{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:01Z","timestamp":1772138041653,"version":"3.50.1"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2020,11,2]],"date-time":"2020-11-02T00:00:00Z","timestamp":1604275200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,8,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Motivation<\/jats:title>\n                    <jats:p>Data analysis is requisite on reliable data. In genetics this includes verifying that the sample is not contaminated with another, a problem ubiquitous in biology.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>In human, and other diploid species, DNA contamination from the same species can be found by the presence of three haplotypes between polymorphic SNPs. read_haps is a tool that detects sample contamination from short read whole genome sequencing data.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availabilityand implementation<\/jats:title>\n                    <jats:p>github.com\/DecodeGenetics\/read_haps.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaa936","type":"journal-article","created":{"date-parts":[[2020,10,22]],"date-time":"2020-10-22T15:13:47Z","timestamp":1603379627000},"page":"2215-2217","source":"Crossref","is-referenced-by-count":7,"title":["read_haps: using read haplotypes to detect same species contamination in DNA sequences"],"prefix":"10.1093","volume":"37","author":[{"given":"Hannes P","family":"Eggertsson","sequence":"first","affiliation":[{"name":"deCODE Genetics , Reykjav\u00edk 102, Iceland"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0756-0767","authenticated-orcid":false,"given":"Bjarni V","family":"Halldorsson","sequence":"additional","affiliation":[{"name":"deCODE Genetics , Reykjav\u00edk 102, Iceland"},{"name":"Department of Engineering, School of Technology, Reykjav\u00edk University , Reykjav\u00edk 102, Iceland"}]}],"member":"286","published-online":{"date-parts":[[2020,11,2]]},"reference":[{"key":"2023061310295186000_btaa936-B1","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1186\/1471-2105-9-11","article-title":"SeqAn an efficient, generic C++ library for sequence analysis","volume":"9","author":"D\u00f6ring","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"2023061310295186000_btaa936-B2","doi-asserted-by":"crossref","first-page":"1654","DOI":"10.1038\/ng.3964","article-title":"Graphtyper enables population-scale genotyping using pangenome graphs","volume":"49","author":"Eggertsson","year":"2017","journal-title":"Nat. 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