{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T01:45:43Z","timestamp":1790646343686,"version":"4.1.0"},"reference-count":64,"publisher":"Oxford University Press (OUP)","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Brief Bioinform"],"DOI":"10.1093\/bib\/bbw119","type":"journal-article","created":{"date-parts":[[2016,11,3]],"date-time":"2016-11-03T20:06:46Z","timestamp":1478203606000},"page":"bbw119","source":"Crossref","is-referenced-by-count":54,"title":["Measuring the diversity of the human microbiota with targeted next-generation sequencing"],"prefix":"10.1093","author":[{"given":"Francesca","family":"Finotello","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eleonora","family":"Mastrorilli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Barbara","family":"Di Camillo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2016,12,26]]},"reference":[{"key":"2016122617351652000_bbw119v1.1","doi-asserted-by":"publisher","DOI":"10.1038\/nature11234"},{"key":"2016122617351652000_bbw119v1.2","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3182"},{"key":"2016122617351652000_bbw119v1.3","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2015.03.049"},{"key":"2016122617351652000_bbw119v1.4","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1005963107"},{"key":"2016122617351652000_bbw119v1.5","doi-asserted-by":"publisher","DOI":"10.1038\/nature10213"},{"key":"2016122617351652000_bbw119v1.6","doi-asserted-by":"publisher","DOI":"10.1038\/nature11450"},{"key":"2016122617351652000_bbw119v1.7","doi-asserted-by":"crossref","first-page":"154","DOI":"10.1038\/nrendo.2015.218","article-title":"The role of the intestinal microbiota in type 1 diabetes mellitus","volume":"12","author":"Knip","year":"2016","journal-title":"Nat Rev Endocrinol"},{"key":"2016122617351652000_bbw119v1.8","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-016-0307-y"},{"key":"2016122617351652000_bbw119v1.9","doi-asserted-by":"crossref","first-page":"758","DOI":"10.1016\/j.tem.2015.09.011","article-title":"Linking microbiota to human diseases: a systems biology perspective","volume":"26","author":"Wu","year":"2015","journal-title":"Trends Endocrinol Metab TEM"},{"key":"2016122617351652000_bbw119v1.10","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaa4972"},{"key":"2016122617351652000_bbw119v1.11","doi-asserted-by":"publisher","DOI":"10.1038\/nrc3610"},{"key":"2016122617351652000_bbw119v1.12","doi-asserted-by":"publisher","DOI":"10.1101\/gr.096651.109"},{"key":"2016122617351652000_bbw119v1.13","doi-asserted-by":"publisher","DOI":"10.1038\/nature11209"},{"key":"2016122617351652000_bbw119v1.14","doi-asserted-by":"publisher","DOI":"10.1038\/nbt1486"},{"key":"2016122617351652000_bbw119v1.15","doi-asserted-by":"publisher","DOI":"10.1038\/nature11553"},{"key":"2016122617351652000_bbw119v1.16","doi-asserted-by":"crossref","first-page":"e1003594.","DOI":"10.1371\/journal.pcbi.1003594","article-title":"Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale","volume":"10","author":"Schmidt","year":"2014","journal-title":"PLoS Comput Biol"},{"key":"2016122617351652000_bbw119v1.17","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3129"},{"key":"2016122617351652000_bbw119v1.18","doi-asserted-by":"publisher","DOI":"10.2307\/1943563"},{"key":"2016122617351652000_bbw119v1.19","doi-asserted-by":"crossref","unstructured":"Whittaker RH. Evolution and measurement of species diversity. Taxon 1972;213\u201351.","DOI":"10.2307\/1218190"},{"key":"2016122617351652000_bbw119v1.20","doi-asserted-by":"publisher","DOI":"10.1111\/j.1600-0587.2009.05880.x"},{"key":"2016122617351652000_bbw119v1.21","doi-asserted-by":"publisher","DOI":"10.1890\/06-1736.1"},{"key":"2016122617351652000_bbw119v1.22","doi-asserted-by":"publisher","DOI":"10.3390\/d2020207"},{"key":"2016122617351652000_bbw119v1.23","doi-asserted-by":"crossref","unstructured":"Chao A. Estimating the population size for capture-recapture data with unequal catchability. Biometrics 1987;783\u201391.","DOI":"10.2307\/2531532"},{"key":"2016122617351652000_bbw119v1.24","doi-asserted-by":"crossref","unstructured":"Smith EP van Belle G. Nonparametric estimation of species richness. Biometrics 1984;119\u201329.","DOI":"10.2307\/2530750"},{"key":"2016122617351652000_bbw119v1.25","doi-asserted-by":"publisher","DOI":"10.2307\/2290471"},{"key":"2016122617351652000_bbw119v1.26","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2656.2005.00940.x"},{"key":"2016122617351652000_bbw119v1.27","doi-asserted-by":"publisher","DOI":"10.2307\/1934352"},{"key":"2016122617351652000_bbw119v1.28","doi-asserted-by":"publisher","DOI":"10.1126\/science.168.3937.1345"},{"key":"2016122617351652000_bbw119v1.29","first-page":"547","article-title":"On measures of entropy and information","volume":"1","author":"R\u00e9nyi","year":"1961","journal-title":"Proc Fourth Berkeley Symp Math Stat Probab"},{"key":"2016122617351652000_bbw119v1.30","doi-asserted-by":"crossref","unstructured":"Simpson EH. Measurement of diversity. Nature 163:688.","DOI":"10.1038\/163688a0"},{"key":"2016122617351652000_bbw119v1.31","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1145\/584091.584093","article-title":"mathematical theory of communication","volume":"5","author":"Shannon","year":"2001","journal-title":"ACM SIGMOBILE Mob Comput Commun Rev"},{"key":"2016122617351652000_bbw119v1.32","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0032118"},{"key":"2016122617351652000_bbw119v1.33","doi-asserted-by":"publisher","DOI":"10.1016\/0022-5193(66)90013-0"},{"key":"2016122617351652000_bbw119v1.34","unstructured":"Oksanen J Blanchet FG Kindt R , . Vegan: Community Ecology Package, 2015. R package version 2.4-1. https:\/\/CRAN.R-project.org\/package=vegan"},{"key":"2016122617351652000_bbw119v1.35","doi-asserted-by":"publisher","DOI":"10.1038\/nature07840"},{"key":"2016122617351652000_bbw119v1.36","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2656.2003.00710.x"},{"key":"2016122617351652000_bbw119v1.37","doi-asserted-by":"crossref","unstructured":"Magurran A. Ecological diversity and its measurement Croom Helm London. 1988;179. p.","DOI":"10.1007\/978-94-015-7358-0"},{"key":"2016122617351652000_bbw119v1.38","unstructured":"Southwood TRE Henderson PA. Ecological methods. 2009."},{"key":"2016122617351652000_bbw119v1.39","doi-asserted-by":"crossref","unstructured":"Harrison S Ross SJ Lawton JH. Beta diversity on geographic gradients in Britain. J Anim Ecol 1992;151\u20138.","DOI":"10.2307\/5518"},{"key":"2016122617351652000_bbw119v1.40","doi-asserted-by":"crossref","unstructured":"Wilson M Shmida A. Measuring beta diversity with presence-absence data. J Ecol 1984;1055\u201364.","DOI":"10.2307\/2259551"},{"key":"2016122617351652000_bbw119v1.41","doi-asserted-by":"crossref","first-page":"547","DOI":"10.2307\/3237206","article-title":"Differentiation diversity of Argentine cacti and its relationship to environmental factors","volume":"8","author":"Mourelle","year":"1997","journal-title":"J Veg Sci"},{"key":"2016122617351652000_bbw119v1.42","first-page":"1","article-title":"A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons","volume":"5","author":"S\u00f8rensen","year":"1948","journal-title":"Biol Skr"},{"key":"2016122617351652000_bbw119v1.43","doi-asserted-by":"crossref","unstructured":"Harte J Kinzig AP. On the implications of species-area relationships for endemism, spatial turnover, and food web patterns. Oikos 1997;417\u201327.","DOI":"10.2307\/3546614"},{"key":"2016122617351652000_bbw119v1.44","doi-asserted-by":"crossref","unstructured":"Lande R. Statistics and partitioning of species diversity, and similarity among multiple communities. Oikos 1996;5\u201313.","DOI":"10.2307\/3545743"},{"key":"2016122617351652000_bbw119v1.45","doi-asserted-by":"crossref","first-page":"1797","DOI":"10.1139\/b94-221","article-title":"Patterns and prediction of \u03b1 and \u03b2 diversity of aquatic plants in Adirondack (New York) lakes","volume":"72","author":"Weiher","year":"1994","journal-title":"Can J Bot"},{"key":"2016122617351652000_bbw119v1.46","first-page":"257.","article-title":"Towards a theory of continental species diversities: bird distributions over Mediterranean habitat gradients","volume":"214","author":"Cody","year":"1975","journal-title":"Ecol Evol Communities"},{"key":"2016122617351652000_bbw119v1.47","doi-asserted-by":"publisher","DOI":"10.1098\/rstb.1994.0091"},{"key":"2016122617351652000_bbw119v1.48","unstructured":"Pielou EC. The interpretation of ecological data: a primer on classification and ordination. 1984;"},{"key":"2016122617351652000_bbw119v1.49","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1046\/j.1461-0248.2001.00196.x","article-title":"Complementary representation and zones of ecological transition","volume":"4","author":"Gaston","year":"2001","journal-title":"Ecol Lett"},{"key":"2016122617351652000_bbw119v1.50","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-8137.1912.tb05611.x"},{"key":"2016122617351652000_bbw119v1.51","unstructured":"Cody ML. Bird diversity components within and between habitats in Australia. Species Divers Ecol Communities 1993; 147\u201358."},{"key":"2016122617351652000_bbw119v1.52","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.1996.0087"},{"key":"2016122617351652000_bbw119v1.53","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2699.1999.00294.x"},{"key":"2016122617351652000_bbw119v1.54","doi-asserted-by":"crossref","unstructured":"Routledge R. On Whittaker\u2019s components of diversity. Ecology 1977;1120\u20137.","DOI":"10.2307\/1936932"},{"key":"2016122617351652000_bbw119v1.55","doi-asserted-by":"publisher","DOI":"10.1046\/j.0021-8790.2001.00563.x"},{"key":"2016122617351652000_bbw119v1.56","doi-asserted-by":"publisher","DOI":"10.1093\/bfgp\/elu035"},{"key":"2016122617351652000_bbw119v1.57","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003531"},{"key":"2016122617351652000_bbw119v1.58","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6941.2007.00375.x"},{"key":"2016122617351652000_bbw119v1.59","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1499"},{"key":"2016122617351652000_bbw119v1.60","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2658"},{"key":"2016122617351652000_bbw119v1.61","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000352"},{"key":"2016122617351652000_bbw119v1.62","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms9081"},{"key":"2016122617351652000_bbw119v1.63","doi-asserted-by":"crossref","first-page":"738","DOI":"10.1016\/j.it.2015.09.006","article-title":"Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires","volume":"36","author":"Greiff","year":"2015","journal-title":"Trends Immunol"},{"key":"2016122617351652000_bbw119v1.64","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp616"}],"container-title":["Briefings in Bioinformatics"],"original-title":[],"language":"en","deposited":{"date-parts":[[2019,9,15]],"date-time":"2019-09-15T07:53:38Z","timestamp":1568534018000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bib\/article-lookup\/doi\/10.1093\/bib\/bbw119"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,12,26]]},"references-count":64,"alternative-id":["10.1093\/bib\/bbw119"],"URL":"https:\/\/doi.org\/10.1093\/bib\/bbw119","relation":{},"ISSN":["1467-5463","1477-4054"],"issn-type":[{"value":"1467-5463","type":"print"},{"value":"1477-4054","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,12,26]]}}}