{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,2]],"date-time":"2026-04-02T08:18:49Z","timestamp":1775117929747,"version":"3.50.1"},"reference-count":55,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2011,9,1]]},"DOI":"10.1093\/bib\/bbr045","type":"journal-article","created":{"date-parts":[[2011,9,22]],"date-time":"2011-09-22T09:33:49Z","timestamp":1316684029000},"page":"392-400","source":"Crossref","is-referenced-by-count":128,"title":["Models, algorithms and programs for phylogeny reconciliation"],"prefix":"10.1093","volume":"12","author":[{"given":"J.-P.","family":"Doyon","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"V.","family":"Ranwez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"V.","family":"Daubin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"V.","family":"Berry","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,9,22]]},"reference":[{"issue":"13","key":"1_31321746","doi-asserted-by":"publisher","first-page":"i132","DOI":"10.1093\/bioinformatics\/btn150","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"2_39174071","doi-asserted-by":"publisher","first-page":"e1001284","DOI":"10.1371\/journal.pgen.1001284","volume":"7","author":"Treangen","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1553-7390","issn-type":"print"},{"issue":"4","key":"3_35906711","doi-asserted-by":"publisher","first-page":"224","DOI":"10.1016\/j.tree.2009.09.007","volume":"25","author":"Boussau","year":"2010","journal-title":"Trends in Ecology & Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0169-5347","issn-type":"print"},{"issue":"2","key":"4_32836634","doi-asserted-by":"publisher","first-page":"132","DOI":"10.1093\/sysbio\/28.2.132","volume":"28","year":"1979","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"},{"issue":"2","key":"5_16493294","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1006\/mpev.1996.0071","volume":"6","author":"Guig\u00a0\u00a0","year":"1996","journal-title":"Molecular phylogenetics and evolution","ISSN":"https:\/\/id.crossref.org\/issn\/1055-7903","issn-type":"print"},{"issue":"1","key":"6_32930860","doi-asserted-by":"publisher","first-page":"58","DOI":"10.2307\/2413581","volume":"43","year":"1994","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"},{"key":"7_37473010","doi-asserted-by":"publisher","first-page":"324","DOI":"10.1186\/1471-2105-11-324","volume":"11","author":"Abby","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"8_21615827","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1186\/1471-2148-6-15","volume":"6","author":"Beiko","year":"2006","journal-title":"BMC evolutionary biology [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2148","issn-type":"print"},{"issue":"11","key":"10_18878978","doi-asserted-by":"publisher","first-page":"2596","DOI":"10.1093\/bioinformatics\/bti325","volume":"21","year":"2005","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"11_16908261","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1093\/bioinformatics\/18.1.92","volume":"18","author":"Storm","year":"2002","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"12_23757464","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1186\/1471-2105-8-83","volume":"8","author":"van der Heijden","year":"2007","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"7158","key":"13_29386952","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1038\/nature06107","volume":"449","author":"Wapinski","year":"2007","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"key":"14_17443429","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/1471-2105-3-14","volume":"3","author":"Zmasek","year":"2002","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"4","key":"15_28398035","doi-asserted-by":"publisher","first-page":"e383","DOI":"10.1371\/journal.pone.0000383","volume":"2","author":"Chen","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"1","key":"16_33544237","doi-asserted-by":"publisher","first-page":"e1000262","DOI":"10.1371\/journal.pcbi.1000262","volume":"5","author":"Altenhoff","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"key":"17_37211575","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1186\/1471-2148-10-123","volume":"10","author":"Rivera","year":"2010","journal-title":"BMC evolutionary biology [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2148","issn-type":"print"},{"issue":"7328","key":"18_38865316","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1038\/nature09649","volume":"469","author":"David","year":"2011","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"14","key":"19_34347384","doi-asserted-by":"publisher","first-page":"5714","DOI":"10.1073\/pnas.0806251106","volume":"106","year":"2009","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"2","key":"20_21890423","doi-asserted-by":"publisher","first-page":"320","DOI":"10.1089\/cmb.2006.13.320","volume":"13","author":"Durand","year":"2006","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"1","key":"21_37694202","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1093\/molbev\/msq189","volume":"28","year":"2011","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"13","key":"22_29082220","doi-asserted-by":"publisher","first-page":"i549","DOI":"10.1093\/bioinformatics\/btm193","volume":"23","author":"Wapinski","year":"2007","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"23_31322053","first-page":"S3","volume":"7","year":"2007","journal-title":"BMC evolutionary biology [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2148","issn-type":"print"},{"issue":"9","key":"24_28600887","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1016\/S0169-5347(98)01438-4","volume":"13","author":"Page","year":"1998","journal-title":"Trends in Ecology & Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0169-5347","issn-type":"print"},{"key":"26_26473104","doi-asserted-by":"crossref","first-page":"1291","DOI":"10.1111\/j.1365-2699.2005.01315.x","volume":"32","year":"2005","journal-title":"J BIOGEOGRAPHY"},{"key":"27_31322179","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1016\/j.tcs.2005.05.016","volume":"347","year":"2005","journal-title":"THEOR COMPUT SCI"},{"key":"28_40808451","doi-asserted-by":"crossref","first-page":"378","DOI":"10.1016\/j.tcs.2006.05.019","volume":"359","year":"2006","journal-title":"THEOR COMPUT SCI"},{"issue":"2","key":"29_16851455","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1089\/cmb.1997.4.177","volume":"4","author":"Zhang","year":"1997","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"4","key":"30_16221949","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1089\/cmb.1995.2.493","volume":"2","author":"Mirkin","year":"1995","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"9","key":"31_11348868","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1093\/bioinformatics\/17.9.821","volume":"17","author":"Zmasek","year":"2001","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"10","key":"34_35606424","doi-asserted-by":"publisher","first-page":"1399","DOI":"10.1089\/cmb.2009.0095","volume":"16","author":"Doyon","year":"2009","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"key":"35_40808452","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1007\/978-3-642-02008-7_4","volume":"5541","year":"2009","journal-title":"RES COMPUT MOL BIOL"},{"issue":"7","key":"37_29072902","doi-asserted-by":"publisher","first-page":"R141","DOI":"10.1186\/gb-2007-8-7-r141","volume":"8","author":"Hahn","year":"2007","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"issue":"2","key":"38_22421636","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1007\/s00239-005-0096-1","volume":"63","author":"Berglund-Sonnhammer","year":"2006","journal-title":"Journal of Molecular Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/1432-1432","issn-type":"print"},{"issue":"8","key":"40_32013241","doi-asserted-by":"publisher","first-page":"981","DOI":"10.1089\/cmb.2008.0092","volume":"15","author":"Vernot","year":"2008","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"13","key":"41_29082220","doi-asserted-by":"crossref","first-page":"i549","DOI":"10.1093\/bioinformatics\/btm193","volume":"23","year":"2007","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"90001","key":"42_17716340","doi-asserted-by":"publisher","first-page":"i7","DOI":"10.1093\/bioinformatics\/btg1000","volume":"19","author":"Arvestad","year":"2003","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"43_23661459","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1093\/bib\/bbk006","volume":"7","year":"2006","journal-title":"Briefings in Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1467-5463","issn-type":"print"},{"key":"44_35419780","first-page":"1","volume":"56","year":"2009","journal-title":"J ACM"},{"issue":"4","key":"45_35419776","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1093\/sysbio\/syp046","volume":"58","year":"2009","journal-title":"Systematic Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1063-5157","issn-type":"print"},{"key":"48_40808453","doi-asserted-by":"crossref","first-page":"S15","DOI":"10.1186\/1471-2105-12-S1-S15","volume":"12","year":"2011","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"9","key":"50_35211466","doi-asserted-by":"publisher","first-page":"2087","DOI":"10.1093\/molbev\/msp123","volume":"26","year":"2009","journal-title":"Molecular Biology and Evolution","ISSN":"https:\/\/id.crossref.org\/issn\/0737-4038","issn-type":"print"},{"issue":"8","key":"51_19382340","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1038\/nrg1659","volume":"6","author":"Kumar","year":"2005","journal-title":"Nature reviews. Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1471-0056","issn-type":"print"},{"issue":"12","key":"52_29835744","doi-asserted-by":"publisher","first-page":"1932","DOI":"10.1101\/gr.7105007","volume":"17","year":"2007","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"10","key":"53_21796066","doi-asserted-by":"publisher","first-page":"1269","DOI":"10.1093\/bioinformatics\/btl097","volume":"22","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"54_37939545","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1089\/cmb.2009.0240","volume":"18","author":"Ovadia","year":"2011","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"2","key":"55_39091828","doi-asserted-by":"publisher","first-page":"517","DOI":"10.1109\/TCBB.2010.14","volume":"8","author":"Tofigh","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1545-5963","issn-type":"print"},{"issue":"1","key":"56_21536424","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1016\/j.jbi.2005.08.006","volume":"39","author":"Charleston","year":"2006","journal-title":"Journal of biomedical informatics","ISSN":"https:\/\/id.crossref.org\/issn\/1532-0464","issn-type":"print"},{"issue":"4","key":"57_30306792","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1016\/j.thbio.2005.01.003","volume":"123","author":"Merkle","year":"2005","ISSN":"https:\/\/id.crossref.org\/issn\/1431-7613","issn-type":"print"},{"issue":"1","key":"58_33478571","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1089\/cmb.2008.0084","volume":"16","author":"Libeskind-Hadas","year":"2009","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"key":"60_40808454","doi-asserted-by":"crossref","first-page":"S60","DOI":"10.1186\/1471-2105-11-S1-S60","volume":"11","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"61_40808455","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/S0025-5564(97)10012-8","volume":"149","year":"1998","journal-title":"MATHL BIOSCI"},{"key":"64_30581021","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1186\/1471-2148-8-77","volume":"8","author":"Akerborg","year":"2008","journal-title":"BMC evolutionary biology [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2148","issn-type":"print"},{"issue":"17","key":"68_35061638","doi-asserted-by":"publisher","first-page":"2286","DOI":"10.1093\/bioinformatics\/btp368","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"2","key":"69_17474883","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1093\/bioinformatics\/19.2.301","volume":"19","author":"Sanderson","year":"2003","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"70_36703061","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1186\/1748-7188-5-16","volume":"5","author":"Conow","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1748-7188","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/12\/5\/392\/755689\/bbr045.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,16]],"date-time":"2019-06-16T05:28:56Z","timestamp":1560662936000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbr045"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,9,1]]},"references-count":55,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2011,9,22]]},"published-print":{"date-parts":[[2011,9,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbr045","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,9,1]]}}}