{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:33:59Z","timestamp":1772138039924,"version":"3.50.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"8","license":[{"start":{"date-parts":[[2020,11,24]],"date-time":"2020-11-24T00:00:00Z","timestamp":1606176000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["F30 HG009986"],"award-info":[{"award-number":["F30 HG009986"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["RF1 MH117070"],"award-info":[{"award-number":["RF1 MH117070"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 GM123203"],"award-info":[{"award-number":["R01 GM123203"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 HG007354"],"award-info":[{"award-number":["R01 HG007354"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 HG007175"],"award-info":[{"award-number":["R01 HG007175"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 ES024992"],"award-info":[{"award-number":["R01 ES024992"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01 CA200060"],"award-info":[{"award-number":["U01 CA200060"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U24 ES026699"],"award-info":[{"award-number":["U24 ES026699"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01 HG009391"],"award-info":[{"award-number":["U01 HG009391"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000048","name":"American Cancer Society","doi-asserted-by":"publisher","award":["RSG-14-049-01-DMC"],"award-info":[{"award-number":["RSG-14-049-01-DMC"]}],"id":[{"id":"10.13039\/100000048","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,5,23]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Transposon calling cards is a genomic assay for identifying transcription factor binding sites in both bulk and single cell experiments. Here, we describe the qBED format, an open, text-based standard for encoding and analyzing calling card data. In parallel, we introduce the qBED track on the WashU Epigenome Browser, a novel visualization that enables researchers to inspect calling card data in their genomic context. Finally, through examples, we demonstrate that qBED files can be used to visualize non-calling card datasets, such as Combined Annotation-Dependent Depletion scores and GWAS\/eQTL hits, and thus may have broad utility to the genomics community.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>The qBED track is available on the WashU Epigenome Browser (http:\/\/epigenomegateway.wustl.edu\/browser), beginning with version 46. Source code for the WashU Epigenome Browser with qBED support is available on GitHub (http:\/\/github.com\/arnavm\/eg-react and http:\/\/github.com\/lidaof\/eg-react). A complete definition of the qBED format is available as part of the WashU Epigenome Browser documentation (https:\/\/eg.readthedocs.io\/en\/latest\/tracks.html#qbed-track). We have also released a tutorial on how to upload qBED data to the browser (http:\/\/dx.doi.org\/10.17504\/protocols.io.bca8ishw).<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa771","type":"journal-article","created":{"date-parts":[[2020,9,15]],"date-time":"2020-09-15T15:17:41Z","timestamp":1600183061000},"page":"1168-1170","source":"Crossref","is-referenced-by-count":5,"title":["The qBED track: a novel genome browser visualization for point processes"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0544-3463","authenticated-orcid":false,"given":"Arnav","family":"Moudgil","sequence":"first","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"},{"name":"Medical Scientist Training Program, Washington University in St. Louis School of Medicine , St. Louis, MO 63110, USA"}]},{"given":"Daofeng","family":"Li","sequence":"additional","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"}]},{"given":"Silas","family":"Hsu","sequence":"additional","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"}]},{"given":"Deepak","family":"Purushotham","sequence":"additional","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"}]},{"given":"Ting","family":"Wang","sequence":"additional","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"}]},{"given":"Robi D","family":"Mitra","sequence":"additional","affiliation":[{"name":"Department of Genetics , St. Louis, MO 63110, USA"},{"name":"Edison Family Center for Genome Sciences and Systems Biology , St. Louis, MO 63110, USA"}]}],"member":"286","published-online":{"date-parts":[[2020,11,24]]},"reference":[{"key":"2023051612064150000_btaa771-B1","doi-asserted-by":"crossref","first-page":"10003","DOI":"10.1073\/pnas.1918241117","article-title":"A viral toolkit for recording transcription factor\u2013DNA interactions in live mouse tissues","volume":"117","author":"Cammack","year":"2020","journal-title":"Proc. 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