{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,9]],"date-time":"2026-01-09T17:55:52Z","timestamp":1767981352354,"version":"3.49.0"},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"17","license":[{"start":{"date-parts":[[2021,1,28]],"date-time":"2021-01-28T00:00:00Z","timestamp":1611792000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000268","name":"Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/S007105\/1"],"award-info":[{"award-number":["BB\/S007105\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Covariance-based predictions of residue contacts and inter-residue distances are an increasingly popular data type in protein bioinformatics. Here we present ConPlot, a web-based application for convenient display and analysis of contact maps and distograms. Integration of predicted contact data with other predictions is often required to facilitate inference of structural features. ConPlot can therefore use the empty space near the contact map diagonal to display multiple coloured tracks representing other sequence-based predictions. Popular file formats are natively read and bespoke data can also be flexibly displayed. This novel visualization will enable easier interpretation of predicted contact maps.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>available online at www.conplot.org, along with documentation and examples. Alternatively, ConPlot can be installed and used locally using the docker image from the project\u2019s Docker Hub repository. ConPlot is licensed under the BSD 3-Clause.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab049","type":"journal-article","created":{"date-parts":[[2021,1,21]],"date-time":"2021-01-21T20:21:16Z","timestamp":1611260476000},"page":"2763-2765","source":"Crossref","is-referenced-by-count":8,"title":["ConPlot: web-based application for the visualization of protein contact maps integrated with other data"],"prefix":"10.1093","volume":"37","author":[{"given":"Filomeno","family":"S\u00e1nchez Rodr\u00edguez","sequence":"first","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"},{"name":"Life Science, Diamond Light Source, Harwell Science and Innovation Campus , Didcot, Oxfordshire OX11 0DE, UK"}]},{"given":"Shahram","family":"Mesdaghi","sequence":"additional","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"}]},{"given":"Adam J.","family":"Simpkin","sequence":"additional","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"}]},{"given":"J. Javier","family":"Burgos-M\u00e1rmol","sequence":"additional","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"}]},{"given":"David L.","family":"Murphy","sequence":"additional","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"}]},{"given":"Ville","family":"Uski","sequence":"additional","affiliation":[{"name":"UKRI-STFC, Rutherford Appleton Laboratory, Research Complex at Harwell , Didcot OX11 0FA, UK"}]},{"given":"Ronan M.","family":"Keegan","sequence":"additional","affiliation":[{"name":"UKRI-STFC, Rutherford Appleton Laboratory, Research Complex at Harwell , Didcot OX11 0FA, UK"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7565-8937","authenticated-orcid":false,"given":"Daniel J.","family":"Rigden","sequence":"additional","affiliation":[{"name":"Institute of Structural, Molecular and Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"}]}],"member":"286","published-online":{"date-parts":[[2021,1,28]]},"reference":[{"key":"2023051609171245700_btab049-B1","doi-asserted-by":"crossref","first-page":"e1004398","DOI":"10.1371\/journal.pcbi.1004398","article-title":"An integrated framework advancing membrane protein modeling and design","volume":"11","author":"Alford","year":"2015","journal-title":"PLoS Comput. 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