{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,5]],"date-time":"2026-02-05T23:18:47Z","timestamp":1770333527174,"version":"3.49.0"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"22-23","license":[{"start":{"date-parts":[[2020,12,12]],"date-time":"2020-12-12T00:00:00Z","timestamp":1607731200000},"content-version":"vor","delay-in-days":11,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DBI-1832184"],"award-info":[{"award-number":["DBI-1832184"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000015","name":"US Department of Energy","doi-asserted-by":"crossref","award":["DE-SC0019749"],"award-info":[{"award-number":["DE-SC0019749"]}],"id":[{"id":"10.13039\/100000015","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000054","name":"National Cancer Institute","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000054","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01GM133198"],"award-info":[{"award-number":["R01GM133198"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Interoperability between polymer sequences and structural data is essential for providing a complete picture of protein and gene features and helping to understand biomolecular function.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>Herein, we present two resources designed to improve interoperability between the RCSB Protein Data Bank, the NCBI and the UniProtKB data resources and visualize integrated data therefrom. The underlying tools provide a flexible means of mapping between the different coordinate spaces and an interactive tool allows convenient visualization of the 1-dimensional data over the web.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availabilityand implementation<\/jats:title>\n                  <jats:p>https:\/\/1d-coordinates.rcsb.org and https:\/\/rcsb.github.io\/rcsb-saguaro.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa1012","type":"journal-article","created":{"date-parts":[[2020,11,25]],"date-time":"2020-11-25T02:43:35Z","timestamp":1606272215000},"page":"5526-5527","source":"Crossref","is-referenced-by-count":27,"title":["RCSB Protein Data Bank 1D tools and services"],"prefix":"10.1093","volume":"36","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5593-735X","authenticated-orcid":false,"given":"Joan","family":"Segura","sequence":"first","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}]},{"given":"Yana","family":"Rose","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}]},{"given":"John","family":"Westbrook","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"},{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA"},{"name":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"}]},{"given":"Stephen K","family":"Burley","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"},{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey ,\u00a0Piscataway, NJ 08854, USA"},{"name":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"},{"name":"Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"},{"name":"Cancer Institute of New Jersey, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901, USA"}]},{"given":"Jose M","family":"Duarte","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}]}],"member":"286","published-online":{"date-parts":[[2020,12,27]]},"reference":[{"key":"2023062707202410500_btaa1012-B1","doi-asserted-by":"crossref","first-page":"D464","DOI":"10.1093\/nar\/gky1004","article-title":"RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy","volume":"47","author":"Burley","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"2023062707202410500_btaa1012-B2","doi-asserted-by":"crossref","first-page":"D482","DOI":"10.1093\/nar\/gky1114","article-title":"SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins","volume":"47","author":"Dana","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"2023062707202410500_btaa1012-B3","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1186\/s13104-015-1009-z","article-title":"Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences","volume":"8","author":"Jaschob","year":"2015","journal-title":"BMC Res. 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