{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,11]],"date-time":"2026-06-11T03:07:19Z","timestamp":1781147239593,"version":"3.54.1"},"reference-count":130,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2011,9,1]]},"DOI":"10.1093\/bib\/bbr030","type":"journal-article","created":{"date-parts":[[2011,6,21]],"date-time":"2011-06-21T03:53:22Z","timestamp":1308628402000},"page":"379-391","source":"Crossref","is-referenced-by-count":211,"title":["Computational methods for Gene Orthology inference"],"prefix":"10.1093","volume":"12","author":[{"given":"D. M.","family":"Kristensen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Y. I.","family":"Wolf","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A. R.","family":"Mushegian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E. V.","family":"Koonin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2011,6,19]]},"reference":[{"issue":"suppl_1","key":"1_38665532","doi-asserted-by":"publisher","first-page":"D38","DOI":"10.1093\/nar\/gkq1172","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"2_38850908","doi-asserted-by":"publisher","first-page":"D295","DOI":"10.1093\/nar\/gkq1234","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"4","key":"3_22340164","doi-asserted-by":"publisher","first-page":"R31","DOI":"10.1186\/gb-2006-7-4-r31","volume":"7","author":"Hulsen","year":"2006","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"3","key":"4_5945648","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1101\/gr.8.3.163","volume":"8","author":"Eisen","year":"1998","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"2","key":"5_18003768","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1093\/bioinformatics\/bth021","volume":"20","author":"Sjolander","year":"2004","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"2","key":"6_35060803","doi-asserted-by":"publisher","first-page":"99","DOI":"10.2307\/2412448","volume":"19","year":"1970","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"},{"issue":"7","key":"7_33814371","doi-asserted-by":"publisher","first-page":"853","DOI":"10.1093\/bioinformatics\/btp070","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"8_21504479","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1146\/annurev.genet.39.073003.114725","volume":"39","author":"Koonin","year":"2005","journal-title":"Annual review of genetics","ISSN":"https:\/\/id.crossref.org\/issn\/0066-4197","issn-type":"print"},{"issue":"6","key":"9_34938053","doi-asserted-by":"publisher","first-page":"1306","DOI":"10.1002\/pro.143","volume":"18","author":"Peterson","year":"2009","journal-title":"Protein Science","ISSN":"https:\/\/id.crossref.org\/issn\/0961-8368","issn-type":"print"},{"issue":"11","key":"10_18466517","doi-asserted-by":"publisher","first-page":"544","DOI":"10.1016\/j.tig.2004.09.001","volume":"20","author":"Lynch","year":"2004","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"issue":"2","key":"12_38524384","doi-asserted-by":"publisher","first-page":"460","DOI":"10.1128\/JB.01010-10","volume":"193","year":"2011","journal-title":"Journal of Bacteriology","ISSN":"https:\/\/id.crossref.org\/issn\/0021-9193","issn-type":"print"},{"key":"13_37211564","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1186\/1745-6150-5-31","volume":"5","author":"Omelchenko","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1745-6150","issn-type":"print"},{"issue":"5","key":"14_21103059","doi-asserted-by":"publisher","first-page":"550","DOI":"10.1093\/bioinformatics\/bti782","volume":"22","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"5","key":"15_6569145","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1016\/S0168-9525(00)02005-9","volume":"16","author":"Fitch","year":"2000","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"issue":"14","key":"16_19333763","doi-asserted-by":"publisher","first-page":"4626","DOI":"10.1093\/nar\/gki775","volume":"33","author":"Makarova","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"9","key":"17_35687302","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1186\/gb-2009-10-9-403","volume":"10","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"4","key":"18_16221949","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1089\/cmb.1995.2.493","volume":"2","author":"Mirkin","year":"1995","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"2","key":"19_16759848","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1006\/mpev.1996.0390","volume":"7","author":"Page","year":"1997","journal-title":"Molecular phylogenetics and evolution","ISSN":"https:\/\/id.crossref.org\/issn\/1055-7903","issn-type":"print"},{"issue":"9","key":"20_11348868","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1093\/bioinformatics\/17.9.821","volume":"17","author":"Zmasek","year":"2001","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"21_36800156","doi-asserted-by":"publisher","first-page":"e9490","DOI":"10.1371\/journal.pone.0009490","volume":"5","author":"Price","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"7","key":"22_34615936","doi-asserted-by":"publisher","first-page":"1641","DOI":"10.1093\/molbev\/msp077","volume":"26","year":"2009","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"5934","key":"23_35064046","doi-asserted-by":"publisher","first-page":"1561","DOI":"10.1126\/science.1171243","volume":"324","author":"Liu","year":"2009","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"5","key":"24_34086998","doi-asserted-by":"publisher","first-page":"696","DOI":"10.1080\/10635150390235520","volume":"52","year":"2003","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"},{"issue":"Suppl_3","key":"25_33390387","doi-asserted-by":"publisher","first-page":"S107","DOI":"10.1098\/rsbl.2003.0124","volume":"271","author":"Hughes","year":"2004","journal-title":"Proceedings of the Royal Society B: Biological Sciences","ISSN":"https:\/\/id.crossref.org\/issn\/0962-8452","issn-type":"print"},{"issue":"5","key":"26_34039724","doi-asserted-by":"publisher","first-page":"1067","DOI":"10.1093\/molbev\/msp026","volume":"26","year":"2009","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"2","key":"27_32702705","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1101\/gr.073585.107","volume":"19","year":"2009","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7","key":"29_29072902","doi-asserted-by":"publisher","first-page":"R141","DOI":"10.1186\/gb-2007-8-7-r141","volume":"8","author":"Hahn","year":"2007","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"key":"30_40164921","first-page":"S14","volume":"11","year":"2010","journal-title":"BMC genomics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2164","issn-type":"print"},{"issue":"3","key":"31_39706789","doi-asserted-by":"publisher","first-page":"e18093","DOI":"10.1371\/journal.pone.0018093","volume":"6","author":"Thompson","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"key":"32_38762771","doi-asserted-by":"crossref","first-page":"RRN1198","DOI":"10.1371\/currents.RRN1198","volume":"2","author":"Liu","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/2157-3999","issn-type":"print"},{"issue":"6","key":"33_10036341","first-page":"1148","volume":"9","author":"Thorne","year":"1992","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"4","key":"34_38853638","doi-asserted-by":"publisher","first-page":"1393","DOI":"10.1093\/molbev\/msq323","volume":"28","year":"2011","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"key":"35_35839340","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1111\/j.1749-6632.2009.04998.x","volume":"1178","author":"Olendzenski","year":"2009","journal-title":"Annals of the New York Academy of Sciences","ISSN":"https:\/\/id.crossref.org\/issn\/0077-8923","issn-type":"print"},{"issue":"1527","key":"36_35097476","doi-asserted-by":"publisher","first-page":"2221","DOI":"10.1098\/rstb.2009.0032","volume":"364","author":"Doolittle","year":"2009","journal-title":"Philosophical Transactions of the Royal Society B: Biological Sciences","ISSN":"https:\/\/id.crossref.org\/issn\/0962-8436","issn-type":"print"},{"key":"37_35688643","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1186\/1745-6150-4-34","volume":"4","author":"Bapteste","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1745-6150","issn-type":"print"},{"key":"38_35688642","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1186\/1745-6150-4-33","volume":"4","author":"Koonin","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1745-6150","issn-type":"print"},{"issue":"1","key":"39_39174071","doi-asserted-by":"publisher","first-page":"e1001284","DOI":"10.1371\/journal.pgen.1001284","volume":"7","author":"Treangen","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1553-7390","issn-type":"print"},{"issue":"0","key":"40_38213457","doi-asserted-by":"publisher","first-page":"745","DOI":"10.1093\/gbe\/evq062","volume":"2","year":"2010","journal-title":"Genome Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/1759-6653","issn-type":"print"},{"issue":"29","key":"41_31522863","doi-asserted-by":"publisher","first-page":"10039","DOI":"10.1073\/pnas.0800679105","volume":"105","year":"2008","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"9","key":"42_19385406","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1038\/nrmicro1204","volume":"3","author":"Gogarten","year":"2005","journal-title":"Nature reviews. Microbiology","ISSN":"https:\/\/id.crossref.org\/issn\/1740-1526","issn-type":"print"},{"key":"43_17907884","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1146\/annurev.genet.37.050503.084247","volume":"37","author":"Boucher","year":"2003","journal-title":"Annual review of genetics","ISSN":"https:\/\/id.crossref.org\/issn\/0066-4197","issn-type":"print"},{"issue":"12","key":"44_17345930","doi-asserted-by":"crossref","first-page":"2226","DOI":"10.1093\/oxfordjournals.molbev.a004046","volume":"19","author":"Gogarten","year":"2002","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"1","key":"45_11308862","doi-asserted-by":"publisher","first-page":"709","DOI":"10.1146\/annurev.micro.55.1.709","volume":"55","author":"Koonin","year":"2001","journal-title":"Annual review of microbiology","ISSN":"https:\/\/id.crossref.org\/issn\/0066-4227","issn-type":"print"},{"issue":"9","key":"46_17228755","doi-asserted-by":"publisher","first-page":"1272","DOI":"10.1093\/bioinformatics\/18.9.1272","volume":"18","author":"Hollich","year":"2002","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"47_16908261","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1093\/bioinformatics\/18.1.92","volume":"18","author":"Storm","year":"2002","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"10","key":"48_17841489","doi-asserted-by":"publisher","first-page":"2353","DOI":"10.1101\/gr1305203","volume":"13","author":"Storm","year":"2003","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"49_17443429","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/1471-2105-3-14","volume":"3","author":"Zmasek","year":"2002","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"11","key":"50_18878978","doi-asserted-by":"publisher","first-page":"2596","DOI":"10.1093\/bioinformatics\/bti325","volume":"21","year":"2005","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"5338","key":"51_5789801","doi-asserted-by":"publisher","first-page":"631","DOI":"10.1126\/science.278.5338.631","volume":"278","author":"Tatusov","year":"1997","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"key":"52_17878496","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1186\/1471-2105-4-41","volume":"4","author":"Tatusov","year":"2003","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"9","key":"53_17795155","doi-asserted-by":"publisher","first-page":"2178","DOI":"10.1101\/gr.1224503","volume":"13","author":"Li","year":"2003","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7","key":"54_21466292","doi-asserted-by":"publisher","first-page":"779","DOI":"10.1093\/bioinformatics\/btl009","volume":"22","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"55_23757464","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1186\/1471-2105-8-83","volume":"8","author":"van der Heijden","year":"2007","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"suppl_1","key":"56_29953132","doi-asserted-by":"publisher","first-page":"D735","DOI":"10.1093\/nar\/gkm1005","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"57_30950050","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1186\/1471-2164-9-183","volume":"9","author":"Conte","year":"2008","journal-title":"BMC genomics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2164","issn-type":"print"},{"issue":"suppl_1","key":"58_38581268","doi-asserted-by":"publisher","first-page":"D556","DOI":"10.1093\/nar\/gkq1109","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_2","key":"59_34822061","doi-asserted-by":"publisher","first-page":"W84","DOI":"10.1093\/nar\/gkp373","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"6","key":"60_28883709","doi-asserted-by":"publisher","first-page":"R109","DOI":"10.1186\/gb-2007-8-8-109","volume":"8","author":"Huerta-Cepas","year":"2007","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"5","key":"61_38819751","doi-asserted-by":"publisher","first-page":"e32","DOI":"10.1093\/nar\/gkq953","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"10","key":"62_19449889","doi-asserted-by":"publisher","first-page":"1456","DOI":"10.1101\/gr.3672305","volume":"15","year":"2005","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"19","key":"63_16408242","doi-asserted-by":"publisher","first-page":"10268","DOI":"10.1073\/pnas.93.19.10268","volume":"93","author":"Mushegian","year":"1996","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"6","key":"64_10752332","doi-asserted-by":"publisher","first-page":"2896","DOI":"10.1073\/pnas.96.6.2896","volume":"96","author":"Overbeek","year":"1999","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"3","key":"65_9214743","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1006\/jmbi.1990.9999","volume":"215","author":"Altschul","year":"1990","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"key":"66_36362226","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"13","key":"67_17690861","doi-asserted-by":"publisher","first-page":"3795","DOI":"10.1093\/nar\/gkg573","volume":"31","author":"Lopez","year":"2003","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"1","key":"68_8448214","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"Smith","year":"1981","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"13","key":"69_20175428","doi-asserted-by":"publisher","first-page":"1710","DOI":"10.1093\/bioinformatics\/btg213","volume":"19","author":"Wall","year":"2003","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"11","key":"70_32059053","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1016\/j.tig.2008.08.009","volume":"24","author":"Kuzniar","year":"2008","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"issue":"18","key":"71_34535101","doi-asserted-by":"publisher","first-page":"7273","DOI":"10.1073\/pnas.0901808106","volume":"106","year":"2009","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"21","key":"72_32318863","doi-asserted-by":"publisher","first-page":"6688","DOI":"10.1093\/nar\/gkn668","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"3","key":"73_18314354","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1016\/j.devcel.2004.08.010","volume":"7","author":"King","year":"2004","journal-title":"Developmental cell","ISSN":"https:\/\/id.crossref.org\/issn\/1534-5807","issn-type":"print"},{"issue":"1","key":"74_18779268","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1016\/j.jmb.2005.02.007","volume":"348","author":"Ekman","year":"2005","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"2","key":"75_11214118","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1006\/jmbi.2001.4776","volume":"310","author":"Apic","year":"2001","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"6","key":"76_11226747","doi-asserted-by":"crossref","first-page":"540","DOI":"10.1007\/s002390010184","volume":"52","author":"Koski","year":"2001","journal-title":"Journal of Molecular Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/1432-1432","issn-type":"print"},{"issue":"1","key":"77_11008811","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1093\/nar\/29.1.22","volume":"29","author":"Tatusov","year":"2001","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"78_29649806","doi-asserted-by":"publisher","first-page":"D250","DOI":"10.1093\/nar\/gkm796","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"suppl_1","key":"79_35947057","doi-asserted-by":"publisher","first-page":"D190","DOI":"10.1093\/nar\/gkp951","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"12","key":"80_37205340","doi-asserted-by":"publisher","first-page":"1481","DOI":"10.1093\/bioinformatics\/btq229","volume":"26","year":"2010","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"35","key":"81_22513366","doi-asserted-by":"publisher","first-page":"13126","DOI":"10.1073\/pnas.0605709103","volume":"103","year":"2006","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"42","key":"82_22774941","doi-asserted-by":"publisher","first-page":"15611","DOI":"10.1073\/pnas.0607117103","volume":"103","year":"2006","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"key":"83_29941663","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1186\/1745-6150-2-33","volume":"2","author":"Makarova","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1745-6150","issn-type":"print"},{"issue":"8","key":"84_39172328","doi-asserted-by":"publisher","first-page":"1806","DOI":"10.1128\/JB.01311-10","volume":"193","year":"2011","journal-title":"Journal of Bacteriology","ISSN":"https:\/\/id.crossref.org\/issn\/0021-9193","issn-type":"print"},{"key":"85_36355841","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1186\/1743-422X-6-223","volume":"6","author":"Yutin","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1743-422X","issn-type":"print"},{"issue":"10","key":"86_10310977","doi-asserted-by":"publisher","first-page":"5334","DOI":"10.1073\/pnas.97.10.5334","volume":"97","author":"Montague","year":"2000","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"suppl_1","key":"88_21287636","doi-asserted-by":"publisher","first-page":"D363","DOI":"10.1093\/nar\/gkj123","volume":"34","author":"Chen","year":"2006","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"5","key":"89_11442414","doi-asserted-by":"publisher","first-page":"1041","DOI":"10.1006\/jmbi.2000.5197","volume":"314","author":"Remm","year":"2001","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"suppl_1","key":"90_18802125","doi-asserted-by":"publisher","first-page":"D476","DOI":"10.1093\/nar\/gki107","volume":"33","author":"O'Brien","year":"2005","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"14","key":"91_22404431","doi-asserted-by":"publisher","first-page":"e9","DOI":"10.1093\/bioinformatics\/btl213","volume":"22","author":"Alexeyenko","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"suppl_1","key":"92_35921019","doi-asserted-by":"publisher","first-page":"D196","DOI":"10.1093\/nar\/gkp931","volume":"38","year":"2010","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"94_32817873","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1186\/1471-2105-9-518","volume":"9","author":"Roth","year":"2008","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"suppl_1","key":"95_38715301","doi-asserted-by":"publisher","first-page":"D289","DOI":"10.1093\/nar\/gkq1238","volume":"39","year":"2011","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"16","key":"96_22275203","doi-asserted-by":"publisher","first-page":"2044","DOI":"10.1093\/bioinformatics\/btl286","volume":"22","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"97_38517501","first-page":"S6","volume":"11","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"98_39102678","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/1471-2105-12-11","volume":"12","author":"Linard","year":"2011","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"7018","key":"99_18573297","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1038\/nature03154","volume":"432","author":"Hillier","year":"2004","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"2","key":"100_32312012","doi-asserted-by":"publisher","first-page":"298","DOI":"10.1016\/j.biocel.2008.09.015","volume":"41","author":"Koonin","year":"2009","journal-title":"The international journal of biochemistry &amp; cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1357-2725","issn-type":"print"},{"issue":"7","key":"101_37465333","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1038\/nrg2810","volume":"11","author":"Koonin","year":"2010","journal-title":"Nature reviews. Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1471-0056","issn-type":"print"},{"issue":"1","key":"102_18603045","doi-asserted-by":"publisher","first-page":"98","DOI":"10.1101\/gr.3002305","volume":"15","year":"2005","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"103_36349430","doi-asserted-by":"publisher","first-page":"630","DOI":"10.1186\/1471-2164-10-630","volume":"10","author":"Jun","year":"2009","journal-title":"BMC genomics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2164","issn-type":"print"},{"issue":"1","key":"104_23451239","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1016\/j.tig.2006.10.004","volume":"23","author":"Zdobnov","year":"2007","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"issue":"15","key":"105_18910854","doi-asserted-by":"publisher","first-page":"3355","DOI":"10.1016\/j.febslet.2005.04.006","volume":"579","author":"Zdobnov","year":"2005","journal-title":"FEBS Letters","ISSN":"https:\/\/id.crossref.org\/issn\/1873-3468","issn-type":"print"},{"issue":"1","key":"106_32368276","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1128\/JB.01237-08","volume":"191","year":"2009","journal-title":"Journal of Bacteriology","ISSN":"https:\/\/id.crossref.org\/issn\/0021-9193","issn-type":"print"},{"issue":"1","key":"107_11044459","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1016\/S0168-9525(00)02159-4","volume":"17","author":"Suyama","year":"2001","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"issue":"3","key":"108_20049110","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1101\/gr.GR-1619R","volume":"11","year":"2001","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"11","key":"109_6015176","doi-asserted-by":"publisher","first-page":"5849","DOI":"10.1073\/pnas.95.11.5849","volume":"95","author":"Huynen","year":"1998","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"10","key":"110_17044090","doi-asserted-by":"publisher","first-page":"2212","DOI":"10.1093\/nar\/30.10.2212","volume":"30","author":"Rogozin","year":"2002","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"19","key":"111_17269849","doi-asserted-by":"publisher","first-page":"4264","DOI":"10.1093\/nar\/gkf549","volume":"30","author":"Rogozin","year":"2002","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"2","key":"112_18099245","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1038\/nrmicro751","volume":"1","author":"Koonin","year":"2003","journal-title":"Nature reviews. Microbiology","ISSN":"https:\/\/id.crossref.org\/issn\/1740-1526","issn-type":"print"},{"issue":"9","key":"113_16447163","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1016\/0168-9525(96)20010-1","volume":"12","author":"Koonin","year":"1996","journal-title":"Trends in genetics : TIG","ISSN":"https:\/\/id.crossref.org\/issn\/0168-9525","issn-type":"print"},{"key":"114_40164922","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1023\/A:1003705601428","volume":"106","year":"1999","ISSN":"https:\/\/id.crossref.org\/issn\/1573-6857","issn-type":"print"},{"issue":"8","key":"115_35440009","doi-asserted-by":"publisher","first-page":"e6515","DOI":"10.1371\/journal.pone.0006515","volume":"4","author":"Rolland","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"key":"116_17878490","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1186\/1471-2105-4-35","volume":"4","author":"Cannon","year":"2003","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"9","key":"117_23056505","doi-asserted-by":"publisher","first-page":"e133","DOI":"10.1371\/journal.pcbi.0020133","volume":"2","author":"Goodstadt","year":"2006","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"13","key":"118_29082220","doi-asserted-by":"publisher","first-page":"i549","DOI":"10.1093\/bioinformatics\/btm193","volume":"23","author":"Wapinski","year":"2007","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"suppl_1","key":"119_32134031","doi-asserted-by":"publisher","first-page":"D448","DOI":"10.1093\/nar\/gkn684","volume":"37","year":"2009","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"3","key":"120_31372529","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1142\/S0219720008003540","volume":"6","author":"Fu","year":"2008","journal-title":"Journal of bioinformatics and computational biology","ISSN":"https:\/\/id.crossref.org\/issn\/0219-7200","issn-type":"print"},{"key":"121_36510135","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1186\/1471-2105-11-10","volume":"11","author":"Shi","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"122_22199070","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1186\/1471-2105-7-270","volume":"7","author":"Fulton","year":"2006","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"1","key":"123_23614761","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1109\/TCBB.2007.1004","volume":"4","author":"Vashist","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1545-5963","issn-type":"print"},{"key":"124_38665524","first-page":"S7","volume":"11","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"10","key":"125_32549729","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1186\/gb-2008-9-10-235","volume":"9","author":"Gabaldon","year":"2008","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"1","key":"126_33544237","doi-asserted-by":"publisher","first-page":"e1000262","DOI":"10.1371\/journal.pcbi.1000262","volume":"5","author":"Altenhoff","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"4","key":"127_28398035","doi-asserted-by":"publisher","first-page":"e383","DOI":"10.1371\/journal.pone.0000383","volume":"2","author":"Chen","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"4","key":"128_6281000","doi-asserted-by":"publisher","first-page":"354","DOI":"10.1177\/096228029800700404","volume":"7","author":"Hui","year":"1998","journal-title":"Statistical Methods in Medical Research","ISSN":"https:\/\/id.crossref.org\/issn\/0962-2802","issn-type":"print"},{"key":"129_34209308","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1111\/j.0006-341X.2004.00187.x","volume":"60","year":"2004","ISSN":"https:\/\/id.crossref.org\/issn\/1541-0420","issn-type":"print"},{"issue":"6983","key":"130_18128403","doi-asserted-by":"publisher","first-page":"617","DOI":"10.1038\/nature02424","volume":"428","author":"Kellis","year":"2004","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"10","key":"131_19413782","doi-asserted-by":"publisher","first-page":"e314","DOI":"10.1371\/journal.pbio.0030314","volume":"3","author":"Dehal","year":"2005","journal-title":"PLoS biology","ISSN":"https:\/\/id.crossref.org\/issn\/1544-9173","issn-type":"print"},{"issue":"1","key":"132_10309081","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"1","key":"133_6399261","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1093\/nar\/28.1.304","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"3","key":"134_21089294","doi-asserted-by":"publisher","first-page":"530","DOI":"10.1093\/molbev\/msj054","volume":"23","year":"2006","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/12\/5\/379\/751564\/bbr030.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,8,22]],"date-time":"2017-08-22T19:17:26Z","timestamp":1503429446000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbr030"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,6,19]]},"references-count":130,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2011,9,22]]},"published-print":{"date-parts":[[2011,9,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbr030","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,6,19]]}}}