{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T05:04:32Z","timestamp":1768280672908,"version":"3.49.0"},"reference-count":128,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2018,6,29]],"date-time":"2018-06-29T00:00:00Z","timestamp":1530230400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"the Ocean and Fishery Special Fund Project of Guangdong Province for Technology Extension","award":["2017A0010"],"award-info":[{"award-number":["2017A0010"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,9,27]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Physiological RNA dynamics cause problems in transcriptome analysis. Physiological RNA accumulation affects the analysis of RNA quantification, and physiological RNA degradation affects the analysis of the RNA sequence length, feature site and quantification. In the present article, we review the effects of physiological degradation and accumulation of RNA on analysing RNA sequencing data. Physiological RNA accumulation and degradation probably led to such phenomena as incorrect estimations of transcription quantification, differential expressions, co-expressions, RNA decay rates, alternative splicing, boundaries of transcription, novel genes, new single-nucleotide polymorphisms, small RNAs and gene fusion. Thus, the transcriptomic data obtained up to date warrant further scrutiny. New and improved techniques and bioinformatics software are needed to produce accurate data in transcriptome research.<\/jats:p>","DOI":"10.1093\/bib\/bby045","type":"journal-article","created":{"date-parts":[[2018,6,26]],"date-time":"2018-06-26T11:10:56Z","timestamp":1530011456000},"page":"1725-1733","source":"Crossref","is-referenced-by-count":11,"title":["Physiological RNA dynamics in RNA-Seq analysis"],"prefix":"10.1093","volume":"20","author":[{"given":"Zhongneng","family":"Xu","sequence":"first","affiliation":[{"name":"Department of Ecology, Jinan University, Guangzhou 510632, China"}]},{"given":"Shuichi","family":"Asakawa","sequence":"additional","affiliation":[{"name":"Department of Aquatic Bioscience, Graduate School of Agricultural and Life Science, The University of Tokyo, Tokyo 113-8657, 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