{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,5]],"date-time":"2025-11-05T21:06:04Z","timestamp":1762376764749,"version":"3.37.3"},"reference-count":22,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2020,7,27]],"date-time":"2020-07-27T00:00:00Z","timestamp":1595808000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Marsden","award":["18-UOA-096"],"award-info":[{"award-number":["18-UOA-096"]}]},{"DOI":"10.13039\/501100001509","name":"Royal Society of New Zealand","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001509","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,4,19]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Visualization is a vital task in phylogenetics and yet there is a deficit in programs which visualize the multispecies coalescent (MSC) model. UglyTrees (UT) is an easy-to-use program for visualizing multiple gene trees embedded within a single species trees. The mapping between gene and species nodes is automatically detected allowing for ready access to the program. UT can scrape the contents of a website for MSC analyses, enabling the sharing of interactive MSC figures through optional parameters in the URL. If a posterior distribution is uploaded, the transitions between MSC states are animated allowing the visual tracking of trees throughout the sequence.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>UT runs in all major web browsers including mobile devices, and is hosted at www.uglytrees.nz. The MIT-licensed code is available at https:\/\/github.com\/UglyTrees\/uglytrees.github.io.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa679","type":"journal-article","created":{"date-parts":[[2020,7,23]],"date-time":"2020-07-23T11:30:05Z","timestamp":1595503805000},"page":"268-269","source":"Crossref","is-referenced-by-count":17,"title":["UglyTrees: a browser-based multispecies coalescent tree visualizer"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0371-9961","authenticated-orcid":false,"given":"Jordan","family":"Douglas","sequence":"first","affiliation":[{"name":"School of Computer Science, University of Auckland , Auckland 1010, New Zealand"}]}],"member":"286","published-online":{"date-parts":[[2020,7,27]]},"reference":[{"key":"2023051511001681400_btaa679-B1","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1146\/annurev.ecolsys.33.010802.150500","article-title":"Estimating divergence times from molecular data on phylogenetic and population genetic timescales","volume":"33","author":"Arbogast","year":"2002","journal-title":"Annu. 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