{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T10:38:20Z","timestamp":1790246300697,"version":"4.1.0"},"reference-count":70,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2014,5,1]]},"DOI":"10.1093\/bib\/bbt078","type":"journal-article","created":{"date-parts":[[2013,11,6]],"date-time":"2013-11-06T22:13:33Z","timestamp":1383776013000},"page":"419-430","source":"Crossref","is-referenced-by-count":42,"title":["Applications of alignment-free methods in epigenomics"],"prefix":"10.1093","volume":"15","author":[{"given":"L.","family":"Pinello","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G.","family":"Lo Bosco","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G.-C.","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2013,11,6]]},"reference":[{"issue":"7414","key":"1_43581926","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1038\/nature11247","volume":"489","author":"Bernstein","year":"2012","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"3","key":"2_9214743","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1006\/jmbi.1990.9999","volume":"215","author":"Altschul","year":"1990","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"4693","key":"3_13449003","doi-asserted-by":"publisher","first-page":"1435","DOI":"10.1126\/science.2983426","volume":"227","author":"Lipman","year":"1985","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"key":"4_42439093","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1038\/nmeth.1371","volume":"6","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"7","key":"5_37428476","doi-asserted-by":"crossref","first-page":"476","DOI":"10.1038\/nrg2795","volume":"11","author":"Hawkins","year":"2010","journal-title":"Nature reviews. Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1471-0056","issn-type":"print"},{"issue":"11","key":"6_32296541","doi-asserted-by":"publisher","first-page":"1046","DOI":"10.1039\/b803580f","volume":"4","author":"Miele","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1742-2051","issn-type":"print"},{"issue":"4","key":"7_17519774","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1093\/bioinformatics\/btg005","volume":"19","author":"Vinga","year":"2003","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"7","key":"8_38411247","doi-asserted-by":"publisher","first-page":"331","DOI":"10.6026\/97320630004331","volume":"4","author":"Lim","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/0973-2063","issn-type":"print"},{"issue":"3","key":"9_41949494","doi-asserted-by":"publisher","first-page":"297","DOI":"10.1002\/wsbm.1165","volume":"4","author":"Yuan","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1939-005X","issn-type":"print"},{"issue":"4","key":"10_23700602","doi-asserted-by":"publisher","first-page":"669","DOI":"10.1016\/j.cell.2007.01.033","volume":"128","author":"Bernstein","year":"2007","journal-title":"Cell","ISSN":"https:\/\/id.crossref.org\/issn\/0092-8674","issn-type":"print"},{"issue":"3","key":"11_10935184","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1016\/S0092-8674(00)81958-3","volume":"98","author":"Kornberg","year":"1999","journal-title":"Cell","ISSN":"https:\/\/id.crossref.org\/issn\/0092-8674","issn-type":"print"},{"issue":"5532","key":"12_11274222","doi-asserted-by":"publisher","first-page":"1074","DOI":"10.1126\/science.1063127","volume":"293","author":"Jenuwein","year":"2001","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"1","key":"13_11468445","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1101\/gad.947102","volume":"16","author":"Bird","year":"2002","journal-title":"Genes &amp; Development","ISSN":"https:\/\/id.crossref.org\/issn\/0890-9369","issn-type":"print"},{"issue":"5500","key":"14_10585841","doi-asserted-by":"publisher","first-page":"2306","DOI":"10.1126\/science.290.5500.2306","volume":"290","author":"Ren","year":"2000","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"4","key":"15_28749794","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1016\/j.cell.2007.05.009","volume":"129","author":"Barski","year":"2007","journal-title":"Cell","ISSN":"https:\/\/id.crossref.org\/issn\/0092-8674","issn-type":"print"},{"issue":"7153","key":"16_29182157","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1038\/nature06008","volume":"448","author":"Mikkelsen","year":"2007","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"7205","key":"17_31429420","doi-asserted-by":"publisher","first-page":"766","DOI":"10.1038\/nature07107","volume":"454","author":"Meissner","year":"2008","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"8","key":"18_40224593","doi-asserted-by":"publisher","first-page":"768","DOI":"10.1038\/ng.865","volume":"43","author":"Hansen","year":"2011","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"7271","key":"19_35765026","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1038\/nature08514","volume":"462","author":"Lister","year":"2009","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"5734","key":"20_19281099","doi-asserted-by":"publisher","first-page":"626","DOI":"10.1126\/science.1112178","volume":"309","year":"2005","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"2","key":"21_32405362","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1016\/j.ygeno.2008.09.012","volume":"93","author":"Di Gesu","year":"2009","journal-title":"Genomics","ISSN":"https:\/\/id.crossref.org\/issn\/0888-7543","issn-type":"print"},{"issue":"1","key":"22_29890081","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/bioinformatics\/btm546","volume":"24","year":"2008","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"8","key":"23_37710587","doi-asserted-by":"publisher","first-page":"817","DOI":"10.1038\/nbt.1662","volume":"28","author":"Ernst","year":"2010","journal-title":"Nature biotechnology","ISSN":"https:\/\/id.crossref.org\/issn\/1087-0156","issn-type":"print"},{"issue":"3","key":"24_41995868","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1038\/nmeth.1906","volume":"9","author":"Ernst","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"key":"25_38634392","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1186\/1471-2105-11-557","volume":"11","author":"Larson","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"2","key":"26_43797555","doi-asserted-by":"publisher","first-page":"352","DOI":"10.1101\/gr.144949.112","volume":"23","year":"2013","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7339","key":"27_38892978","doi-asserted-by":"publisher","first-page":"480","DOI":"10.1038\/nature09725","volume":"471","author":"Kharchenko","year":"2011","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"key":"28_46853905","first-page":"473","volume":"473","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"6990","key":"29_18198457","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1038\/nature02625","volume":"429","author":"Egger","year":"2004","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"4","key":"30_23700604","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1016\/j.cell.2007.02.005","volume":"128","author":"Kouzarides","year":"2007","journal-title":"Cell","ISSN":"https:\/\/id.crossref.org\/issn\/0092-8674","issn-type":"print"},{"issue":"4","key":"31_40617650","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1016\/j.cell.2011.07.013","volume":"146","author":"Moazed","year":"2011","journal-title":"Cell","ISSN":"https:\/\/id.crossref.org\/issn\/0092-8674","issn-type":"print"},{"key":"32_46070893","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1038\/nsmb.2506","volume":"20","year":"2013","journal-title":"Nature structural &amp; molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/1545-9993","issn-type":"print"},{"issue":"11","key":"33_40907369","doi-asserted-by":"publisher","first-page":"1091","DOI":"10.1038\/ng.946","volume":"43","author":"Lienert","year":"2011","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"2","key":"34_33937176","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1089\/cmb.2008.18TT","volume":"16","author":"Yuan","year":"2009","journal-title":"Journal of computational biology : a journal of computational molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1066-5277","issn-type":"print"},{"issue":"8","key":"36_29015040","doi-asserted-by":"publisher","first-page":"1170","DOI":"10.1101\/gr.6101007","volume":"17","year":"2007","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"1","key":"37_30354102","doi-asserted-by":"publisher","first-page":"e13","DOI":"10.1371\/journal.pcbi.0040013","volume":"4","author":"Yuan","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"7236","key":"38_33386764","doi-asserted-by":"publisher","first-page":"362","DOI":"10.1038\/nature07667","volume":"458","author":"Kaplan","year":"2009","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"key":"39_41078759","doi-asserted-by":"publisher","first-page":"408","DOI":"10.1186\/1471-2105-12-408","volume":"12","author":"Pinello","year":"2011","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"41_46853906","first-page":"S15","volume":"12","year":"2009","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"42_46853907","doi-asserted-by":"crossref","first-page":"S13","DOI":"10.1186\/1755-8794-6-S1-S13","volume":"6","year":"2013","ISSN":"https:\/\/id.crossref.org\/issn\/1755-8794","issn-type":"print"},{"issue":"28","key":"43_22347233","doi-asserted-by":"publisher","first-page":"10713","DOI":"10.1073\/pnas.0602949103","volume":"103","year":"2006","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"14","key":"48_34872029","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"49_34218706","doi-asserted-by":"publisher","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome biology","ISSN":"https:\/\/id.crossref.org\/issn\/1465-6906","issn-type":"print"},{"key":"50_30339868","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1748-7188-3-1","volume":"3","author":"Wu","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1748-7188","issn-type":"print"},{"key":"51_46853909","first-page":"450124","volume":"2012","year":"2012","journal-title":"TheScientificWorldJournal [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1537-744X","issn-type":"print"},{"issue":"1","key":"52_22193497","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/1748-7188-1-4","volume":"1","author":"Apostolico","year":"2006","ISSN":"https:\/\/id.crossref.org\/issn\/1748-7188","issn-type":"print"},{"issue":"4","key":"53_28309718","doi-asserted-by":"publisher","first-page":"e63","DOI":"10.1371\/journal.pcbi.0030063","volume":"3","author":"Chen","year":"2007","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"key":"54_46853910","first-page":"870","volume":"19","year":"2007","journal-title":"IN LECTURE NOTES IN COMPUTER SCIENCE IDEAL"},{"issue":"7104","key":"55_22514946","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1038\/nature04979","volume":"442","author":"Segal","year":"2006","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"11","key":"56_32567395","doi-asserted-by":"publisher","first-page":"e1000216","DOI":"10.1371\/journal.pcbi.1000216","volume":"4","author":"Field","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"1","key":"58_33487310","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1016\/j.stem.2008.11.011","volume":"4","author":"Cui","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1875-9777","issn-type":"print"},{"issue":"7146","key":"59_28912819","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1038\/nature05874","volume":"447","year":"2007","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"issue":"7","key":"60_10966770","doi-asserted-by":"publisher","first-page":"582","DOI":"10.1093\/bioinformatics\/15.7.582","volume":"15","author":"Levitsky","year":"1999","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"21","key":"61_14616855","doi-asserted-by":"publisher","first-page":"4857","DOI":"10.1093\/nar\/21.21.4857","volume":"21","author":"loshikhes","year":"1993","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"64_29082458","first-page":"419","volume":"2","year":"2002","ISSN":"https:\/\/id.crossref.org\/issn\/1532-4435","issn-type":"print"},{"key":"65_44558803","doi-asserted-by":"crossref","first-page":"3250","DOI":"10.1109\/TIT.2004.838101","volume":"50","year":"2004","ISSN":"https:\/\/id.crossref.org\/issn\/0018-9448","issn-type":"print"},{"key":"66_29052090","doi-asserted-by":"publisher","first-page":"252","DOI":"10.1186\/1471-2105-8-252","volume":"8","author":"Ferragina","year":"2007","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"12","key":"70_40643385","doi-asserted-by":"publisher","first-page":"2167","DOI":"10.1101\/gr.121905.111","volume":"21","year":"2011","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"7231","key":"71_34044515","doi-asserted-by":"publisher","first-page":"854","DOI":"10.1038\/nature07730","volume":"457","author":"Visel","year":"2009","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"key":"74_46853912","first-page":"5","volume":"45","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1573-0565","issn-type":"print"},{"key":"75_38115810","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1214\/09-AOAS285","volume":"4","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6157","issn-type":"print"},{"issue":"1","key":"76_37025341","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/j.ygeno.2010.03.012","volume":"96","author":"Liu","year":"2010","journal-title":"Genomics","ISSN":"https:\/\/id.crossref.org\/issn\/0888-7543","issn-type":"print"},{"issue":"9","key":"77_40818849","doi-asserted-by":"publisher","first-page":"e24756","DOI":"10.1371\/journal.pone.0024756","volume":"6","author":"Lin","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"12","key":"78_31294203","doi-asserted-by":"publisher","first-page":"4137","DOI":"10.1093\/nar\/gkn361","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"key":"81_46853913","doi-asserted-by":"crossref","first-page":"2011","DOI":"10.1214\/08-AOS634","volume":"37","year":"2009","journal-title":"ANN STATIST"},{"key":"83_46853914","first-page":"1579","volume":"6","year":"2005","journal-title":"J MACH LEARNING RES"},{"issue":"7304","key":"84_37381447","doi-asserted-by":"publisher","first-page":"388","DOI":"10.1038\/nature09147","volume":"466","author":"Chodavarapu","year":"2010","journal-title":"Nature; Physical Science (London)","ISSN":"https:\/\/id.crossref.org\/issn\/1476-4687","issn-type":"print"},{"key":"85_45741974","doi-asserted-by":"crossref","first-page":"e53880","DOI":"10.1371\/journal.pone.0053880","volume":"8","year":"2013","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"2","key":"86_38892980","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1038\/nbt.1755","volume":"29","author":"Miller","year":"2011","journal-title":"Nature biotechnology","ISSN":"https:\/\/id.crossref.org\/issn\/1087-0156","issn-type":"print"},{"issue":"6121","key":"87_44806542","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1126\/science.1232033","volume":"339","year":"2013","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/15\/3\/419\/450784\/bbt078.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,7,31]],"date-time":"2019-07-31T23:23:52Z","timestamp":1564615432000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbt078"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,11,6]]},"references-count":70,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2014,5,12]]},"published-print":{"date-parts":[[2014,5,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbt078","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,11,6]]}}}