{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,28]],"date-time":"2026-01-28T13:53:01Z","timestamp":1769608381491,"version":"3.49.0"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2020,5,16]],"date-time":"2020-05-16T00:00:00Z","timestamp":1589587200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"Fonds pour la Formation \u00e0 la Recherche dans l\u2019Industrie et l\u2019Agriculture"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>To support small and large-scale genome mining projects, we present Post-processing Analysis tooLbox for ANTIsmash Reports (Palantir), a dedicated software suite for handling and refining secondary metabolite biosynthetic gene cluster (BGC) data annotated with the popular antiSMASH pipeline. Palantir provides new functionalities building on NRPS\/PKS predictions from antiSMASH, such as improved BGC annotation, module delineation and easy access to sub-sequences at different levels (cluster, gene, module and domain). Moreover, it can parse user-provided antiSMASH reports and reformat them for direct use or storage in a relational database.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Palantir is released both as a Perl API available on CPAN (https:\/\/metacpan.org\/release\/Bio-Palantir) and as a web application (http:\/\/palantir.uliege.be). As a practical use case, the web interface also features a database built from the mining of 1616 cyanobacterial genomes, of which 1488 were predicted to encode at least one BGC.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa517","type":"journal-article","created":{"date-parts":[[2020,5,12]],"date-time":"2020-05-12T13:21:44Z","timestamp":1589289704000},"page":"4345-4347","source":"Crossref","is-referenced-by-count":7,"title":["Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects"],"prefix":"10.1093","volume":"36","author":[{"given":"Lo\u00efc","family":"Meunier","sequence":"first","affiliation":[{"name":"InBioS-PhytoSYSTEMS, Eukaryotic Phylogenomics, University of Li\u00e8ge , B-4000 Li\u00e8ge, Belgium"},{"name":"Microbial Processes and Interactions, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro UMRT 1158, Gembloux Agro-Bio Tech, University of Li\u00e8ge, B-5030 Gembloux, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pierre","family":"Tocquin","sequence":"additional","affiliation":[{"name":"InBioS-PhytoSYSTEMS, Plant Physiology, University of Li\u00e8ge , B-4000 Li\u00e8ge, Belgium"},{"name":"Hedera-22 SCRL , B-4130 Tilff, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luc","family":"Cornet","sequence":"additional","affiliation":[{"name":"GIGA institute, Medical Genomics-Unit of Animal Genomics, University of Li\u00e8ge , B-4000 Li\u00e8ge, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Damien","family":"Sirjacobs","sequence":"additional","affiliation":[{"name":"InBioS-PhytoSYSTEMS, Eukaryotic Phylogenomics, University of Li\u00e8ge , B-4000 Li\u00e8ge, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Val\u00e9rie","family":"Lecl\u00e8re","sequence":"additional","affiliation":[{"name":"Univ. Lille, INRA, ISA, Univ. Artois, Univ. 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