{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T19:40:16Z","timestamp":1761766816732,"version":"3.37.3"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2020,12,26]],"date-time":"2020-12-26T00:00:00Z","timestamp":1608940800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"ERACoSysMed Call 1 project"},{"DOI":"10.13039\/501100000921","name":"COST","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000921","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Gene Regulation Ensemble Effort for the Knowledge Commons","award":["CA15205"],"award-info":[{"award-number":["CA15205"]}]},{"DOI":"10.13039\/100009123","name":"Norwegian University of Science and Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100009123","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NTNU Health"},{"DOI":"10.13039\/501100005416","name":"Research Council of Norway","doi-asserted-by":"publisher","award":["247727\/O70"],"award-info":[{"award-number":["247727\/O70"]}],"id":[{"id":"10.13039\/501100005416","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,4,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>We present a set of software packages that provide uniform access to diverse biological vocabulary resources that are instrumental for current biocuration efforts and tools. The Unified Biological Dictionaries (UniBioDicts or UBDs) provide a single query-interface for accessing the online API services of leading biological data providers. Given a search string, UBDs return a list of matching term, identifier and metadata units from databases (e.g. UniProt), controlled vocabularies (e.g. PSI-MI) and ontologies (e.g. GO, via BioPortal). This functionality can be connected to input fields (user-interface components) that offer autocomplete lookup for these dictionaries. UBDs create a unified gateway for accessing life science concepts, helping curators find annotation terms across resources (based on descriptive metadata and unambiguous identifiers), and helping data users search and retrieve the right query terms.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The UBDs are available through npm and the code is available in the GitHub organisation UniBioDicts (https:\/\/github.com\/UniBioDicts) under the Affero GPL license.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa1065","type":"journal-article","created":{"date-parts":[[2020,12,12]],"date-time":"2020-12-12T06:26:35Z","timestamp":1607754395000},"page":"143-144","source":"Crossref","is-referenced-by-count":2,"title":["UniBioDicts: Unified access to Biological Dictionaries"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3609-8674","authenticated-orcid":false,"given":"John","family":"Zobolas","sequence":"first","affiliation":[{"name":"Department of Biology, Norwegian University of Science and Technology (NTNU ), NO-7491 Trondheim, Norway"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4639-4431","authenticated-orcid":false,"given":"Vasundra","family":"Tour\u00e9","sequence":"additional","affiliation":[{"name":"Department of Biology, Norwegian University of Science and Technology (NTNU ), NO-7491 Trondheim, Norway"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1171-9876","authenticated-orcid":false,"given":"Martin","family":"Kuiper","sequence":"additional","affiliation":[{"name":"Department of Biology, Norwegian University of Science and Technology (NTNU ), NO-7491 Trondheim, Norway"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3136-7353","authenticated-orcid":false,"given":"Steven","family":"Vercruysse","sequence":"additional","affiliation":[{"name":"Department of Biology, Norwegian University of Science and Technology (NTNU ), NO-7491 Trondheim, Norway"}]}],"member":"286","published-online":{"date-parts":[[2021,1,4]]},"reference":[{"key":"2023051510465599900_btaa1065-B1","doi-asserted-by":"crossref","first-page":"D689","DOI":"10.1093\/nar\/gkz890","article-title":"Ensembl Genomes 2020-enabling non-vertebrate genomic research","volume":"48","author":"Howe","year":"2020","journal-title":"Nucleic Acids Res"},{"key":"2023051510465599900_btaa1065-B2","doi-asserted-by":"crossref","first-page":"W636","DOI":"10.1093\/nar\/gkz268","article-title":"The EMBL-EBI search and sequence analysis tools APIs in 2019","volume":"47","author":"Madeira","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"2023051510465599900_btaa1065-B3","doi-asserted-by":"crossref","first-page":"e2001414","DOI":"10.1371\/journal.pbio.2001414","article-title":"Identifiers for the 21st century: how to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data","volume":"15","author":"McMurry","year":"2017","journal-title":"PLoS Biol"},{"key":"2023051510465599900_btaa1065-B4","doi-asserted-by":"crossref","first-page":"D550","DOI":"10.1093\/nar\/gky1001","article-title":"Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes","volume":"47","author":"Meldal","year":"2019","journal-title":"Nucleic Acids Res"},{"year":"2010","author":"Sayers","key":"2023051510465599900_btaa1065-B5"},{"key":"2023051510465599900_btaa1065-B6","first-page":"D1250","article-title":"RNAcentral: a hub of information for non-coding RNA sequences","volume":"47","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"2023051510465599900_btaa1065-B7","doi-asserted-by":"crossref","first-page":"D506","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: a worldwide hub of protein knowledge","volume":"47","year":"2019","journal-title":"Nucleic Acids Res"},{"year":"2020","author":"Tour\u00e9","key":"2023051510465599900_btaa1065-B8"},{"year":"2020","author":"Vercruysse","key":"2023051510465599900_btaa1065-B9"},{"year":"2020","author":"Vercruysse","key":"2023051510465599900_btaa1065-B10"},{"key":"2023051510465599900_btaa1065-B11","doi-asserted-by":"crossref","first-page":"6","DOI":"10.6017\/ital.v31i4.1930","article-title":"Autocomplete as a research tool: a study on providing search suggestions","volume":"31","author":"Ward","year":"2012","journal-title":"Inf. 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