{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,6]],"date-time":"2026-02-06T21:51:48Z","timestamp":1770414708503,"version":"3.49.0"},"reference-count":56,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Briefings in Bioinformatics"],"published-print":{"date-parts":[[2015,11,1]]},"DOI":"10.1093\/bib\/bbv015","type":"journal-article","created":{"date-parts":[[2015,3,29]],"date-time":"2015-03-29T03:44:40Z","timestamp":1427600680000},"page":"987-999","source":"Crossref","is-referenced-by-count":12,"title":["Parameter estimation methods for gene circuit modeling from time-series mRNA data: a comparative study"],"prefix":"10.1093","volume":"16","author":[{"given":"M.","family":"Fan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"H.","family":"Kuwahara","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"X.","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"X.","family":"Gao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,3,26]]},"reference":[{"key":"1_37659458","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1146\/annurev.anchem.1.031207.113113","volume":"1","author":"Hood","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1936-1335","issn-type":"print"},{"issue":"9825","key":"2_42422454","doi-asserted-by":"publisher","first-page":"1544","DOI":"10.1016\/S0140-6736(12)60476-0","volume":"379","author":"O'Shea","year":"2012","journal-title":"Lancet","ISSN":"https:\/\/id.crossref.org\/issn\/0140-6736","issn-type":"print"},{"issue":"3","key":"3_28302461","doi-asserted-by":"publisher","first-page":"1559","DOI":"10.1038\/nprot.2006.236","volume":"1","author":"Nolan","year":"2006","ISSN":"https:\/\/id.crossref.org\/issn\/1750-2799","issn-type":"print"},{"key":"4_30226739","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1146\/annurev.biochem.77.070606.101543","volume":"77","author":"Imlay","year":"2008","journal-title":"Annual review of biochemistry","ISSN":"https:\/\/id.crossref.org\/issn\/0066-4154","issn-type":"print"},{"key":"5_34773132","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1146\/annurev.biophys.37.032807.125928","volume":"38","author":"Raj","year":"2009","ISSN":"https:\/\/id.crossref.org\/issn\/1936-122X","issn-type":"print"},{"issue":"1","key":"6_32672279","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1038\/nrg2484","volume":"10","author":"Wang","year":"2009","journal-title":"Nature reviews. Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1471-0056","issn-type":"print"},{"issue":"1-2","key":"7_36623032","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1016\/j.jim.2010.01.004","volume":"354","author":"Dhanasekaran","year":"2010","journal-title":"Journal of immunological methods","ISSN":"https:\/\/id.crossref.org\/issn\/0022-1759","issn-type":"print"},{"issue":"4-5","key":"8_37135118","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1016\/j.gep.2010.04.002","volume":"10","author":"Materna","year":"2010","journal-title":"Brain research. Gene expression patterns","ISSN":"https:\/\/id.crossref.org\/issn\/1567-133X","issn-type":"print"},{"issue":"1","key":"9_11393701","doi-asserted-by":"publisher","first-page":"343","DOI":"10.1146\/annurev.genom.2.1.343","volume":"2","author":"Ideker","year":"2001","journal-title":"Annual review of genomics and human genetics","ISSN":"https:\/\/id.crossref.org\/issn\/1527-8204","issn-type":"print"},{"issue":"6912","key":"10_17330085","doi-asserted-by":"publisher","first-page":"206","DOI":"10.1038\/nature01254","volume":"420","author":"Kitano","year":"2002","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"key":"13_50080999","first-page":"839","volume":"9","year":"1999","ISSN":"https:\/\/id.crossref.org\/issn\/0957-0233","issn-type":"print"},{"issue":"10","key":"14_6305444","doi-asserted-by":"publisher","first-page":"869","DOI":"10.1093\/bioinformatics\/14.10.869","volume":"14","author":"Mendes","year":"1998","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"11","key":"15_17888397","doi-asserted-by":"publisher","first-page":"2467","DOI":"10.1101\/gr.1262503","volume":"13","year":"2003","journal-title":"Genome Research","ISSN":"https:\/\/id.crossref.org\/issn\/1088-9051","issn-type":"print"},{"key":"16_50081000","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1109\/TCBB.2011.63","volume":"9","year":"2012","ISSN":"https:\/\/id.crossref.org\/issn\/1545-5963","issn-type":"print"},{"key":"17_24808223","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1109\/4235.873238","volume":"4","year":"2000","journal-title":"IEEE TRANS EVOL COMPUT"},{"key":"18_50081001","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1023\/A:1008202821328","volume":"11","year":"1997","journal-title":"J GLOBAL OPTIM"},{"key":"19_22940970","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1186\/1471-2105-7-483","volume":"7","author":"Rodriguez-Fernandez","year":"2006","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"},{"key":"21_50081002","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1111\/j.1540-5915.1977.tb01074.x","volume":"8","year":"1977","journal-title":"DECIS SCI"},{"key":"24_32035255","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1186\/1752-0509-2-83","volume":"2","author":"Ashyraliyev","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1752-0509","issn-type":"print"},{"issue":"14","key":"26_22404463","doi-asserted-by":"publisher","first-page":"e271","DOI":"10.1093\/bioinformatics\/btl264","volume":"22","author":"Koh","year":"2006","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"key":"27_39054771","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/1752-0509-5-14","volume":"5","author":"Zhan","year":"2011","ISSN":"https:\/\/id.crossref.org\/issn\/1752-0509","issn-type":"print"},{"issue":"14","key":"28_39879357","doi-asserted-by":"publisher","first-page":"1964","DOI":"10.1093\/bioinformatics\/btr293","volume":"27","year":"2011","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"13","key":"29_46028221","doi-asserted-by":"publisher","first-page":"i98","DOI":"10.1093\/bioinformatics\/btt232","volume":"29","year":"2013","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"11","key":"30_42448053","doi-asserted-by":"publisher","first-page":"1501","DOI":"10.1093\/bioinformatics\/bts161","volume":"28","year":"2012","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"11","key":"31_32677102","doi-asserted-by":"publisher","first-page":"e3758","DOI":"10.1371\/journal.pone.0003758","volume":"3","author":"Sun","year":"2008","ISSN":"https:\/\/id.crossref.org\/issn\/1932-6203","issn-type":"print"},{"issue":"3","key":"32_36797220","doi-asserted-by":"publisher","first-page":"e1000696","DOI":"10.1371\/journal.pcbi.1000696","volume":"6","author":"Lillacci","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"key":"34_50081003","doi-asserted-by":"crossref","first-page":"1631","DOI":"10.1109\/TAC.2007.904453","volume":"52","year":"2007","journal-title":"IEEE TRANS AUTOMAT CONTR"},{"key":"35_50081004","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1198\/tech.2003.s23","volume":"45","year":"2003","journal-title":"Technometrics","ISSN":"https:\/\/id.crossref.org\/issn\/0040-1706","issn-type":"print"},{"key":"36_32510048","first-page":"46","volume":"17","year":"2006","journal-title":"GENOME INFORM"},{"key":"37_32510050","first-page":"226","volume":"17","year":"2006","journal-title":"GENOME INFORM"},{"issue":"2","key":"38_13467258","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1016\/0022-2836(85)90086-5","volume":"181","author":"Shea","year":"1985","journal-title":"Journal of molecular biology","ISSN":"https:\/\/id.crossref.org\/issn\/0022-2836","issn-type":"print"},{"issue":"91","key":"39_46995911","doi-asserted-by":"publisher","first-page":"20130505","DOI":"10.1098\/rsif.2013.0505","volume":"11","year":"2014","journal-title":"Journal of The Royal Society Interface","ISSN":"https:\/\/id.crossref.org\/issn\/1742-5689","issn-type":"print"},{"issue":"1","key":"41_38487259","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.copbio.2010.10.002","volume":"22","author":"van Oijen","year":"2011","journal-title":"Current Opinion in Biotechnology","ISSN":"https:\/\/id.crossref.org\/issn\/1879-0429","issn-type":"print"},{"key":"44_50081005","doi-asserted-by":"crossref","first-page":"1942","DOI":"10.1109\/ICNN.1995.488968","volume":"4","year":"1995","journal-title":"NEURAL NETWORKS PROCEEDINGS IEEE INTERNATIONAL CONFERENCE ON IEEE PERTH AUSTRALIA"},{"issue":"8","key":"47_45254091","doi-asserted-by":"publisher","first-page":"1052","DOI":"10.1093\/bioinformatics\/btt097","volume":"29","year":"2013","journal-title":"Bioinformatics","ISSN":"https:\/\/id.crossref.org\/issn\/1367-4803","issn-type":"print"},{"issue":"1","key":"48_11136250","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1093\/genetics\/158.1.41","volume":"158","author":"Courcelle","year":"2001","journal-title":"Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/0016-6731","issn-type":"print"},{"key":"49_24890461","first-page":"355","volume":"5","year":"1975","journal-title":"Basic life sciences","ISSN":"https:\/\/id.crossref.org\/issn\/0090-5542","issn-type":"print"},{"issue":"7","key":"50_19249977","doi-asserted-by":"publisher","first-page":"e255","DOI":"10.1371\/journal.pbio.0030255","volume":"3","author":"Michel","year":"2005","journal-title":"PLoS biology","ISSN":"https:\/\/id.crossref.org\/issn\/1544-9173","issn-type":"print"},{"issue":"7","key":"51_8500419","doi-asserted-by":"publisher","first-page":"4204","DOI":"10.1073\/pnas.78.7.4204","volume":"78","author":"Brent","year":"1981","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"issue":"1","key":"52_10624467","doi-asserted-by":"publisher","first-page":"479","DOI":"10.1146\/annurev.genet.34.1.479","volume":"34","author":"Sutton","year":"2000","journal-title":"Annual review of genetics","ISSN":"https:\/\/id.crossref.org\/issn\/0066-4197","issn-type":"print"},{"issue":"6","key":"53_6548686","doi-asserted-by":"publisher","first-page":"1560","DOI":"10.1046\/j.1365-2958.2000.01826.x","volume":"35","author":"Fern\u00a0\u00a0ndez De Henestrosa","year":"2000","journal-title":"Molecular microbiology","ISSN":"https:\/\/id.crossref.org\/issn\/0950-382X","issn-type":"print"},{"issue":"7308","key":"54_37910571","doi-asserted-by":"publisher","first-page":"883","DOI":"10.1038\/nature09200","volume":"466","author":"Zhang","year":"2010","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"issue":"4","key":"55_8636299","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1073\/pnas.79.4.1129","volume":"79","author":"Ackers","year":"1982","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"key":"56_50081006","first-page":"S5","volume":"8","year":"2014","ISSN":"https:\/\/id.crossref.org\/issn\/1752-0509","issn-type":"print"},{"issue":"1","key":"57_6060237","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1146\/annurev.biophys.27.1.199","volume":"27","author":"McAdams","year":"1998","journal-title":"Annual review of biophysics and biomolecular structure","ISSN":"https:\/\/id.crossref.org\/issn\/1056-8700","issn-type":"print"},{"issue":"4","key":"58_6103920","doi-asserted-by":"crossref","first-page":"1633","DOI":"10.1093\/genetics\/149.4.1633","volume":"149","author":"Arkin","year":"1998","journal-title":"Genetics","ISSN":"https:\/\/id.crossref.org\/issn\/0016-6731","issn-type":"print"},{"issue":"3","key":"59_37033932","doi-asserted-by":"publisher","first-page":"e1000723","DOI":"10.1371\/journal.pcbi.1000723","volume":"6","author":"Kuwahara","year":"2010","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"2","key":"60_18766104","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1016\/j.gde.2005.02.007","volume":"15","author":"Bintu","year":"2005","journal-title":"Current opinion in genetics &amp; development","ISSN":"https:\/\/id.crossref.org\/issn\/0959-437X","issn-type":"print"},{"issue":"9","key":"61_23056427","doi-asserted-by":"publisher","first-page":"e123","DOI":"10.1371\/journal.pcbi.0020123","volume":"2","author":"Chickarmane","year":"2006","ISSN":"https:\/\/id.crossref.org\/issn\/1553-734X","issn-type":"print"},{"issue":"4","key":"62_46988349","doi-asserted-by":"publisher","first-page":"2224","DOI":"10.1093\/nar\/gkt1230","volume":"42","year":"2014","journal-title":"Nucleic Acids Research","ISSN":"https:\/\/id.crossref.org\/issn\/0305-1048","issn-type":"print"},{"issue":"6767","key":"63_6455689","doi-asserted-by":"publisher","first-page":"339","DOI":"10.1038\/35002131","volume":"403","author":"Gardner","year":"2000","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"key":"64_47478135","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1038\/msb.2009.1","volume":"5","year":"2009","journal-title":"Molecular Systems Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1744-4292","issn-type":"print"},{"issue":"2","key":"65_36003147","doi-asserted-by":"publisher","first-page":"174","DOI":"10.1016\/j.jtbi.2009.10.026","volume":"264","author":"Nguyen","year":"2010","journal-title":"Journal of Theoretical Biology","ISSN":"https:\/\/id.crossref.org\/issn\/1095-8541","issn-type":"print"},{"issue":"6959","key":"66_17860173","doi-asserted-by":"publisher","first-page":"737","DOI":"10.1038\/nature02046","volume":"425","author":"Ghaemmaghami","year":"2003","journal-title":"Nature","ISSN":"https:\/\/id.crossref.org\/issn\/0028-0836","issn-type":"print"},{"issue":"35","key":"67_22501400","doi-asserted-by":"publisher","first-page":"13004","DOI":"10.1073\/pnas.0605420103","volume":"103","year":"2006","journal-title":"PNAS","ISSN":"https:\/\/id.crossref.org\/issn\/0027-8424","issn-type":"print"},{"key":"69_22089398","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1186\/1471-2105-7-191","volume":"7","author":"Ernst","year":"2006","journal-title":"BMC bioinformatics [electronic resource]","ISSN":"https:\/\/id.crossref.org\/issn\/1471-2105","issn-type":"print"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/16\/6\/987\/607416\/bbv015.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,3]],"date-time":"2022-05-03T23:57:49Z","timestamp":1651622269000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbv015"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,3,26]]},"references-count":56,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2015,11,19]]},"published-print":{"date-parts":[[2015,11,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bib\/bbv015","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,3,26]]}}}