{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,8]],"date-time":"2026-04-08T10:36:17Z","timestamp":1775644577704,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"17","license":[{"start":{"date-parts":[[2021,2,3]],"date-time":"2021-02-03T00:00:00Z","timestamp":1612310400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Poznan University of Technology and grants from the National Science Centre","award":["2016\/23\/N\/ST6\/03779"],"award-info":[{"award-number":["2016\/23\/N\/ST6\/03779"]}]},{"name":"Poznan University of Technology and grants from the National Science Centre","award":["2016\/23\/B\/ST6\/03931"],"award-info":[{"award-number":["2016\/23\/B\/ST6\/03931"]}]},{"name":"Poznan University of Technology and grants from the National Science Centre","award":["2019\/35\/B\/ST6\/03074"],"award-info":[{"award-number":["2019\/35\/B\/ST6\/03074"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,9]]},"abstract":"Abstract<\/jats:title>\n \n Motivation<\/jats:title>\n Biomolecular structures come in multiple representations and diverse data formats. Their incompatibility with the requirements of data analysis programs significantly hinders the analytics and the creation of new structure-oriented bioinformatic tools. Therefore, the need for robust libraries of data processing functions is still growing.<\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n BioCommons is an open-source, Java library for structural bioinformatics. It contains many functions working with the 2D and 3D structures of biomolecules, with a particular emphasis on RNA.<\/jats:p>\n <\/jats:sec>\n \n Availability and implementation<\/jats:title>\n The library is available in Maven Central Repository and its source code is hosted on GitHub: https:\/\/github.com\/tzok\/BioCommons<\/jats:p>\n <\/jats:sec>\n \n Supplementary information<\/jats:title>\n Supplementary data are available at Bioinformatics online.<\/jats:p>\n <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab069","type":"journal-article","created":{"date-parts":[[2021,1,29]],"date-time":"2021-01-29T12:19:33Z","timestamp":1611922773000},"page":"2766-2767","source":"Crossref","is-referenced-by-count":5,"title":["BioCommons: a robust java library for RNA structural bioinformatics"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4103-9238","authenticated-orcid":false,"given":"Tomasz","family":"Zok","sequence":"first","affiliation":[{"name":"Institute of Computing Science, Poznan University of Technology, Poznan 60-965, Poland"}]}],"member":"286","published-online":{"date-parts":[[2021,2,3]]},"reference":[{"key":"2023051609170069500_btab069-B1","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1017\/S0033583511000059","article-title":"A new way to see RNA","volume":"44","author":"Keating","year":"2011","journal-title":"Q. 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