{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,1]],"date-time":"2026-06-01T16:12:40Z","timestamp":1780330360892,"version":"3.54.1"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2020,6,19]],"date-time":"2020-06-19T00:00:00Z","timestamp":1592524800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"National Institute of General Medical Sciences of the National Institutes of Health","award":["R01GM132353"],"award-info":[{"award-number":["R01GM132353"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Motivation<\/jats:title>\n                    <jats:p>Molecular docking is a computational technique for predicting how a small molecule might bind a macromolecular target. Among docking programs, AutoDock Vina is particularly popular. Like many docking programs, Vina requires users to download\/install an executable file and to run that file from a command-line interface. Choosing proper configuration parameters and analyzing Vina output is also sometimes challenging. These issues are particularly problematic for students and novice researchers.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>We created Webina, a new version of Vina, to address these challenges. Webina runs Vina entirely in a web browser, so users need only visit a Webina-enabled webpage. The docking calculations take place on the user\u2019s own computer rather than a remote server.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>A working version of the open-source Webina app can be accessed free of charge from http:\/\/durrantlab.com\/webina.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa579","type":"journal-article","created":{"date-parts":[[2020,6,13]],"date-time":"2020-06-13T00:31:13Z","timestamp":1592008273000},"page":"4513-4515","source":"Crossref","is-referenced-by-count":112,"title":["Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser"],"prefix":"10.1093","volume":"36","author":[{"given":"Yuri","family":"Kochnev","sequence":"first","affiliation":[{"name":"Department of Biological Sciences, University of Pittsburgh , Pittsburgh, PA 15260, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erich","family":"Hellemann","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Pittsburgh , Pittsburgh, PA 15260, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kevin C","family":"Cassidy","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Pittsburgh , Pittsburgh, PA 15260, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5808-4097","authenticated-orcid":false,"given":"Jacob D","family":"Durrant","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences, University of Pittsburgh , Pittsburgh, PA 15260, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2020,6,19]]},"reference":[{"key":"2023062213532589600_btaa579-B1","first-page":"243","volume-title":"Small-Molecule Library Screening by Docking with PyRx","author":"Dallakyan","year":"2015"},{"key":"2023062213532589600_btaa579-B2","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1007\/s10822-016-0006-1","article-title":"DockingApp: a user friendly interface for facilitated docking simulations with AutoDock Vina","volume":"31","author":"Di Muzio","year":"2017","journal-title":"J. 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