{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T00:38:45Z","timestamp":1740184725635,"version":"3.37.3"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2020,12,7]],"date-time":"2020-12-07T00:00:00Z","timestamp":1607299200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"DOI":"10.13039\/501100001665","name":"ANR","doi-asserted-by":"publisher","award":["BACNET 10-BINF-02-01"],"award-info":[{"award-number":["BACNET 10-BINF-02-01"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002915","name":"Fondation pour la Recherche M\u00e9dicale","doi-asserted-by":"publisher","award":["DEQ20180339158"],"award-info":[{"award-number":["DEQ20180339158"]}],"id":[{"id":"10.13039\/501100002915","id-type":"DOI","asserted-by":"publisher"}]},{"name":"ANRS (France Recherche Nord&Sud Sida-HIV H\u00e9patites"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,6,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>To face up to the exponential growth of heterogeneous datasets of various organisms, we developed a user-friendly platform for building multi-omics websites, which is named Bacnet. This platform helps bioinformaticians to construct four key web interfaces: (i) an interactive genome viewer; (ii) an expression and protein atlas; (iii) an interface for analysis of co-expression network; (iv) an interface for exploring homolog presence. We believe our platform will help the bioinformaticians to construct personalized user interfaces dedicated to biologists studying non-reference organisms.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>https:\/\/github.com\/becavin-lab\/bacnet; Java; Eclipse RAP; Eclipse RCP.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa828","type":"journal-article","created":{"date-parts":[[2020,9,10]],"date-time":"2020-09-10T03:40:21Z","timestamp":1599709221000},"page":"1335-1336","source":"Crossref","is-referenced-by-count":1,"title":["Bacnet: a user-friendly platform for building multi-omics websites"],"prefix":"10.1093","volume":"37","author":[{"given":"Loane","family":"Dan\u00e8s","sequence":"first","affiliation":[{"name":"Hub de Bioinformatique et Biostatistique \u2013 Centre de Bioinformatique, Biostatistique et Biologie Int\u00e9grative , CNRS USR 3756 Institut Pasteur, Paris F-75015, France"}]},{"given":"Nicolas","family":"Tchitchek","sequence":"additional","affiliation":[{"name":"Sorbonne Universit\u00e9, INSERM, UMRS 959, Immunology-Immunopathology-Immunotherapy (i3) , Paris F-75005, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1555-3153","authenticated-orcid":false,"given":"Christophe","family":"B\u00e9cavin","sequence":"additional","affiliation":[{"name":"Hub de Bioinformatique et Biostatistique \u2013 Centre de Bioinformatique, Biostatistique et Biologie Int\u00e9grative , CNRS USR 3756 Institut Pasteur, Paris F-75015, France"},{"name":"Universit\u00e9 C\u00f4te d'Azur, CNRS, IPMC , Sophia-Antipolis 06560, France"}]}],"member":"286","published-online":{"date-parts":[[2020,12,7]]},"reference":[{"key":"2023051705213417400_btaa828-B1","doi-asserted-by":"crossref","first-page":"D711","DOI":"10.1093\/nar\/gky964","article-title":"ArrayExpress update \u2013 from bulk to single-cell expression data","volume":"47","author":"Athar","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"2023051705213417400_btaa828-B2","doi-asserted-by":"crossref","first-page":"e00186","DOI":"10.1128\/mSystems.00186-16","article-title":"Listeriomics: an interactive web platform for systems biology of Listeria","volume":"2","author":"B\u00e9cavin","year":"2017","journal-title":"MSystems"},{"key":"2023051705213417400_btaa828-B3","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: architecture and applications","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"2023051705213417400_btaa828-B4","doi-asserted-by":"crossref","DOI":"10.3897\/rio.5.e36178","article-title":"A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies","volume":"5","author":"Criscuolo","year":"2019","journal-title":"Res. 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