{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,13]],"date-time":"2026-07-13T20:52:54Z","timestamp":1783975974288,"version":"3.55.0"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"11","license":[{"start":{"date-parts":[[2020,3,14]],"date-time":"2020-03-14T00:00:00Z","timestamp":1584144000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["P41GM103694"],"award-info":[{"award-number":["P41GM103694"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01GM125267"],"award-info":[{"award-number":["U01GM125267"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Glycan structures are commonly represented using symbols or linear nomenclature such as that from the Consortium for Functional Glycomics (also known as modified IUPAC-condensed nomenclature). No current tool allows for writing the name in such format using a graphical user interface (GUI); thus, names are prone to errors or non-standardized representations.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>Here we present GlycoGlyph, a web application built using JavaScript, which is capable of drawing glycan structures using a GUI and providing the linear nomenclature as an output or using it as an input in a dynamic manner. GlycoGlyph also allows users to save the structures as an SVG vector graphic, and allows users to export the structure as condensed GlycoCT.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>The application can be used at: https:\/\/glycotoolkit.com\/Tools\/GlycoGlyph\/. The application is tested to work in modern web browsers such as Firefox or Chrome.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Contact<\/jats:title>\n                  <jats:p>aymehta@bidmc.harvard.edu or rcummin1@bidmc.harvard.edu<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa190","type":"journal-article","created":{"date-parts":[[2020,3,12]],"date-time":"2020-03-12T20:32:29Z","timestamp":1584045149000},"page":"3613-3614","source":"Crossref","is-referenced-by-count":60,"title":["GlycoGlyph: a glycan visualizing, drawing and naming application"],"prefix":"10.1093","volume":"36","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3450-3461","authenticated-orcid":false,"given":"Akul Y","family":"Mehta","sequence":"first","affiliation":[{"name":"Department of Surgery , National Center for Functional Glycomics, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8918-5034","authenticated-orcid":false,"given":"Richard D","family":"Cummings","sequence":"additional","affiliation":[{"name":"Department of Surgery , National Center for Functional Glycomics, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2020,3,14]]},"reference":[{"key":"2023062312021725300_btaa190-B1","doi-asserted-by":"crossref","first-page":"3417","DOI":"10.1093\/bioinformatics\/btu559","article-title":"GlycoPattern: a web platform for glycan array mining","volume":"30","author":"Agravat","year":"2014","journal-title":"Bioinformatics"},{"key":"2023062312021725300_btaa190-B2","doi-asserted-by":"crossref","first-page":"3206","DOI":"10.3390\/molecules23123206","article-title":"SugarSketcher: quick and intuitive online glycan drawing","volume":"23","author":"Alocci","year":"2018","journal-title":"Molecules"},{"key":"2023062312021725300_btaa190-B3","first-page":"200","article-title":"DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information","volume":"27","author":"Cheng","year":"2017","journal-title":"Glycobiology"},{"key":"2023062312021725300_btaa190-B4","doi-asserted-by":"crossref","first-page":"2162","DOI":"10.1016\/j.carres.2008.03.011","article-title":"GlycoCT-a unifying sequence format for carbohydrates","volume":"343","author":"Herget","year":"2008","journal-title":"Carbohydr. Res"},{"key":"2023062312021725300_btaa190-B5","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1021\/acs.jcim.6b00650","article-title":"WURCS 2.0 update to encapsulate ambiguous carbohydrate structures","volume":"57","author":"Matsubara","year":"2017","journal-title":"J. Chem. Inf. Model"},{"key":"2023062312021725300_btaa190-B6","first-page":"43","article-title":"Nomenclature of carbohydrates (recommendations 1996)","volume":"52","author":"McNaught","year":"1997","journal-title":"Adv. Carbohydr. Chem. Biochem"},{"key":"2023062312021725300_btaa190-B7","doi-asserted-by":"crossref","first-page":"82R","DOI":"10.1093\/glycob\/cwj080","article-title":"Advancing glycomics: implementation strategies at the consortium for functional glycomics","volume":"16","author":"Raman","year":"2006","journal-title":"Glycobiology"},{"key":"2023062312021725300_btaa190-B8","first-page":"19","volume-title":"Essentials of Glycobiology.","author":"Seeberger","year":"2015"},{"key":"2023062312021725300_btaa190-B9","doi-asserted-by":"crossref","first-page":"1323","DOI":"10.1093\/glycob\/cwv091","article-title":"Symbol nomenclature for graphical representations of glycans","volume":"25","author":"Varki","year":"2015","journal-title":"Glycobiology"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bioinformatics\/advance-article-pdf\/doi\/10.1093\/bioinformatics\/btaa190\/33032035\/btaa190.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/36\/11\/3613\/50670687\/bioinformatics_36_11_3613.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/36\/11\/3613\/50670687\/bioinformatics_36_11_3613.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,23]],"date-time":"2023-06-23T12:03:55Z","timestamp":1687521835000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/36\/11\/3613\/5805386"}},"subtitle":[],"editor":[{"given":"Jonathan","family":"Wren","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2020,3,14]]},"references-count":9,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2020,6,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btaa190","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2020,6]]},"published":{"date-parts":[[2020,3,14]]}}}