{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,22]],"date-time":"2026-04-22T18:26:02Z","timestamp":1776882362209,"version":"3.51.2"},"reference-count":40,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2015,3,1]]},"DOI":"10.1093\/bib\/bbu004","type":"journal-article","created":{"date-parts":[[2014,3,6]],"date-time":"2014-03-06T05:10:11Z","timestamp":1394082611000},"page":"242-254","source":"Crossref","is-referenced-by-count":49,"title":["Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data"],"prefix":"10.1093","volume":"16","author":[{"given":"A.","family":"Alkodsi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R.","family":"Louhimo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Hautaniemi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2014,3,5]]},"reference":[{"issue":"3","key":"1_18065590","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1038\/nrc1299","volume":"4","author":"Futreal","year":"2004","journal-title":"Nature reviews. Cancer","ISSN":"https:\/\/id.crossref.org\/issn\/1474-175X","issn-type":"print"},{"issue":"3","key":"2_36696584","doi-asserted-by":"publisher","first-page":"220","DOI":"10.1038\/nrm2858","volume":"11","author":"Negrini","year":"2010","journal-title":"Nature reviews. Molecular cell biology","ISSN":"https:\/\/id.crossref.org\/issn\/1471-0072","issn-type":"print"},{"issue":"2","key":"3_44118354","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1101\/gr.140301.112","volume":"23","year":"2013","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"4_30117884","doi-asserted-by":"publisher","first-page":"226","DOI":"10.1186\/1471-2407-7-226","volume":"7","author":"Baudis","year":"2007","journal-title":"BMC cancer [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2407","issn-type":"print"},{"key":"5_46149702","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1038\/nrc3431","volume":"13","year":"2013","journal-title":"Nature reviews. Cancer","ISSN":"https:\/\/id.crossref.org\/issn\/1474-175X","issn-type":"print"},{"issue":"26","key":"6_10598325","doi-asserted-by":"publisher","first-page":"1910","DOI":"10.1056\/NEJM200012283432602","volume":"343","author":"Dohner","year":"2000","journal-title":"New England Journal of Medicine","ISSN":"https:\/\/id.crossref.org\/issn\/0028-4793","issn-type":"print"},{"issue":"4","key":"7_41965410","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1038\/nmeth.1893","volume":"9","author":"Louhimo","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"issue":"5","key":"8_28806724","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1038\/ng2025","volume":"39","author":"Lahortiga","year":"2007","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"7","key":"9_34168861","doi-asserted-by":"publisher","first-page":"1209","DOI":"10.1038\/leu.2009.18","volume":"23","author":"Mullighan","year":"2009","journal-title":"Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K","ISSN":"https:\/\/id.crossref.org\/issn\/0887-6924","issn-type":"print"},{"issue":"7171","key":"10_30060825","doi-asserted-by":"publisher","first-page":"893","DOI":"10.1038\/nature06358","volume":"450","author":"Weir","year":"2007","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"issue":"5083","key":"11_10042518","doi-asserted-by":"publisher","first-page":"818","DOI":"10.1126\/science.1359641","volume":"258","author":"Kallioniemi","year":"1992","journal-title":"Science","ISSN":"https:\/\/id.crossref.org\/issn\/0036-8075","issn-type":"print"},{"issue":"2","key":"12_6181402","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1038\/2524","volume":"20","author":"Pinkel","year":"1998","journal-title":"Nature genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1061-4036","issn-type":"print"},{"issue":"2","key":"13_18028502","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1101\/gr.2012304","volume":"14","author":"Bignell","year":"2004","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"1","key":"14_32755797","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1038\/nmeth.1276","volume":"6","author":"Chiang","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"},{"key":"15_47524871","first-page":"S16","volume":"13","year":"2012","journal-title":"BMC genomics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2164","issn-type":"print"},{"key":"16_46545445","doi-asserted-by":"crossref","first-page":"e59128","DOI":"10.1371\/journal.pone.0059128","volume":"8","year":"2013","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"46","key":"17_41137065","doi-asserted-by":"publisher","first-page":"E1128","DOI":"10.1073\/pnas.1110574108","volume":"108","year":"2011","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"10","key":"18_42686833","doi-asserted-by":"publisher","first-page":"1995","DOI":"10.1101\/gr.137570.112","volume":"22","year":"2012","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"issue":"1","key":"19_41105323","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1093\/bioinformatics\/btr593","volume":"28","year":"2012","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"10","key":"20_44079691","doi-asserted-by":"publisher","first-page":"e47812","DOI":"10.1371\/journal.pone.0047812","volume":"7","author":"Krishnan","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"24","key":"21_38353339","doi-asserted-by":"publisher","first-page":"3051","DOI":"10.1093\/bioinformatics\/btq587","volume":"26","year":"2010","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"19","key":"22_40525794","doi-asserted-by":"publisher","first-page":"2648","DOI":"10.1093\/bioinformatics\/btr462","volume":"27","year":"2011","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"23_41648719","doi-asserted-by":"publisher","first-page":"568","DOI":"10.1101\/gr.129684.111","volume":"22","year":"2012","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"24_45953554","first-page":"S2","volume":"14","year":"2013","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"25_47524872","doi-asserted-by":"crossref","first-page":"S26","DOI":"10.1186\/1471-2105-14-S2-S26","volume":"14","year":"2013","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"2","key":"26_38624194","doi-asserted-by":"publisher","first-page":"268","DOI":"10.1093\/bioinformatics\/btq635","volume":"27","year":"2011","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"3","key":"27_41376083","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1093\/bioinformatics\/btr670","volume":"28","year":"2012","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"28_37949554","doi-asserted-by":"publisher","first-page":"432","DOI":"10.1186\/1471-2105-11-432","volume":"11","author":"Kim","year":"2010","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"issue":"11","key":"29_41364699","doi-asserted-by":"crossref","first-page":"1019","DOI":"10.1593\/neo.111252","volume":"13","author":"Lonigro","year":"2011","journal-title":"Neoplasia (New York, N.Y.)","ISSN":"https:\/\/id.crossref.org\/issn\/1522-8002","issn-type":"print"},{"issue":"12","key":"30_38872921","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1186\/gm208","volume":"2","author":"Taub","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1756-994X","issn-type":"print"},{"issue":"16","key":"31_31601570","doi-asserted-by":"publisher","first-page":"e105","DOI":"10.1093\/nar\/gkn425","volume":"36","year":"2008","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"4","key":"32_18464798","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1093\/biostatistics\/kxh008","volume":"5","author":"Olshen","year":"2004","journal-title":"Biostatistics","ISSN":"https:\/\/id.crossref.org\/issn\/1465-4644","issn-type":"print"},{"issue":"9","key":"33_38097866","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1186\/gm186","volume":"2","author":"Ovaska","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1756-994X","issn-type":"print"},{"issue":"13","key":"34_45698542","doi-asserted-by":"publisher","first-page":"1679","DOI":"10.1093\/bioinformatics\/btt198","volume":"29","year":"2013","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"16","key":"35_35017673","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","year":"2009","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"5","key":"36_36389760","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1093\/bioinformatics\/btp698","volume":"26","year":"2010","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"6","key":"37_44332093","doi-asserted-by":"publisher","first-page":"R150","DOI":"10.1186\/bcr3362","volume":"14","author":"Marotta","year":"2012","journal-title":"Breast cancer research : BCR","ISSN":"https:\/\/id.crossref.org\/issn\/1465-5411","issn-type":"print"},{"key":"38_24603953","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1111\/j.1469-8137.1912.tb05611.x","volume":"11","year":"1912","journal-title":"New Phytologist","ISSN":"https:\/\/id.crossref.org\/issn\/1469-8137","issn-type":"print"},{"issue":"7418","key":"39_43727321","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1038\/nature11412","volume":"490","author":"Koboldt","year":"2012","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"issue":"4","key":"40_42054379","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"Langmead","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1548-7091","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/16\/2\/242\/680381\/bbu004.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,8,22]],"date-time":"2017-08-22T16:54:46Z","timestamp":1503420886000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbu004"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,3,5]]},"references-count":40,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2015,3,18]]},"published-print":{"date-parts":[[2015,3,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbu004","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,3,5]]}}}