r23","volume":"10","author":"Korbel","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"7","key":"47_34863066","doi-asserted-by":"publisher","first-page":"1270","DOI":"10.1101\/gr.088633.108","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7","key":"48_34975745","doi-asserted-by":"publisher","first-page":"473","DOI":"10.1038\/nmeth.f.256","volume":"6","author":"Lee","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"9","key":"49_35448468","doi-asserted-by":"publisher","first-page":"677","DOI":"10.1038\/nmeth.1363","volume":"6","author":"Chen","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"21","key":"50_35165863","doi-asserted-by":"publisher","first-page":"2865","DOI":"10.1093\/bioinformatics\/btp394","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"51_34485391","doi-asserted-by":"publisher","first-page":"R32","DOI":"10.1186\/gb-2009-10-3-r32","volume":"10","author":"Harismendy","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"9","key":"52_35378041","doi-asserted-by":"publisher","first-page":"1586","DOI":"10.1101\/gr.092981.109","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"12","key":"53_21747756","doi-asserted-by":"publisher","first-page":"4534","DOI":"10.1073\/pnas.0511340103","volume":"103","year":"2006","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"6","key":"54_31220350","doi-asserted-by":"publisher","first-page":"722","DOI":"10.1038\/ng.128","volume":"40","author":"Campbell","year":"2008","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"1","key":"55_32755797","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1038\/nmeth.1276","volume":"6","author":"Chiang","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"7011","key":"56_18481390","doi-asserted-by":"publisher","first-page":"931","DOI":"10.1038\/nature03001","volume":"431","year":"2004","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"9","key":"57_35619335","doi-asserted-by":"publisher","first-page":"R98","DOI":"10.1186\/gb-2009-10-9-r98","volume":"10","author":"Schneeberger","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/11\/1\/3\/485380\/bbp058.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,2,25]],"date-time":"2019-02-25T13:38:48Z","timestamp":1551101928000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbp058"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,1,1]]},"references-count":54,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2010,1,22]]},"published-print":{"date-parts":[[2010,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbp058","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,1,1]]}}}