{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,26]],"date-time":"2025-09-26T22:38:21Z","timestamp":1758926301209,"version":"3.37.3"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2020,7,27]],"date-time":"2020-07-27T00:00:00Z","timestamp":1595808000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100008762","name":"Genome Canada","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008762","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000233","name":"Genome British Columbia","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000233","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science and Engineering Research Council"},{"name":"Canada and Compute\/Calcul Canada"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,4,20]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Networks are used to relate topological structure to system dynamics and function, particularly in ecology systems biology. Network analysis is often guided or complemented by data-driven visualization. Hive one of many network visualizations, distinguish themselves as providing a general, consistent and coherent rule-based representation to motivate hypothesis development and testing.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>Here, we present HyPE, Hive Panel Explorer, a software application that creates a panel of interactive hive plots. HyPE enables network exploration based on user-driven layout rules and parameter combinations for simultaneous of multiple network views. We demonstrate HyPE\u2019s features by exploring a microbial co-occurrence network constructed from forest soil microbiomes.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>HyPE is available under the GNU license: https:\/\/github.com\/hallamlab\/HivePanelExplorer.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa683","type":"journal-article","created":{"date-parts":[[2020,7,22]],"date-time":"2020-07-22T19:24:53Z","timestamp":1595445893000},"page":"436-437","source":"Crossref","is-referenced-by-count":0,"title":["Hive Panel Explorer: an interactive network visualization tool"],"prefix":"10.1093","volume":"37","author":[{"given":"Sarah E I","family":"Perez","sequence":"first","affiliation":[{"name":"Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6105-7172","authenticated-orcid":false,"given":"Aria S","family":"Hahn","sequence":"additional","affiliation":[{"name":"Department of Microbiology & Immunology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada"}]},{"given":"Martin","family":"Krzywinski","sequence":"additional","affiliation":[{"name":"Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada"}]},{"given":"Steven J","family":"Hallam","sequence":"additional","affiliation":[{"name":"Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada"},{"name":"Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada"},{"name":"Genome Science and Technology Program, University of British Columbia , Vancouver, BC V6T 1Z4, Canada"},{"name":"ECOSCOPE Training Program, University of British Columbia , Vancouver, BC V6T 1Z3, Canada"}]}],"member":"286","published-online":{"date-parts":[[2020,7,27]]},"reference":[{"key":"2023051603580668300_btaa683-B1","doi-asserted-by":"crossref","first-page":"2301","DOI":"10.1109\/TVCG.2011.185","article-title":"D3 data-driven documents","volume":"17","author":"Bostock","year":"2011","journal-title":"IEEE Trans. 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