{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T23:14:11Z","timestamp":1787008451986,"version":"build-2736575974"},"reference-count":151,"publisher":"Oxford University Press (OUP)","issue":"4","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Brief Bioinform"],"published-print":{"date-parts":[[2016,7]]},"DOI":"10.1093\/bib\/bbv068","type":"journal-article","created":{"date-parts":[[2015,8,25]],"date-time":"2015-08-25T20:25:59Z","timestamp":1440534359000},"page":"642-656","source":"Crossref","is-referenced-by-count":132,"title":["Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes"],"prefix":"10.1093","volume":"17","author":[{"given":"Feixiong","family":"Cheng","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junfei","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhongming","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2015,8,24]]},"reference":[{"key":"2016071423575788000_17.4.642.1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt0515-433"},{"key":"2016071423575788000_17.4.642.2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-genom-082509-141532"},{"key":"2016071423575788000_17.4.642.3","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2841"},{"key":"2016071423575788000_17.4.642.4","doi-asserted-by":"publisher","DOI":"10.1038\/nrc3299"},{"key":"2016071423575788000_17.4.642.5","doi-asserted-by":"publisher","DOI":"10.1038\/nm.3667"},{"key":"2016071423575788000_17.4.642.6","doi-asserted-by":"publisher","DOI":"10.1158\/1535-7163.MCT-13-0804"},{"key":"2016071423575788000_17.4.642.7","doi-asserted-by":"publisher","DOI":"10.1101\/gr.152322.112"},{"key":"2016071423575788000_17.4.642.8","doi-asserted-by":"publisher","DOI":"10.1158\/2159-8290.CD-12-0097"},{"key":"2016071423575788000_17.4.642.9","doi-asserted-by":"publisher","DOI":"10.1038\/nm.2323"},{"key":"2016071423575788000_17.4.642.10","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2562"},{"key":"2016071423575788000_17.4.642.11","doi-asserted-by":"publisher","DOI":"10.1038\/nature08987"},{"key":"2016071423575788000_17.4.642.12","doi-asserted-by":"publisher","DOI":"10.1038\/nature12213"},{"key":"2016071423575788000_17.4.642.13","doi-asserted-by":"publisher","DOI":"10.1126\/science.1235122"},{"key":"2016071423575788000_17.4.642.14","doi-asserted-by":"publisher","DOI":"10.1186\/gm524"},{"key":"2016071423575788000_17.4.642.15","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3767"},{"key":"2016071423575788000_17.4.642.16","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1075"},{"key":"2016071423575788000_17.4.642.17","doi-asserted-by":"publisher","DOI":"10.1126\/scisignal.2004088"},{"key":"2016071423575788000_17.4.642.18","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1140"},{"key":"2016071423575788000_17.4.642.19","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3289"},{"key":"2016071423575788000_17.4.642.20","doi-asserted-by":"publisher","DOI":"10.1126\/science.1058040"},{"key":"2016071423575788000_17.4.642.21","doi-asserted-by":"publisher","DOI":"10.1038\/nature11247"},{"key":"2016071423575788000_17.4.642.22","doi-asserted-by":"publisher","DOI":"10.1038\/nature14248"},{"key":"2016071423575788000_17.4.642.23","doi-asserted-by":"publisher","DOI":"10.1038\/nature12787"},{"key":"2016071423575788000_17.4.642.24","doi-asserted-by":"publisher","DOI":"10.1126\/science.1262110"},{"key":"2016071423575788000_17.4.642.25","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2653"},{"key":"2016071423575788000_17.4.642.26","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1074"},{"key":"2016071423575788000_17.4.642.27","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1076"},{"key":"2016071423575788000_17.4.642.28","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1102"},{"key":"2016071423575788000_17.4.642.29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq1039"},{"key":"2016071423575788000_17.4.642.30","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn653"},{"key":"2016071423575788000_17.4.642.31","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1158"},{"key":"2016071423575788000_17.4.642.32","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn892"},{"key":"2016071423575788000_17.4.642.33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr930"},{"key":"2016071423575788000_17.4.642.34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1088"},{"key":"2016071423575788000_17.4.642.35","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1094"},{"key":"2016071423575788000_17.4.642.36","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr967"},{"key":"2016071423575788000_17.4.642.37","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1122"},{"key":"2016071423575788000_17.4.642.38","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-5-79"},{"key":"2016071423575788000_17.4.642.39","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1081"},{"key":"2016071423575788000_17.4.642.40","doi-asserted-by":"publisher","DOI":"10.18632\/oncotarget.1984"},{"key":"2016071423575788000_17.4.642.41","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2289"},{"key":"2016071423575788000_17.4.642.42","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt887"},{"key":"2016071423575788000_17.4.642.43","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt181"},{"key":"2016071423575788000_17.4.642.44","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msu167"},{"key":"2016071423575788000_17.4.642.45","doi-asserted-by":"publisher","DOI":"10.1007\/s00439-013-1377-1"},{"key":"2016071423575788000_17.4.642.46","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3168"},{"key":"2016071423575788000_17.4.642.47","doi-asserted-by":"publisher","DOI":"10.1101\/gr.134635.111"},{"key":"2016071423575788000_17.4.642.48","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt395"},{"key":"2016071423575788000_17.4.642.49","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu466"},{"key":"2016071423575788000_17.4.642.50","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks539"},{"key":"2016071423575788000_17.4.642.51","doi-asserted-by":"publisher","DOI":"10.1038\/nprot.2009.86"},{"key":"2016071423575788000_17.4.642.52","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth0410-248"},{"key":"2016071423575788000_17.4.642.53","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth0810-575"},{"key":"2016071423575788000_17.4.642.54","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr407"},{"key":"2016071423575788000_17.4.642.55","doi-asserted-by":"publisher","DOI":"10.1016\/j.ajhg.2011.03.004"},{"key":"2016071423575788000_17.4.642.56","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr357"},{"key":"2016071423575788000_17.4.642.57","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks743"},{"key":"2016071423575788000_17.4.642.58","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0046688"},{"key":"2016071423575788000_17.4.642.59","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0077945"},{"key":"2016071423575788000_17.4.642.60","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt182"},{"key":"2016071423575788000_17.4.642.61","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt017"},{"key":"2016071423575788000_17.4.642.62","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-190"},{"key":"2016071423575788000_17.4.642.63","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1038\/msb.2012.68","article-title":"Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers","volume":"9","author":"Reimand","year":"2013","journal-title":"Mol Syst Biol"},{"key":"2016071423575788000_17.4.642.64","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt1305"},{"key":"2016071423575788000_17.4.642.65","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0489-9"},{"key":"2016071423575788000_17.4.642.66","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu499"},{"key":"2016071423575788000_17.4.642.67","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-014-0081-7"},{"key":"2016071423575788000_17.4.642.68","doi-asserted-by":"publisher","DOI":"10.1074\/mcp.M115.053199"},{"key":"2016071423575788000_17.4.642.69","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq182"},{"key":"2016071423575788000_17.4.642.70","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts402"},{"key":"2016071423575788000_17.4.642.71","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0037595"},{"key":"2016071423575788000_17.4.642.72","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2012-13-12-r124"},{"key":"2016071423575788000_17.4.642.73","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt471"},{"key":"2016071423575788000_17.4.642.74","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2651"},{"key":"2016071423575788000_17.4.642.75","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-014-0056-8"},{"key":"2016071423575788000_17.4.642.76","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003460"},{"key":"2016071423575788000_17.4.642.77","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2010.11.013"},{"key":"2016071423575788000_17.4.642.78","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1001114"},{"key":"2016071423575788000_17.4.642.79","doi-asserted-by":"crossref","first-page":"3538","DOI":"10.1038\/srep03538","article-title":"Identifying potential cancer driver genes by genomic data integration","volume":"3","author":"Chen","year":"2013","journal-title":"Sci Rep"},{"key":"2016071423575788000_17.4.642.80","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.10.048"},{"key":"2016071423575788000_17.4.642.81","doi-asserted-by":"publisher","DOI":"10.1186\/gm563"},{"key":"2016071423575788000_17.4.642.82","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu467"},{"key":"2016071423575788000_17.4.642.83","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1393"},{"key":"2016071423575788000_17.4.642.84","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.01.051"},{"key":"2016071423575788000_17.4.642.85","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3247"},{"key":"2016071423575788000_17.4.642.86","doi-asserted-by":"publisher","DOI":"10.1126\/scitranslmed.aaa7161"},{"key":"2016071423575788000_17.4.642.87","doi-asserted-by":"publisher","DOI":"10.1038\/nature07485"},{"key":"2016071423575788000_17.4.642.88","doi-asserted-by":"publisher","DOI":"10.1038\/nature09534"},{"key":"2016071423575788000_17.4.642.89","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0484-1"},{"key":"2016071423575788000_17.4.642.90","doi-asserted-by":"publisher","DOI":"10.1158\/0008-5472.CAN-09-1133"},{"key":"2016071423575788000_17.4.642.91","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.235"},{"key":"2016071423575788000_17.4.642.92","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004147"},{"key":"2016071423575788000_17.4.642.93","doi-asserted-by":"publisher","DOI":"10.1093\/jmcb\/mjv013"},{"key":"2016071423575788000_17.4.642.94","doi-asserted-by":"crossref","first-page":"2651","DOI":"10.1038\/srep02651","article-title":"The mutational landscape of phosphorylation signaling in cancer","volume":"3","author":"Reimand","year":"2013","journal-title":"Sci Rep"},{"key":"2016071423575788000_17.4.642.95","doi-asserted-by":"publisher","DOI":"10.1158\/2159-8290.CD-13-0219"},{"key":"2016071423575788000_17.4.642.96","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2011.06.046"},{"key":"2016071423575788000_17.4.642.97","doi-asserted-by":"publisher","DOI":"10.1186\/1476-4598-10-54"},{"key":"2016071423575788000_17.4.642.98","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbs044"},{"key":"2016071423575788000_17.4.642.99","doi-asserted-by":"publisher","DOI":"10.1038\/msb.2009.80"},{"key":"2016071423575788000_17.4.642.100","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2011.03.001"},{"key":"2016071423575788000_17.4.642.101","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.10.050"},{"key":"2016071423575788000_17.4.642.102","doi-asserted-by":"publisher","DOI":"10.1016\/j.semcdb.2009.07.003"},{"key":"2016071423575788000_17.4.642.103","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.04.013"},{"key":"2016071423575788000_17.4.642.104","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2010.0265"},{"key":"2016071423575788000_17.4.642.105","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0708078105"},{"key":"2016071423575788000_17.4.642.106","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2006-7-11-120"},{"key":"2016071423575788000_17.4.642.107","doi-asserted-by":"publisher","DOI":"10.1126\/science.1257601"},{"key":"2016071423575788000_17.4.642.108","doi-asserted-by":"publisher","DOI":"10.1111\/jcmm.12507"},{"key":"2016071423575788000_17.4.642.109","first-page":"1","article-title":"Cancer panomics: Computational methods and infrastructure for integrative analysis of cancer high-throughput \u201comics\u201d data-session introduction","volume":"19","author":"Brunak","year":"2014","journal-title":"Pac Sym Biocomput"},{"key":"2016071423575788000_17.4.642.110","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-med-100708-204735"},{"key":"2016071423575788000_17.4.642.111","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-12-r128"},{"key":"2016071423575788000_17.4.642.112","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbu004"},{"key":"2016071423575788000_17.4.642.113","doi-asserted-by":"crossref","first-page":"2650","DOI":"10.1038\/srep02650","article-title":"Comprehensive identification of mutational cancer driver genes across 12 tumor types","volume":"3","author":"Tamborero","year":"2013","journal-title":"Sci Rep"},{"key":"2016071423575788000_17.4.642.114","doi-asserted-by":"publisher","DOI":"10.1038\/nm.3915"},{"key":"2016071423575788000_17.4.642.115","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbu002"},{"key":"2016071423575788000_17.4.642.116","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3224"},{"key":"2016071423575788000_17.4.642.117","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3225"},{"key":"2016071423575788000_17.4.642.118","doi-asserted-by":"crossref","first-page":"2612","DOI":"10.1038\/ncomms3612","article-title":"Inferring tumour purity and stromal and immune cell admixture from expression data","volume":"4","author":"Yoshihara","year":"2013","journal-title":"Nat Commun"},{"key":"2016071423575788000_17.4.642.119","doi-asserted-by":"publisher","DOI":"10.1038\/nature12912"},{"key":"2016071423575788000_17.4.642.120","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.08.029"},{"key":"2016071423575788000_17.4.642.121","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1421839112"},{"key":"2016071423575788000_17.4.642.122","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2514"},{"key":"2016071423575788000_17.4.642.123","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1418631112"},{"key":"2016071423575788000_17.4.642.124","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMp1500523"},{"key":"2016071423575788000_17.4.642.125","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-189"},{"key":"2016071423575788000_17.4.642.126","doi-asserted-by":"publisher","DOI":"10.1101\/gr.107524.110"},{"key":"2016071423575788000_17.4.642.127","doi-asserted-by":"publisher","DOI":"10.1186\/gm432"},{"key":"2016071423575788000_17.4.642.128","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2015.04.016"},{"key":"2016071423575788000_17.4.642.129","doi-asserted-by":"publisher","DOI":"10.1186\/gm495"},{"key":"2016071423575788000_17.4.642.130","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3407"},{"key":"2016071423575788000_17.4.642.131","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2764"},{"key":"2016071423575788000_17.4.642.132","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.06.049"},{"key":"2016071423575788000_17.4.642.133","doi-asserted-by":"publisher","DOI":"10.1038\/517128a"},{"key":"2016071423575788000_17.4.642.134","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3141"},{"key":"2016071423575788000_17.4.642.135","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3101"},{"key":"2016071423575788000_17.4.642.136","doi-asserted-by":"publisher","DOI":"10.1126\/science.1248627"},{"key":"2016071423575788000_17.4.642.137","doi-asserted-by":"publisher","DOI":"10.1038\/nature14136"},{"key":"2016071423575788000_17.4.642.138","doi-asserted-by":"publisher","DOI":"10.1038\/nm.3519"},{"key":"2016071423575788000_17.4.642.139","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa1213261"},{"key":"2016071423575788000_17.4.642.140","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2892"},{"key":"2016071423575788000_17.4.642.141","doi-asserted-by":"crossref","first-page":"162ra54","DOI":"10.1126\/scitranslmed.3004742","article-title":"Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing","volume":"4","author":"Leary","year":"2012","journal-title":"Sci Transl Med"},{"key":"2016071423575788000_17.4.642.142","doi-asserted-by":"publisher","DOI":"10.1038\/nature09807"},{"key":"2016071423575788000_17.4.642.143","doi-asserted-by":"publisher","DOI":"10.1126\/science.1239999"},{"key":"2016071423575788000_17.4.642.144","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.05.044"},{"key":"2016071423575788000_17.4.642.145","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3542"},{"key":"2016071423575788000_17.4.642.146","doi-asserted-by":"publisher","DOI":"10.1038\/nature13988"},{"key":"2016071423575788000_17.4.642.147","doi-asserted-by":"publisher","DOI":"10.1038\/emboj.2012.333"},{"key":"2016071423575788000_17.4.642.148","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa1113205"},{"key":"2016071423575788000_17.4.642.149","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.12.033"},{"key":"2016071423575788000_17.4.642.150","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa1406498"},{"key":"2016071423575788000_17.4.642.151","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaa1348"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bib\/article-pdf\/17\/4\/642\/6685954\/bbv068.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,29]],"date-time":"2019-08-29T16:51:12Z","timestamp":1567097472000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbv068"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,8,24]]},"references-count":151,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2016,7,14]]},"published-print":{"date-parts":[[2016,7]]}},"alternative-id":["10.1093\/bib\/bbv068"],"URL":"https:\/\/doi.org\/10.1093\/bib\/bbv068","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,8,24]]}}}